9 proteins |
S | COG3390 | Uncharacterized protein conserved in archaea | Help | |
---|---|---|---|---|---|
1 from | query genome Pyrococcus abyssi (Thermococcales | Thermococci) | ||||
PAB2165_1 |
184 letters (r) 0 0 849 = ||| 1 PAB2165_1 (184) = 0 0 820 = ||| 2 PH1894_1 (184) =
0 -3 115 = | 8 MA3018 (189) = -1 0 80 = | 8 VNG2162C (190) = -1 29 76 = | 8 AF0779 (228) = 515 504 74 _ 156 NMA0995 (1204) COG1074 5 217 70 _ 126 RSc0474_2 (401) COG1024 515 504 70 _ 255 NMB0785 (1204) COG1074 420 26 70 _ 255 SPAC16A10.01_1 (635) COG2966 7 17 68 = | 8 VNG1253C_1 (208) = 34 17 67 _ 32 aq_1423 (242) COG0854 -15 -9 67 _ 14 BH2956_2 (156) COG2185 3 -56 67 _ | 20 MTH1581 (137) COG4085 96 143 66 _ 255 CC2616 (428) COG0402 128 82 65 _ 255 AGl3017 (394) COG2942 280 131 63 _ 255 BS_thiA (590) COG0422 60 -25 63 _ |255 MK0187 (219) COG1180
BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB2165_1 (184 letters) Database: myva 192,987 sequences; 59,019,183 total letters Score E Sequences producing significant alignments: (bits) Value PAB2165_1 331 5e-91 PH1894_1 320 1e-87 MA3018 49 5e-06 VNG2162C 35 0.061 AF0779 34 0.22 NMA0995 33 0.32 RSc0474_2 32 0.93 NMB0785 32 1.0 SPAC16A10.01_1 32 1.1 VNG1253C_1 31 1.6 aq_1423 30 2.2 BH2956_2 30 2.3 MTH1581 30 2.4 CC2616 30 3.3 AGl3017 30 3.9 BS_thiA 29 6.7 MK0187 29 7.1 # >PAB2165_1 # Length = 184 # # Score = 331 bits (849), Expect = 5e-91 # Identities = 184/184 (100%), Positives = 184/184 (100%) # # Query: 1 MVIEMKKRMPATRLYIKDILEGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIA 60 # MVIEMKKRMPATRLYIKDILEGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIA # Sbjct: 1 MVIEMKKRMPATRLYIKDILEGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIA 60 # # Query: 61 EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSK 120 # EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSK # Sbjct: 61 EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSK 120 # # Query: 121 VHPNMWILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELLEVIDEL 180 # VHPNMWILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELLEVIDEL # Sbjct: 121 VHPNMWILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELLEVIDEL 180 # # Query: 181 YGIM 184 # YGIM # Sbjct: 181 YGIM 184 # # # >PH1894_1 # Length = 184 # # Score = 320 bits (820), Expect = 1e-87 # Identities = 171/184 (92%), Positives = 182/184 (97%) # # Query: 1 MVIEMKKRMPATRLYIKDILEGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIA 60 # MV+EMKKR+PATR+YIKDILEGYFVKSEGDFEPNYLITKYARK+YRAKIVGTVVREPLIA # Sbjct: 1 MVVEMKKRLPATRVYIKDILEGYFVKSEGDFEPNYLITKYARKIYRAKIVGTVVREPLIA 60 # # Query: 61 EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSK 120 # EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLV+KGDLVQVIGKIAEWRDDKQILVEGV+K # Sbjct: 61 EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVKKGDLVQVIGKIAEWRDDKQILVEGVAK 120 # # Query: 121 VHPNMWILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELLEVIDEL 180 # VHPNMWILHRYETLKEK+EHI+KAKIA +IYNQYGITAKSKVIAKNKG+ EELLEVIDEL # Sbjct: 121 VHPNMWILHRYETLKEKVEHIRKAKIAFDIYNQYGITAKSKVIAKNKGVPEELLEVIDEL 180 # # Query: 181 YGIM 184 # YGI+ # Sbjct: 181 YGII 184 # # # >MA3018 # Length = 189 # # Score = 48.9 bits (115), Expect = 5e-06 # Identities = 38/123 (30%), Positives = 63/123 (50%), Gaps = 14/123 (11%) # # Query: 31 FEPNYLITKYARKVYRAKIVGTVVREPLIAEDETYGKFQVDDGTGVIWVLGFRDDTKFAK 90 # + P YL+T KV R IVGT++ + I D Y + +V D TG V + + A+ # Sbjct: 31 YAPQYLLTPTGAKVNRIFIVGTLIEKEDIGTDSEYWRGRVSDPTGSFLVYAGQYQPEAAQ 90 # # Query: 91 LVRKGDL---VQVIGKIAEW-RDDKQIL-------VEGVSKVHPNMWILHRYETLKEKIE 139 # + + +L V VIGK + + DD +L ++ V ++ N+W+L +T K+ +E # Sbjct: 91 FLEECELPAFVAVIGKTSTYTTDDGNVLTSIRPESIQQVDELTRNLWVL---DTAKQTLE 147 # # Query: 140 HIK 142 # IK # Sbjct: 148 RIK 150 # # # >VNG2162C # Length = 190 # # Score = 35.4 bits (80), Expect = 0.061 # Identities = 42/185 (22%), Positives = 77/185 (40%), Gaps = 19/185 (10%) # # Query: 8 RMPATRLYIKDILEGYFVKSEGDFE--PNYLITKYARKVYRAKIVGTVVREPLIAEDETY 65 # R A R++ + + F E D E P Y + + R + GT+ I ED Y # Sbjct: 7 REVARRVFAAEFNDATFTFKESDDERAPLYALLPTGERANRVFVTGTLTETEDIGEDAEY 66 # # Query: 66 GKFQVDDGTGVIWVLGFRDDTKFAKLVRKGD---LVQVIGKIAEWR-DDKQILV----EG 117 # + +V D TG +V + + A +R + V V+GK + DD + V E # Sbjct: 67 WRGRVVDPTGTFFVYAGQYQPEAAAALRDAETPTYVAVVGKPRTYETDDGSVNVSLRPES 126 # # Query: 118 VSKVHPNM---WILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELL 174 # ++ V ++ W++ E ++IE E N+Y A+++ A + ++ # Sbjct: 127 ITMVEESVRDRWVVEAAERTLDRIEAFN------EEGNEYAERARAEYGADTSAYRQAVV 180 # # Query: 175 EVIDE 179 # + + E # Sbjct: 181 DALAE 185 # # # >AF0779 # Length = 228 # # Score = 33.9 bits (76), Expect = 0.22 # Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 16/162 (9%) # # Query: 7 KRMPATRLYIKDILEG-YFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIAEDETY 65 # KR A R++ K+++ Y +K E + P Y++T K R I+G + + ED + # Sbjct: 6 KREVARRVFAKELMNSTYTLKDESEKSPVYVLTPLGLKCNRVFIIGVLTEKGGRGEDGSI 65 # # Query: 66 GKFQVDDGTG-VIWVLGFRDDTKFAKL--VRKGDLVQVIGKIAEWRDDKQILV----EGV 118 # + +V D TG + +G + L + LV + K+ + + V E + # Sbjct: 66 YRIRVVDQTGSFVGYVGRYQPEAYEALEDIDTLTLVALTAKVRVFEGETGKFVTLRPETI 125 # # Query: 119 SKVHP---NMWILHRYETLKEKIEHIKK-----AKIALEIYN 152 # S P + W++ E+I+ ++K A++A+E+YN # Sbjct: 126 SIADPESRDYWVMETAIQTLERIKEMEKGEKETARLAMEVYN 167 # # # >NMA0995 # Length = 1204 # # Score = 33.1 bits (74), Expect = 0.32 # Identities = 18/48 (37%), Positives = 28/48 (57%), Gaps = 1/48 (2%) # # Query: 128 LHRYETLKEKIEH-IKKAKIALEIYNQYGITAKSKVIAKNKGIEEELL 174 # LH + + +I H + A+ AL+ +NQYGI A + ++ GIE LL # Sbjct: 643 LHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLL 690 # # # >RSc0474_2 # Length = 401 # # Score = 31.6 bits (70), Expect = 0.93 # Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%) # # Query: 21 EGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIAEDETYGKFQVDDGTGVIWV 79 # +G + S+G F + Y R+V+RA I G +PL T+GK + IWV # Sbjct: 26 QGSWSASQGSFLARSTLPVYGRQVFRAAIQGATTVDPL-----THGKTIEETDAVRIWV 79 # # # >NMB0785 # Length = 1204 # # Score = 31.6 bits (70), Expect = 1.0 # Identities = 17/48 (35%), Positives = 28/48 (57%), Gaps = 1/48 (2%) # # Query: 128 LHRYETLKEKIEH-IKKAKIALEIYNQYGITAKSKVIAKNKGIEEELL 174 # LH + + +I H + A+ AL+ +N+YGI A + ++ GIE LL # Sbjct: 643 LHDFNQNESEILHWAESARTALDNWNKYGIFAAMQQFSQTHGIETRLL 690 # # # >SPAC16A10.01_1 # Length = 635 # # Score = 31.6 bits (70), Expect = 1.1 # Identities = 22/63 (34%), Positives = 32/63 (49%), Gaps = 7/63 (11%) # # Query: 8 RMPATRLYIKDILEGYFVKSEGDFEPNYLI------TKYARKVYRAKIVGTVVREPLIAE 61 # ++PAT LY+ D + YF K E + P+ + T R V +I V+R+ L AE # Sbjct: 428 QLPATFLYLPDCMFVYFKKLE-QYSPDVFVVRVTSQTDLNRMVLVNEIFRRVMRDKLSAE 486 # # Query: 62 DET 64 # D T # Sbjct: 487 DGT 489 # # # >VNG1253C_1 # Length = 208 # # Score = 30.8 bits (68), Expect = 1.6 # Identities = 23/78 (29%), Positives = 37/78 (46%), Gaps = 4/78 (5%) # # Query: 4 EMKKRMPATRLYIKDILEGYFVKSEGDFE--PNYLITKYARKVYRAKIVGTVVREPLIAE 61 # E +R A RL+ + + F +E D E PNY++T +V R +VG + + + # Sbjct: 11 ERNRREVAYRLFAAEFDDADFSYAESDEERAPNYVVTPTGARVNRLFVVGVLTAVEAVND 70 # # Query: 62 DETYGKFQVDDGTGVIWV 79 # D + +V D TG V # Sbjct: 71 DVV--RARVVDPTGAFVV 86 # # # >aq_1423 # Length = 242 # # Score = 30.4 bits (67), Expect = 2.2 # Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 7/59 (11%) # # Query: 122 HPNMWILHRYETLKEKIEHIKKAKI-----ALEIYNQYGITAKS--KVIAKNKGIEEEL 173 # + N+W HR+E KE++ IK+A I L++Y +G+T + + + KG EEL # Sbjct: 156 YANLWNEHRFEEAKEELNRIKEAAIYAKEKGLKVYAGHGLTYHNVKDFVRELKGYVEEL 214 # # # >BH2956_2 # Length = 156 # # Score = 30.4 bits (67), Expect = 2.3 # Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%) # # Query: 66 GKFQVDDGTGVIWVLGFRDDTKFAKLVRK-GDLVQVIGKIAEWRDDKQILVEGVSKVHPN 124 # G FQVD TGV D +L K G+ + + G+ ++ L+E V + HPN # Sbjct: 51 GGFQVDTTTGVT-----STDEALRQLQEKTGNPIVLCGRDEDYESLAASLIEAVREAHPN 105 # # Query: 125 MWIL 128 # IL # Sbjct: 106 AMIL 109 # # # >MTH1581 # Length = 137 # # Score = 30.4 bits (67), Expect = 2.4 # Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%) # # Query: 69 QVDDGTGVIWVLGFRDDTKFAK------LVRKGDLVQVIGKIAEWRDDKQILVEGVSKVH 122 # +++DGTG I + F + K ++ KG VQV G++ E+R ++ VE S + # Sbjct: 72 KINDGTGTITAVIFESTAETIKRNGPAPILLKGMRVQVTGRVKEYRGLLEVAVEEPSGLR 131 # # Query: 123 P 123 # P # Sbjct: 132 P 132 # # # >CC2616 # Length = 428 # # Score = 30.0 bits (66), Expect = 3.3 # Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 5/60 (8%) # # Query: 110 DKQILVEG-VSKVHPNMWI-LHRYETL---KEKIEHIKKAKIALEIYNQYGITAKSKVIA 164 # D Q+ + G + HP++W+ H E L KE KAK L++Y+++G+ + V A # Sbjct: 206 DAQLAMAGEILAEHPDVWMQTHLSENLHEIKETARLFPKAKDYLDVYDRFGLLRQRSVFA 265 # # # >AGl3017 # Length = 394 # # Score = 29.6 bits (65), Expect = 3.9 # Identities = 14/37 (37%), Positives = 22/37 (58%) # # Query: 126 WILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKV 162 # W+L R+ +L+ E I KA+ EI ++GI + KV # Sbjct: 254 WLLVRWGSLRGNDEAITKARRLFEIGEEHGICPRRKV 290 # # # >BS_thiA # Length = 590 # # Score = 28.9 bits (63), Expect = 6.7 # Identities = 16/54 (29%), Positives = 27/54 (49%), Gaps = 5/54 (9%) # # Query: 68 FQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSKV 121 # F + DG + D+ +FA+L G+L Q+ W+ D Q+++EG V # Sbjct: 348 FSLGDGLRPGSIADANDEAQFAELETLGELTQI-----AWKHDVQVMIEGPGHV 396 # # # >MK0187 # Length = 219 # # Score = 28.9 bits (63), Expect = 7.1 # Identities = 16/53 (30%), Positives = 28/53 (52%) # # Query: 84 DDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSKVHPNMWILHRYETLKE 136 # D K A++ R+ +++ + W DD +VE V K P++ ++ RY KE # Sbjct: 144 DFLKAARIARRRCDLELRITVHPWLDDVPRVVEAVRKASPDVVVVQRYVGDKE 196 # # Database: myva Posted date: Sep 16, 2002 2:25 PM Number of letters in database: 59,019,183 Number of sequences in database: 192,987 Lambda K H 0.320 0.141 0.402 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,392,739 Number of Sequences: 192987 Number of extensions: 946698 Number of successful extensions: 2803 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 37 Number of HSP's that attempted gapping in prelim test: 2788 Number of HSP's gapped (non-prelim): 49 length of query: 184 length of database: 59,019,183 effective HSP length: 103 effective length of query: 81 effective length of database: 39,141,522 effective search space: 3170463282 effective search space used: 3170463282 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits) S2: 62 (28.5 bits)