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Report for CCDS ID CCDS16417.1

CCDS Status Species Chrom. Gene NCBI Builds Links
16417.1 Reviewed, update pending Mus musculus 2 C1qtnf4 36.1 - 37.1 CCDS HistoryEntrezGene:67445Re-query CCDS DB by GeneID:67445

Public Note
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data. The update results in the completion of a C1q domain, and adds a predicted signal peptide sequence.

Sequence IDs included in CCDS 16417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000036860 ENSMUSP00000044673 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036860Link to Ensembl Protein Viewer:ENSMUSP00000044673Re-query CCDS DB by Nucleotide ID:ENSMUST00000036860Re-query CCDS DB by Protein ID:ENSMUSP00000044673
Original member NCBI NM_026161.2 NP_080437.1 Updated not alive Link to Nucleotide Sequence:NM_026161.2Link to Protein Sequence:NP_080437.1Re-query CCDS DB by Nucleotide ID:NM_026161Re-query CCDS DB by Protein ID:NP_080437
Current member NCBI NM_026161.3 NP_080437.2 Pending alive Link to Nucleotide Sequence:NM_026161.3Link to Protein Sequence:NP_080437.2Re-query CCDS DB by Nucleotide ID:NM_026161Re-query CCDS DB by Protein ID:NP_080437

Chromosomal Locations for CCDS 16417.1

On '+' strand of Chromosome 2 (NC_000068.6)
Genome Browser links: Link to NCBI Map Viewer on chromosome 2Link to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

Chromosome Start Stop Links
2 90729905 90730522 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGCTGCAGCTCGACTACGGCGACACGGTGTGGCTGCGGCTGCACGGCGCTCCGCAGTACGCGCTCGGCG
CGCCGGGCGCCACCTTCAGCGGCTACCTGGTGTACGCGGACGCCGACGCCGACGCGCCTGCGCGCGGCCC
CGCGGCCCCGGAGCCGCGCTCGGCCTTCTCCGCGGCGCGCACGCGCAGCCTGGTGGGCTCGGACGCCGCC
CCCGGCCCGCGCCACCGGCCGTTGGCCTTCGACACCGAGCTGGTAAACATAGGTGGCGACTTCGACGCGG
CGGCCGGCGTGTTCCGCTGCCGCCTGCCGGGAGCCTATTTCTTCTCCTTCACGCTGGGCAAGCTGCCGCG
CAAGACGCTGTCGGTGAAGCTGATGAAGAACCGCGACGAGGTGCAGGCCATGATTTACGACGACGGCGCT
TCGAGGCGCCGTGAGATGCAGAGTCAGAGCGTGATGCTGCCGCTGCGGCGCGGCGACGCCGTCTGGCTAC
TTAGCCACGATCACGATGGCTATGGCGCCTACAGCAACCACGGCAAGTACATCACTTTCTCAGGCTTCCT
GGTGTACCCTGACCTCGCCGCCGCCGGCCCGCCGGCCCTCAAGCCCCCAGAGCTCTGA

Translation (205 aa):
MLQLDYGDTVWLRLHGAPQYALGAPGATFSGYLVYADADADAPARGPAAPEPRSAFSAARTRSLVGSDAA
PGPRHRPLAFDTELVNIGGDFDAAAGVFRCRLPGAYFFSFTLGKLPRKTLSVKLMKNRDEVQAMIYDDGA
SRRREMQSQSVMLPLRRGDAVWLLSHDHDGYGAYSNHGKYITFSGFLVYPDLAAAGPPALKPPEL


Links Key
 Links to:   History report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Map Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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