Translation, Ribosomal Structure and Biogenesis

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases	J	Contig69	BBta1701	COG1187	223	2e-59
23S rRNA methylase	J	Contig69	BBta3597	COG0293	254	5e-69
2'-5' RNA ligase	J	Contig69	BBta0390	COG1514	129	1e-31
2-methylthioadenine synthetase	J	Contig69	BBta0046	COG0621	502	1.0e-143
2-methylthioadenine synthetase	J	Contig69	BBta0373	COG0621	408	1.0e-115
2-methylthioadenine synthetase	J	Contig69	BBta4140	COG0621	460	1.0e-130
5'-3' exonuclease	J	Contig69	BBta4346	COG5049	32.3	0.010
Acetyltransferases including N-acetylases of ribosomal proteins	J	Contig69	BBta0151	COG1670	48.4	3e-07
Acetyltransferases including N-acetylases of ribosomal proteins	J	Contig69	BBta0425	COG1670	86.2	1e-18
Acetyltransferases including N-acetylases of ribosomal proteins	J	Contig69	BBta0841	COG1670	114	4e-27
Acetyltransferases including N-acetylases of ribosomal proteins	J	Contig69	BBta1092	COG1670	47.7	1e-06
Acetyltransferases including N-acetylases of ribosomal proteins	J	Contig69	BBta1120	COG1670	66.9	9e-13
Acetyltransferases including N-acetylases of ribosomal proteins	J	Contig69	BBta3561	COG1670	98.5	3e-22
Acetyltransferases including N-acetylases of ribosomal proteins	J	Contig69	BBta3804	COG1670	114	4e-27
Acetyltransferases including N-acetylases of ribosomal proteins	J	Contig69	BBta6273	COG1670	82.7	2e-17
Acetyltransferases including N-acetylases of ribosomal proteins	J	Contig69	BBta7632	COG1670	51.9	2e-08

AMINOACYL-TRNA SYNTHETASES AND ALTERNATIVE SYSTEMS FOR AMINO ACID ACTIVATION

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Alanyl-tRNA synthetase	J	Contig69	BBta5448	COG0013	1159	0.0
Arginyl-tRNA synthetase	J	Contig69	BBta4423	COG0018	507	1.0e-145
Aspartyl-tRNA synthetase	J	Contig69	BBta3864	COG0173	847	0.0
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta0309	COG0154	290	1e-79
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta0721	COG0154	359	1.0e-100
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta0724	COG0154	312	5e-86
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta1912	COG0154	353	1e-98
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta2081	COG0154	301	9e-83
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta2400	COG0154	305	3e-84
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta2561	COG0154	354	1e-98
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta2562	COG0154	313	2e-86
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta2877	COG0154	326	3e-90
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta2934	COG0154	323	1e-89
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta3796	COG0154	277	9e-76
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta4447	COG0154	318	5e-88
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta4711	COG0154	481	1.0e-137
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta4797	COG0154	339	4e-94
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta5240	COG0154	317	1e-87
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta5261	COG0154	353	1e-98
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta6135	COG0154	348	6e-97
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta6296	COG0154	274	7e-75
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta7130	COG0154	314	9e-87
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta7145	COG0154	390	1.0e-109
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta7187	COG0154	285	6e-78
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Contig69	BBta7198	COG0154	323	1e-89
Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)	J	Contig69	BBta4709	COG0064	680	0.0
Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit	J	Contig69	BBta4713	COG0721	93.7	2e-21
Cysteinyl-tRNA synthetase	J	Contig69	BBta3498	COG0215	572	1.0e-164
Glutamyl- and glutaminyl-tRNA synthetases	J	Contig69	BBta1135	COG0008	260	8e-71
Glutamyl- and glutaminyl-tRNA synthetases	J	Contig69	BBta4500	COG0008	346	3e-96
Glutamyl- and glutaminyl-tRNA synthetases	J	Contig69	BBta4501	COG0008	437	1.0e-124
Glycyl-tRNA synthetase alpha subunit	J	Contig69	BBta2355	COG0752	520	1.0e-149
Glycyl-tRNA synthetase beta subunit	J	Contig69	BBta2357	COG0751	783	0.0
Histidyl-tRNA synthetase	J	Contig69	BBta1740	COG0124	354	6e-99
Isoleucyl-tRNA synthetase	J	Contig69	BBta1716	COG0060	1067	0.0
Isoleucyl-tRNA synthetase	J	Contig69	BBta7256	COG0060	32.1	0.008
Leucyl-tRNA synthetase	J	Contig69	BBta0171	COG0495	966	0.0
Lysyl-tRNA synthetase (class I)	J	Contig69	BBta0790	COG1384	518	1.0e-148
Phenylalanyl-tRNA synthetase alpha subunit	J	Contig69	BBta0214	COG0016	431	1.0e-122
Phenylalanyl-tRNA synthetase beta subunit	J	Contig69	BBta0212	COG0072	598	1.0e-172
Prolyl-tRNA synthetase	J	Contig69	BBta4531	COG0442	354	9e-99
Seryl-tRNA synthetase	J	Contig69	BBta4414	COG0172	527	1.0e-151
Threonyl-tRNA synthetase	J	Contig69	BBta5204	COG0441	765	0.0
Tryptophanyl-tRNA synthetase	J	Contig69	BBta0038	COG0180	369	1.0e-103
Tyrosyl-tRNA synthetase	J	Contig69	BBta3960	COG0162	433	1.0e-122
Valyl-tRNA synthetase	J	Contig69	BBta3947	COG0525	1160	0.0

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Aminoglycoside phosphotransferase	J	Contig69	BBta0715	COG3231	51.5	7e-08
Cytosine/adenosine deaminases	J	Contig69	BBta1700	COG0590	168	2e-43
Cytosine/adenosine deaminases	J	Contig69	BBta2065	COG0590	108	3e-25
Cytotoxic translational repressor of toxin-antitoxin stability system	J	Contig69	BBta6628	COG2026	33.7	0.003
Dimethyladenosine transferase (rRNA methylation)	J	Contig69	BBta3826	COG0030	256	1e-69
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	J	Contig69	BBta0180	COG0189	231	4e-62
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	J	Contig69	BBta5532	COG0189	48.8	6e-07
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	J	Contig69	BBta7496	COG0189	50.0	2e-07
Methionyl-tRNA synthetase	J	Contig69	BBta4100	COG0143	624	1.0e-180
Methylase of polypeptide chain release factors	J	Contig69	BBta1723	COG2890	180	1e-46
Methylase of polypeptide chain release factors	J	Contig69	BBta7605	COG2890	216	2e-57
NAD(FAD)-utilizing enzyme possibly involved in translation	J	Contig69	BBta4399	COG1206	653	0.0
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	J	Contig69	BBta0088	COG1208	156	2e-39
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	J	Contig69	BBta1052	COG1208	121	6e-29
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	J	Contig69	BBta5632	COG1208	167	1e-42
Peptide chain release factor RF-3	J	Contig69	BBta3762	COG4108	785	0.0
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	J	Contig69	BBta0062	COG1185	990	0.0
Predicted exonuclease of the beta-lactamase fold involved in RNA processing	J	Contig47	BBtap0148	COG1236	290	2e-79
Predicted exonuclease of the beta-lactamase fold involved in RNA processing	J	Contig69	BBta0799	COG1236	185	3e-48
Predicted exonuclease of the beta-lactamase fold involved in RNA processing	J	Contig69	BBta3061	COG1236	304	1e-83
Predicted GTPase probable translation factor	J	Contig69	BBta1769	COG0012	496	1.0e-142
Predicted RNA methylase	J	Contig69	BBta1475	COG2263	47.5	7e-06
Predicted rRNA methylase	J	Contig69	BBta2317	COG5459	185	3e-48
Predicted rRNA methylase	J	Contig69	BBta2477	COG1189	279	1e-76
Predicted rRNA methylase (SpoU class)	J	Contig69	BBta2299	COG0219	190	5e-50
Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain	J	Contig69	BBta1881	COG0482	417	1.0e-118
Pseudouridine synthase	J	Contig69	BBta0059	COG0130	249	2e-67
Pseudouridylate synthase	J	Contig69	BBta7335	COG0101	301	3e-83
Pseudouridylate synthases 23S RNA-specific	J	Contig69	BBta0374	COG0564	115	3e-27
Pseudouridylate synthases 23S RNA-specific	J	Contig69	BBta5034	COG0564	245	5e-66
Pseudouridylate synthases 23S RNA-specific	J	Contig69	BBta6759	COG0564	276	2e-75
Putative translation factor (SUA5)	J	Contig69	BBta2387	COG0009	219	2e-58
Putative translation initiation inhibitor yjgF family	J	Contig69	BBta1266	COG0251	82.3	1e-17
Putative translation initiation inhibitor yjgF family	J	Contig69	BBta1346	COG0251	94.6	2e-21
Putative translation initiation inhibitor yjgF family	J	Contig69	BBta1829	COG0251	88.0	1e-19
Putative translation initiation inhibitor yjgF family	J	Contig69	BBta2553	COG0251	68.8	7e-14
Putative translation initiation inhibitor yjgF family	J	Contig69	BBta2672	COG0251	100	3e-23
Putative translation initiation inhibitor yjgF family	J	Contig69	BBta2689	COG0251	74.2	4e-15
Putative translation initiation inhibitor yjgF family	J	Contig69	BBta4751	COG0251	82.6	1e-17
Putative translation initiation inhibitor yjgF family	J	Contig69	BBta4796	COG0251	95.4	1e-21
Putative translation initiation inhibitor yjgF family	J	Contig69	BBta6227	COG0251	88.4	2e-19
Putative translation initiation inhibitor yjgF family	J	Contig69	BBta6508	COG0251	113	5e-27
Queuine/archaeosine tRNA-ribosyltransferase	J	Contig69	BBta4363	COG0343	480	1.0e-137
Ribonuclease D	J	Contig69	BBta0125	COG0349	232	2e-62
Ribonuclease D	J	Contig69	BBta3861	COG0349	334	7e-93
Ribonuclease I	J	Contig69	BBta1732	COG3719	195	2e-51
Ribonucleases G and E	J	Contig69	BBta4204	COG1530	417	1.0e-117
Ribosomal protein L11 methylase	J	Contig69	BBta6159	COG2264	206	1e-54

RIBOSOMAL PROTEINS - LARGE SUBUNIT

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Ribosomal protein L10	J	Contig69	BBta5083	COG0244	138	2e-34
Ribosomal protein L11	J	Contig69	BBta5087	COG0080	193	3e-51
Ribosomal protein L13	J	Contig69	BBta4592	COG0102	194	3e-51
Ribosomal protein L14	J	Contig69	BBta5060	COG0093	180	2e-47
Ribosomal protein L15	J	Contig69	BBta5051	COG0200	118	2e-28
Ribosomal protein L16/L10E	J	Contig69	BBta5063	COG0197	177	3e-46
Ribosomal protein L17	J	Contig69	BBta5045	COG0203	175	9e-46
Ribosomal protein L18	J	Contig69	BBta5054	COG0256	125	1e-30
Ribosomal protein L19	J	Contig69	BBta0364	COG0335	154	2e-39
Ribosomal protein L1	J	Contig69	BBta5086	COG0081	287	5e-79
Ribosomal protein L20	J	Contig69	BBta0215	COG0292	149	4e-38
Ribosomal protein L21	J	Contig69	BBta0427	COG0261	117	3e-28
Ribosomal protein L22	J	Contig69	BBta5065	COG0091	125	8e-31
Ribosomal protein L23	J	Contig69	BBta5068	COG0089	95.6	7e-22
Ribosomal protein L24	J	Contig69	BBta5059	COG0198	92.7	5e-21
Ribosomal protein L25 (general stress protein Ctc)	J	Contig69	BBta1767	COG1825	57.2	7e-10
Ribosomal protein L27	J	Contig69	BBta0426	COG0211	121	1e-29
Ribosomal protein L28	J	Contig69	BBta7548	COG0227	92.7	4e-21
Ribosomal protein L29	J	Contig69	BBta5062	COG0255	52.6	6e-09
Ribosomal protein L2	J	Contig69	BBta5067	COG0090	387	1.0e-109
Ribosomal protein L30/L7E	J	Contig69	BBta5052	COG1841	57.8	1e-10
Ribosomal protein L31	J	Contig69	BBta6943	COG0254	84.1	2e-18
Ribosomal protein L32	J	Contig69	BBta7619	COG0333	46.4	5e-07
Ribosomal protein L33	J	Contig69	BBta4738	COG0267	46.0	5e-07
Ribosomal protein L34	J	Contig69	BBta7324	COG0230	42.2	7e-06
Ribosomal protein L35	J	Contig69	BBta0216	COG0291	51.4	1e-08
Ribosomal protein L3	J	Contig69	BBta5070	COG0087	257	4e-70
Ribosomal protein L4	J	Contig69	BBta5069	COG0088	201	3e-53
Ribosomal protein L5	J	Contig69	BBta5058	COG0094	271	2e-74
Ribosomal protein L6P/L9E	J	Contig69	BBta5055	COG0097	223	8e-60
Ribosomal protein L7/L12	J	Contig69	BBta5082	COG0222	105	1e-24
Ribosomal protein L9	J	Contig69	BBta3812	COG0359	134	3e-33

RIBOSOMAL PROTEINS - SMALL SUBUNIT

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Ribosomal protein S10	J	Contig69	BBta5071	COG0051	155	5e-40
Ribosomal protein S11	J	Contig69	BBta5047	COG0100	178	1e-46
Ribosomal protein S12	J	Contig69	BBta5075	COG0048	179	4e-47
Ribosomal protein S13	J	Contig69	BBta5048	COG0099	156	3e-40
Ribosomal protein S14	J	Contig69	BBta5057	COG0199	66.0	5e-13
Ribosomal protein S15P/S13E	J	Contig69	BBta0060	COG0184	106	5e-25
Ribosomal protein S16	J	Contig69	BBta0367	COG0228	104	2e-24
Ribosomal protein S17	J	Contig69	BBta5061	COG0186	88.7	7e-20
Ribosomal protein S18	J	Contig69	BBta3814	COG0238	88.3	1e-19
Ribosomal protein S19	J	Contig69	BBta5066	COG0185	135	6e-34
Ribosomal protein S1	J	Contig69	BBta0103	COG0539	563	1.0e-161
Ribosomal protein S20	J	Contig69	BBta7874	COG0268	52.2	8e-09
Ribosomal protein S21	J	Contig69	BBta6850	COG0828	51.4	1e-08
Ribosomal protein S21	J	Contig69	BBta7554	COG0828	42.6	7e-06
Ribosomal protein S2	J	Contig69	BBta4517	COG0052	354	3e-99
Ribosomal protein S3	J	Contig69	BBta5064	COG0092	290	6e-80
Ribosomal protein S4 and related proteins	J	Contig69	BBta5388	COG0522	212	2e-56
Ribosomal protein S5	J	Contig69	BBta5053	COG0098	216	1e-57
Ribosomal protein S6	J	Contig69	BBta3815	COG0360	112	1e-26
Ribosomal protein S7	J	Contig69	BBta5074	COG0049	220	3e-59
Ribosomal protein S8	J	Contig69	BBta5056	COG0096	163	5e-42
Ribosomal protein S9	J	Contig69	BBta4591	COG0103	175	2e-45

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	J	Contig69	BBta7545	COG1188	54.5	1e-09
Ribosome-associated protein Y (PSrp-1)	J	Contig69	BBta0120	COG1544	84.5	5e-18
Ribosome-binding factor A	J	Contig69	BBta0058	COG0858	89.9	6e-20
RimM protein required for 16S rRNA processing	J	Contig69	BBta0366	COG0806	157	6e-40
RNase PH	J	Contig69	BBta0186	COG0689	275	2e-75
RNase P protein component	J	Contig69	BBta7325	COG0594	61.8	2e-11
rRNA methylase	J	Contig69	BBta5426	COG0565	226	3e-60
rRNA methylases	J	Contig69	BBta5155	COG0566	192	3e-50
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)	J	Contig69	BBta4366	COG0809	456	1.0e-129
SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase	J	Contig69	BBta2476	COG2265	274	1e-74
Small protein A (tmRNA-binding)	J	Contig69	BBta4635	COG2913	106	8e-25
Superfamily II DNA and RNA helicases	J	Contig69	BBta3974	COG0513	404	1.0e-114
Superfamily II DNA and RNA helicases	J	Contig69	BBta4919	COG0513	329	4e-91
Superfamily II DNA and RNA helicases	J	Contig69	BBta7020	COG0513	409	1.0e-115
Superfamily II DNA and RNA helicases	J	Contig69	BBta7546	COG0513	70.6	7e-13

TRANSLATION FACTORS AND ENZYMES INVOLVED IN TRANSLATION

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
GTPases - translation elongation factors	J	Contig69	BBta5072	COG0050	710	0.0
Methionine aminopeptidase	J	Contig69	BBta7381	COG0024	322	1e-89
Methionyl-tRNA formyltransferase	J	Contig69	BBta3156	COG0223	68.7	3e-13
Methionyl-tRNA formyltransferase	J	Contig69	BBta4344	COG0223	106	1e-24
Methionyl-tRNA formyltransferase	J	Contig69	BBta7336	COG0223	357	1.0e-100
N-formylmethionyl-tRNA deformylase	J	Contig69	BBta7337	COG0242	216	8e-58
Peptidyl-tRNA hydrolase	J	Contig69	BBta1768	COG0193	233	5e-63
Predicted translation initiation factor 2B subunit eIF-2B alpha/beta/delta family	J	Contig69	BBta0648	COG0182	394	1.0e-111
Protein chain release factor A	J	Contig69	BBta7604	COG0216	486	1.0e-138
Protein chain release factor B	J	Contig69	BBta1124	COG1186	121	5e-29
Protein chain release factor B	J	Contig69	BBta1709	COG1186	100	5e-23
Protein chain release factor B	J	Contig69	BBta4200	COG1186	347	4e-97
Ribosome recycling factor	J	Contig69	BBta4514	COG0233	236	5e-64
Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)	J	Contig69	BBta4012	COG0231	136	8e-34
Translation elongation factors (GTPases)	J	Contig69	BBta1805	COG0480	539	1.0e-154
Translation elongation factors (GTPases)	J	Contig69	BBta5073	COG0480	969	0.0
Translation elongation factor Ts	J	Contig69	BBta4516	COG0264	291	4e-80
Translation initiation factor 1 (IF-1)	J	Contig69	BBta7021	COG0361	93.7	2e-21
Translation initiation factor 2 (IF-2; GTPase)	J	Contig69	BBta0057	COG0532	656	0.0
Translation initiation factor 3 (IF-3)	J	Contig69	BBta0218	COG0290	223	9e-60

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
tRNA(1-methyladenosine) methyltransferase and related methyltransferases	J	Contig69	BBta6439	COG2519	39.4	5e-04
tRNA and rRNA cytosine-C5-methylases	J	Contig69	BBta0325	COG0144	261	7e-71
tRNA and rRNA cytosine-C5-methylases	J	Contig69	BBta3613	COG0144	227	1e-60
tRNA delta(2)-isopentenylpyrophosphate transferase	J	Contig69	BBta6088	COG0324	253	1e-68
tRNA-dihydrouridine synthase	J	Contig69	BBta3456	COG0042	267	1e-72
tRNA-dihydrouridine synthase	J	Contig69	BBta4068	COG0042	271	7e-74
tRNA-(guanine-N1)-methyltransferase	J	Contig69	BBta0365	COG0336	331	3e-92
tRNA nucleotidyltransferase/poly(A) polymerase	J	Contig69	BBta2275	COG0617	209	2e-55
Truncated possibly inactive lysyl-tRNA synthetase (class II)	J	Contig69	BBta4013	COG2269	378	1.0e-106

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