proteins
| 22 proteins |
H | COG0854 | Pyridoxal phosphate biosynthesis protein | Help | |
|---|---|---|---|---|---|
| 0 from | query genome Pyrococcus abyssi (Thermococcales | Thermococci) | ||||
| |||||
184 letters (r) 0
0 849 _ ||| 1 PAB2165_1 (184) COG3390 0
0-3 115 _ | 8 MA3018 (189) COG3390 -1
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2165_1
(184 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
PAB2165_1 331 5e-91
PH1894_1 320 1e-87
MA3018 49 5e-06
VNG2162C 35 0.061
AF0779 34 0.22
NMA0995 33 0.32
RSc0474_2 32 0.93
NMB0785 32 1.0
SPAC16A10.01_1 32 1.1
VNG1253C_1 31 1.6
aq_1423 30 2.2
BH2956_2 30 2.3
MTH1581 30 2.4
CC2616 30 3.3
AGl3017 30 3.9
BS_thiA 29 6.7
MK0187 29 7.1
# >PAB2165_1
# Length = 184
#
# Score = 331 bits (849), Expect = 5e-91
# Identities = 184/184 (100%), Positives = 184/184 (100%)
#
# Query: 1 MVIEMKKRMPATRLYIKDILEGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIA 60
# MVIEMKKRMPATRLYIKDILEGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIA
# Sbjct: 1 MVIEMKKRMPATRLYIKDILEGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIA 60
#
# Query: 61 EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSK 120
# EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSK
# Sbjct: 61 EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSK 120
#
# Query: 121 VHPNMWILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELLEVIDEL 180
# VHPNMWILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELLEVIDEL
# Sbjct: 121 VHPNMWILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELLEVIDEL 180
#
# Query: 181 YGIM 184
# YGIM
# Sbjct: 181 YGIM 184
#
#
# >PH1894_1
# Length = 184
#
# Score = 320 bits (820), Expect = 1e-87
# Identities = 171/184 (92%), Positives = 182/184 (97%)
#
# Query: 1 MVIEMKKRMPATRLYIKDILEGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIA 60
# MV+EMKKR+PATR+YIKDILEGYFVKSEGDFEPNYLITKYARK+YRAKIVGTVVREPLIA
# Sbjct: 1 MVVEMKKRLPATRVYIKDILEGYFVKSEGDFEPNYLITKYARKIYRAKIVGTVVREPLIA 60
#
# Query: 61 EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSK 120
# EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLV+KGDLVQVIGKIAEWRDDKQILVEGV+K
# Sbjct: 61 EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVKKGDLVQVIGKIAEWRDDKQILVEGVAK 120
#
# Query: 121 VHPNMWILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELLEVIDEL 180
# VHPNMWILHRYETLKEK+EHI+KAKIA +IYNQYGITAKSKVIAKNKG+ EELLEVIDEL
# Sbjct: 121 VHPNMWILHRYETLKEKVEHIRKAKIAFDIYNQYGITAKSKVIAKNKGVPEELLEVIDEL 180
#
# Query: 181 YGIM 184
# YGI+
# Sbjct: 181 YGII 184
#
#
# >MA3018
# Length = 189
#
# Score = 48.9 bits (115), Expect = 5e-06
# Identities = 38/123 (30%), Positives = 63/123 (50%), Gaps = 14/123 (11%)
#
# Query: 31 FEPNYLITKYARKVYRAKIVGTVVREPLIAEDETYGKFQVDDGTGVIWVLGFRDDTKFAK 90
# + P YL+T KV R IVGT++ + I D Y + +V D TG V + + A+
# Sbjct: 31 YAPQYLLTPTGAKVNRIFIVGTLIEKEDIGTDSEYWRGRVSDPTGSFLVYAGQYQPEAAQ 90
#
# Query: 91 LVRKGDL---VQVIGKIAEW-RDDKQIL-------VEGVSKVHPNMWILHRYETLKEKIE 139
# + + +L V VIGK + + DD +L ++ V ++ N+W+L +T K+ +E
# Sbjct: 91 FLEECELPAFVAVIGKTSTYTTDDGNVLTSIRPESIQQVDELTRNLWVL---DTAKQTLE 147
#
# Query: 140 HIK 142
# IK
# Sbjct: 148 RIK 150
#
#
# >VNG2162C
# Length = 190
#
# Score = 35.4 bits (80), Expect = 0.061
# Identities = 42/185 (22%), Positives = 77/185 (40%), Gaps = 19/185 (10%)
#
# Query: 8 RMPATRLYIKDILEGYFVKSEGDFE--PNYLITKYARKVYRAKIVGTVVREPLIAEDETY 65
# R A R++ + + F E D E P Y + + R + GT+ I ED Y
# Sbjct: 7 REVARRVFAAEFNDATFTFKESDDERAPLYALLPTGERANRVFVTGTLTETEDIGEDAEY 66
#
# Query: 66 GKFQVDDGTGVIWVLGFRDDTKFAKLVRKGD---LVQVIGKIAEWR-DDKQILV----EG 117
# + +V D TG +V + + A +R + V V+GK + DD + V E
# Sbjct: 67 WRGRVVDPTGTFFVYAGQYQPEAAAALRDAETPTYVAVVGKPRTYETDDGSVNVSLRPES 126
#
# Query: 118 VSKVHPNM---WILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELL 174
# ++ V ++ W++ E ++IE E N+Y A+++ A + ++
# Sbjct: 127 ITMVEESVRDRWVVEAAERTLDRIEAFN------EEGNEYAERARAEYGADTSAYRQAVV 180
#
# Query: 175 EVIDE 179
# + + E
# Sbjct: 181 DALAE 185
#
#
# >AF0779
# Length = 228
#
# Score = 33.9 bits (76), Expect = 0.22
# Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
#
# Query: 7 KRMPATRLYIKDILEG-YFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIAEDETY 65
# KR A R++ K+++ Y +K E + P Y++T K R I+G + + ED +
# Sbjct: 6 KREVARRVFAKELMNSTYTLKDESEKSPVYVLTPLGLKCNRVFIIGVLTEKGGRGEDGSI 65
#
# Query: 66 GKFQVDDGTG-VIWVLGFRDDTKFAKL--VRKGDLVQVIGKIAEWRDDKQILV----EGV 118
# + +V D TG + +G + L + LV + K+ + + V E +
# Sbjct: 66 YRIRVVDQTGSFVGYVGRYQPEAYEALEDIDTLTLVALTAKVRVFEGETGKFVTLRPETI 125
#
# Query: 119 SKVHP---NMWILHRYETLKEKIEHIKK-----AKIALEIYN 152
# S P + W++ E+I+ ++K A++A+E+YN
# Sbjct: 126 SIADPESRDYWVMETAIQTLERIKEMEKGEKETARLAMEVYN 167
#
#
# >NMA0995
# Length = 1204
#
# Score = 33.1 bits (74), Expect = 0.32
# Identities = 18/48 (37%), Positives = 28/48 (57%), Gaps = 1/48 (2%)
#
# Query: 128 LHRYETLKEKIEH-IKKAKIALEIYNQYGITAKSKVIAKNKGIEEELL 174
# LH + + +I H + A+ AL+ +NQYGI A + ++ GIE LL
# Sbjct: 643 LHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLL 690
#
#
# >RSc0474_2
# Length = 401
#
# Score = 31.6 bits (70), Expect = 0.93
# Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
#
# Query: 21 EGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIAEDETYGKFQVDDGTGVIWV 79
# +G + S+G F + Y R+V+RA I G +PL T+GK + IWV
# Sbjct: 26 QGSWSASQGSFLARSTLPVYGRQVFRAAIQGATTVDPL-----THGKTIEETDAVRIWV 79
#
#
# >NMB0785
# Length = 1204
#
# Score = 31.6 bits (70), Expect = 1.0
# Identities = 17/48 (35%), Positives = 28/48 (57%), Gaps = 1/48 (2%)
#
# Query: 128 LHRYETLKEKIEH-IKKAKIALEIYNQYGITAKSKVIAKNKGIEEELL 174
# LH + + +I H + A+ AL+ +N+YGI A + ++ GIE LL
# Sbjct: 643 LHDFNQNESEILHWAESARTALDNWNKYGIFAAMQQFSQTHGIETRLL 690
#
#
# >SPAC16A10.01_1
# Length = 635
#
# Score = 31.6 bits (70), Expect = 1.1
# Identities = 22/63 (34%), Positives = 32/63 (49%), Gaps = 7/63 (11%)
#
# Query: 8 RMPATRLYIKDILEGYFVKSEGDFEPNYLI------TKYARKVYRAKIVGTVVREPLIAE 61
# ++PAT LY+ D + YF K E + P+ + T R V +I V+R+ L AE
# Sbjct: 428 QLPATFLYLPDCMFVYFKKLE-QYSPDVFVVRVTSQTDLNRMVLVNEIFRRVMRDKLSAE 486
#
# Query: 62 DET 64
# D T
# Sbjct: 487 DGT 489
#
#
# >VNG1253C_1
# Length = 208
#
# Score = 30.8 bits (68), Expect = 1.6
# Identities = 23/78 (29%), Positives = 37/78 (46%), Gaps = 4/78 (5%)
#
# Query: 4 EMKKRMPATRLYIKDILEGYFVKSEGDFE--PNYLITKYARKVYRAKIVGTVVREPLIAE 61
# E +R A RL+ + + F +E D E PNY++T +V R +VG + + +
# Sbjct: 11 ERNRREVAYRLFAAEFDDADFSYAESDEERAPNYVVTPTGARVNRLFVVGVLTAVEAVND 70
#
# Query: 62 DETYGKFQVDDGTGVIWV 79
# D + +V D TG V
# Sbjct: 71 DVV--RARVVDPTGAFVV 86
#
#
# >aq_1423
# Length = 242
#
# Score = 30.4 bits (67), Expect = 2.2
# Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
#
# Query: 122 HPNMWILHRYETLKEKIEHIKKAKI-----ALEIYNQYGITAKS--KVIAKNKGIEEEL 173
# + N+W HR+E KE++ IK+A I L++Y +G+T + + + KG EEL
# Sbjct: 156 YANLWNEHRFEEAKEELNRIKEAAIYAKEKGLKVYAGHGLTYHNVKDFVRELKGYVEEL 214
#
#
# >BH2956_2
# Length = 156
#
# Score = 30.4 bits (67), Expect = 2.3
# Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
#
# Query: 66 GKFQVDDGTGVIWVLGFRDDTKFAKLVRK-GDLVQVIGKIAEWRDDKQILVEGVSKVHPN 124
# G FQVD TGV D +L K G+ + + G+ ++ L+E V + HPN
# Sbjct: 51 GGFQVDTTTGVT-----STDEALRQLQEKTGNPIVLCGRDEDYESLAASLIEAVREAHPN 105
#
# Query: 125 MWIL 128
# IL
# Sbjct: 106 AMIL 109
#
#
# >MTH1581
# Length = 137
#
# Score = 30.4 bits (67), Expect = 2.4
# Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
#
# Query: 69 QVDDGTGVIWVLGFRDDTKFAK------LVRKGDLVQVIGKIAEWRDDKQILVEGVSKVH 122
# +++DGTG I + F + K ++ KG VQV G++ E+R ++ VE S +
# Sbjct: 72 KINDGTGTITAVIFESTAETIKRNGPAPILLKGMRVQVTGRVKEYRGLLEVAVEEPSGLR 131
#
# Query: 123 P 123
# P
# Sbjct: 132 P 132
#
#
# >CC2616
# Length = 428
#
# Score = 30.0 bits (66), Expect = 3.3
# Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 5/60 (8%)
#
# Query: 110 DKQILVEG-VSKVHPNMWI-LHRYETL---KEKIEHIKKAKIALEIYNQYGITAKSKVIA 164
# D Q+ + G + HP++W+ H E L KE KAK L++Y+++G+ + V A
# Sbjct: 206 DAQLAMAGEILAEHPDVWMQTHLSENLHEIKETARLFPKAKDYLDVYDRFGLLRQRSVFA 265
#
#
# >AGl3017
# Length = 394
#
# Score = 29.6 bits (65), Expect = 3.9
# Identities = 14/37 (37%), Positives = 22/37 (58%)
#
# Query: 126 WILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKV 162
# W+L R+ +L+ E I KA+ EI ++GI + KV
# Sbjct: 254 WLLVRWGSLRGNDEAITKARRLFEIGEEHGICPRRKV 290
#
#
# >BS_thiA
# Length = 590
#
# Score = 28.9 bits (63), Expect = 6.7
# Identities = 16/54 (29%), Positives = 27/54 (49%), Gaps = 5/54 (9%)
#
# Query: 68 FQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSKV 121
# F + DG + D+ +FA+L G+L Q+ W+ D Q+++EG V
# Sbjct: 348 FSLGDGLRPGSIADANDEAQFAELETLGELTQI-----AWKHDVQVMIEGPGHV 396
#
#
# >MK0187
# Length = 219
#
# Score = 28.9 bits (63), Expect = 7.1
# Identities = 16/53 (30%), Positives = 28/53 (52%)
#
# Query: 84 DDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSKVHPNMWILHRYETLKE 136
# D K A++ R+ +++ + W DD +VE V K P++ ++ RY KE
# Sbjct: 144 DFLKAARIARRRCDLELRITVHPWLDDVPRVVEAVRKASPDVVVVQRYVGDKE 196
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.320 0.141 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,392,739
Number of Sequences: 192987
Number of extensions: 946698
Number of successful extensions: 2803
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2788
Number of HSP's gapped (non-prelim): 49
length of query: 184
length of database: 59,019,183
effective HSP length: 103
effective length of query: 81
effective length of database: 39,141,522
effective search space: 3170463282
effective search space used: 3170463282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
S2: 62 (28.5 bits)