| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
|---|---|---|---|---|---|---|---|---|---|---|
| 201734 | hypothetical | YPO0846 | LacI-family regulatory protein Similar to Sphingomonas sp transcriptional regulator CcpA TR:Q9KWU0 (EMBL:AB011415) (353 aa) fasta scores: E(): 1.1e-20, 27.2% id in 342 aa, and to Vibrio cholerae LacI-family transcriptional repressor VC2677 TR:Q9KNQ4 (EMBL:AE004333) (335 aa) fasta scores: E(): 6.8e-16, 25.7% id in 338 aa | genbank | 16121154 | NP_404467.1 | 360 | 927126 | 928208 | |
| 201735 | hypothetical | YPO0847 | putative sugar transporter Similar to Escherichia coli hexuronate transport protein ExuT SW:EXUT_ECOLI (P42609) (472 aa) fasta scores: E(): 0, 47.0% id in 419 aa, and to Erwinia chrysanthemi probable galacturonate transport protein ExuT TR:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 0, 44.0% id in 332 aa | genbank | 16121155 | NP_404468.1 | 435 | 928602 | 929909 | |
| 201736 | hypothetical | YPO0848 | putative glucosidase Internal region of CDS similar internal region of Solanum tuberosum alpha-glucosidase TR:O24375 (EMBL:AJ001374) (919 aa) fasta scores: E(): 0, 28.9% id in 610 aa. Full length CDS similar to Bacillus halodurans hypothetical glucosidase BH0704 TR:Q9KEZ5 (EMBL:AP001509) (801 aa) fasta scores: E(): 0, 52.4% id in 757 aa | genbank | 16121156 | NP_404469.1 | 792 | 930057 | 932435 | |
| 201737 | lacI | hypothetical | YPO0849 | lactose operon repressor Similar to Escherichia coli lactose operon repressor LacI SW:LACI_ECOLI (P03023) (360 aa) fasta scores: E(): 0, 43.3% id in 353 aa, and to Klebsiella pneumoniae lactose operon repressor LacI SW:LACI_KLEPN (P06220) (354 aa) fasta scores: E(): 0, 43.9% id in 355 aa | genbank | 16121157 | NP_404470.1 | 357 | 932764 | 933837 |
| 201738 | lamB | hypothetical | YPO0850 | maltoporin precursor porin involved in the transport of maltose and maltodextrins | genbank | 16121158 | NP_404471.1 | 419 | 934109 | 935368 |
| 201739 | hypothetical | YPO0851 | PTS transport protein (partial) Probable gene remnant, similar to C-terminal regions of Escherichia coli phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) glucose-specific IIBC component PtsG SW:PTGB_ECOLI (P05053) (477 aa) fasta scores: E(): 2.3e-11, 54.1% id in 74 aa, and to Salmonella typhimurium PTS system, glucose-specific IIBC component PtsG SW:PTGB_SALTY (P37439) (477 aa) fasta scores: E(): 4.3e-11, 52.7% id in 74 aa | genbank | 16121159 | NP_404472.1 | 103 | 935741 | 936052 | |
| 201740 | bgaB | hypothetical | YPO0852 | puative beta-galactosidase Similar to Clostridium perfringens beta-galactosidase Pbg TR:Q59312 (EMBL:D49537) (676 aa) fasta scores: E(): 0, 51.4% id in 675 aa, and to Bacillus circulans beta-D-galactosidase BgaB TR:Q45093 (EMBL:L03425) (690 aa) fasta scores: E(): 0, 61.6% id in 685 aa | genbank | 16121160 | NP_404473.1 | 686 | 936164 | 938224 |
| 201741 | hypothetical | YPO0853 | putative galactosidase Similar to Pseudomonas fluorescens arabinogalactan endo-1,4-beta-galactosidase GalA SW:GANA_PSEFL (P48841) (376 aa) fasta scores: E(): 0, 33.3% id in 387 aa, and to N-terminus of Thermotoga maritima putative arabinogalactan endo-1,4-beta-galactosidase TM1201 TR:Q9X0S8 (EMBL:AE001777) (606 aa) fasta scores: E(): 0, 50.3% id in 384 aa | genbank | 16121161 | NP_404474.1 | 400 | 938275 | 939477 | |
| 201742 | hypothetical | YPO0854 | putative maltodextrin permease protein Similar to Streptococcus pneumoniae maltodextrin transport system permease protein MalD SW:MALD_STRPN (Q04699) (277 aa) fasta scores: E(): 0, 42.0% id in 274 aa, and to Bacillus halodurans hypothetical maltose/maltodextrin transport system BH2021 TR:Q9KBA7 (EMBL:AP001514) (283 aa) fasta scores: E(): 0, 69.6% id in 280 aa | genbank | 16121162 | NP_404475.1 | 283 | 939482 | 940333 | |
| 201743 | hypothetical | YPO0855 | putative maltodextrin transport permease Similar to Streptococcus pneumoniae maltodextrin transport system permease protein MalC SW:MALC_STRPN (Q04698) (430 aa) fasta scores: E(): 0, 45.5% id in 422 aa, and to Bacillus subtilis hypothetical protein YvfL TR:O07010 (EMBL:Z94043) (421 aa) fasta scores: E(): 0, 67.8% id in 419 aa | genbank | 16121163 | NP_404476.1 | 435 | 940345 | 941652 | |
| 201744 | hypothetical | YPO0856 | putative sugar-binding protein Similar to Streptococcus pneumoniae maltose/maltodextrin-binding protein MalX SW:MALX_STRPN (P29850) (423 aa) fasta scores: E(): 0, 33.9% id in 383 aa, and to Bacillus subtilis hypothetical protein YvfK TR:O07009 (EMBL:Z94043) (421 aa) fasta scores: E(): 0, 49.1% id in 401 aa | genbank | 16121164 | NP_404477.1 | 420 | 941812 | 943074 | |
| 201745 | hypothetical | YPO0857 | sugar transport ATP-binding protein Similar to Agrobacterium radiobacter lactose ABC transporter, ATP-binding protein LacK SW:LACK_AGRRD (Q01937) (363 aa) fasta scores: E(): 0, 55.6% id in 365 aa, and to Escherichia coli maltose/maltodextrin ABC transporter, ATP-binding protein MalK SW:MALK_ECOLI (P02914) (371 aa) fasta scores: E(): 0, 52.1% id in 359 aa. Similar to YPO3712 (52.7% identity in 357 aa overlap), YPO3469 (51.6% identity in 372 aa overlap) and YPO1896 (59.1% identity in 286 aa overlap). | genbank | 16121165 | NP_404478.1 | 366 | 943410 | 944510 | |
| 201746 | hypothetical | YPO0858 | sugar transport ATP-binding protein Similar to Escherichia coli ribose ABC transporter, ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0, 43.0% id in 493 aa, and to Vibrio cholerae ribose ABC transporter, ATP-binding protein VCA0128 TR:Q9KN37 (EMBL:AE004354) (500 aa) fasta scores: E(): 0, 43.1% id in 490 aa | genbank | 16121166 | NP_404479.1 | 502 | 945059 | 946567 | |
| 201747 | hypothetical | YPO0859 | sugar transport system permease Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 0, 49.4% id in 312 aa, and to Vibrio cholerae ribose ABC transporter, permease protein VCA0129 TR:Q9KN36 (EMBL:AE004354) (332 aa) fasta scores: E(): 0, 52.4% id in 290 aa | genbank | 16121167 | NP_404480.1 | 336 | 946633 | 947643 | |
| 201748 | hypothetical | YPO0860 | sugar-binding periplasmic protein Similar to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 2.2e-17, 32.5% id in 295 aa, and to Bacillus halodurans sugar ABC transporter BH2323 TR:Q9KAG4 (EMBL:AP001515) (323 aa) fasta scores: E(): 2.6e-24, 36.3% id in 251 aa | genbank | 16121168 | NP_404481.1 | 333 | 948078 | 949079 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201749 | hypothetical | YPO0862 | hypothetical protein No significant database matches to the full length CDS | genbank | 16121169 | NP_404482.1 | 172 | 949858 | 950376 | |
| 201750 | hypothetical | YPO0863 | putative lipoprotein Similar to Escherichia coli hypothetical lipoprotein YaeF SW:YAEF_ECOLI (P37056) (274 aa) fasta scores: E(): 0, 43.1% id in 253 aa | genbank | 16121170 | NP_404483.1 | 285 | 950752 | 951609 | |
| 201751 | hypothetical | YPO0864 | hypothetical protein Similar to Escherichia coli hypothetical protein YqjI SW:YQJI_ECOLI (Q46872) (207 aa) fasta scores: E(): 1.1e-17, 36.3% id in 201 aa | genbank | 16121171 | NP_404484.1 | 226 | 952033 | 952713 | |
| 201752 | hypothetical | YPO0865 | hypothetical protein no significant database hits | genbank | 16121172 | NP_404485.1 | 106 | 952713 | 953033 | |
| 201753 | hypothetical | YPO0866 | hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA1508 TR:AAG04897 (EMBL:AE004579) (86 aa) fasta scores: E(): 9.6e-07, 39.5% id in 76 aa, and to Vibrio cholerae hypothetical protein VCA0105 TR:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 1, 28.4% id in 95 aa. Alternative translational start at codon 14 | genbank | 16121173 | NP_404486.1 | 101 | 953116 | 953421 | |
| 201754 | hypothetical | YPO0867 | hypothetical protein No significant database matches to the full length CDS. N-terminus similar to N-terminus of Aquifex aeolicus possible NADH dehydrogenase I chain M NUOM2 TR:O67390 (EMBL:AE000737) (501 aa) fasta scores: E(): 0.051, 23.8% id in 168 aa. Internal region of CDS is similar to internal region of Ureaplasma urealyticum hypothetical membrane lipoprotein UU384 TR:Q9PQA6 (EMBL:AE002136) (365 aa) fasta scores: E(): 0.37, 22.2% id in 203 aa | genbank | 16121174 | NP_404487.1 | 259 | 953638 | 954417 | |
| 201755 | hypothetical | YPO0868 | hypothetical protein No significant database matches | genbank | 16121175 | NP_404488.1 | 70 | 954498 | 954710 | |
| 201756 | hypothetical | YPO0869 | hypothetical protein No significant database hits to the full length CDS. Weakly similar to an internal region of Burkholderia pseudomallei hypothetical protein TR:Q9ZF74 (EMBL:AF110185) (541 aa) fasta scores: E(): 0.85, 29.2% id in 185 aa | genbank | 16121176 | NP_404489.1 | 238 | 955022 | 955738 | |
| 201757 | hypothetical | YPO0870 | hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA5441 TR:AAG08826 (EMBL:AE004957) (733 aa) fasta scores: E(): 0, 33.9% id in 749 aa | genbank | 16121177 | NP_404490.1 | 774 | 955759 | 958083 | |
| 201758 | hypothetical | YPO0871 | putative colicin immunity protein Similar to Escherichia coli colicin D-157 immunity protein Cdi TR:O52990 (EMBL:Y10412) (87 aa) fasta scores: E(): 0.0034, 27.9% id in 86 aa. C-terminus is identical to YPO3653 (100.0% identity in 39 aa overlap). | genbank | 16121178 | NP_404491.1 | 94 | 958328 | 958612 | |
| 201759 | hypothetical | YPO0872 | hypothetical protein No significant database hits to the full length CDS. Weakly similar to the C-terminus of Bacillus subtilis hypothetical protein YxzC TR:O32286 (EMBL:Z99124) (122 aa) fasta scores: E(): 0.00019, 29.7% id in 74 aa | genbank | 16121179 | NP_404492.1 | 85 | 958659 | 958916 | |
| 201760 | hypothetical | YPO0873 | hypothetical protein Weakly similar to internal regions of Pseudomonas aeruginosa pyocin (killer protein) S1 SW:PYS1_PSEAE (Q06583) (617 aa) fasta scores: E(): 0.32, 24.6% id in 403 aa. Similar to the N-terminus of YPO1484 (62.1% identity in 124 aa overlap). | genbank | 16121180 | NP_404493.1 | 512 | 959426 | 960964 | |
| 201761 | hypothetical | YPO0874 | hypothetical protein Weakly similar to Halobacterium sp (strain NRC-1) hypothetical protein TR:AAG20974 (EMBL:AE005164) (424 aa) fasta scores: E(): 5.2e-07, 26.0% id in 362 aa, and to Neisseria meningitidis hypothetical protein NMB1759 TR:Q9JY39 (EMBL:AE002525) (454 aa) fasta scores: E(): 3.7e-05, 24.5% id in 330 aa | genbank | 16121181 | NP_404494.1 | 380 | 961468 | 962610 | |
| 201762 | hypothetical | YPO0875 | hypothetical protein doubtful CDS with no significant database hits to the full length CDS. Similarity to internal region of to Arabidopsis thaliana cytochrome P450 TR:Q9LTM6 (EMBL:AB024038) (502 aa) fasta scores: E(): 5.1, 27.3% id in 128 aa | genbank | 16121182 | NP_404495.1 | 121 | 962879 | 963244 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201763 | hypothetical | YPO0876 | hypothetical protein doubtful CDS with no significant database hits | genbank | 16121183 | NP_404496.1 | 78 | 963257 | 963493 | |
| 201764 | hypothetical | YPO0877 | hypothetical protein doubtful CDS with no significant database hits | genbank | 16121184 | NP_404497.1 | 110 | 963499 | 963831 | |
| 201765 | hypothetical | YPO0878 | putative regulatory protein Similar to Escherichia coli prophage CP4-57 regulatory protein AlpA SW:ALPA_ECOLI (P33997) (70 aa) fasta scores: E(): 0.0042, 29.3% id in 58 aa, and to Vibrio cholerae putative transcriptional regulator VC1809 TR:Q9KR38 (EMBL:AE004257) (76 aa) fasta scores: E(): 3.6e-09, 49.1% id in 57 aa, and to Yersinia pestis hypothetical protein TR:Q9ZFZ8 (EMBL:AF091251) (93 aa) fasta scores: E(): 4.1e-06, 39.0% id in 59 aa | genbank | 16121185 | NP_404498.1 | 66 | 964013 | 964213 | |
| 201766 | hypothetical | YPO0879 | hypothetical protein Weakly similar to Salmonella typhimurium LT2 hypothetical protein STMD1.84 TR:Q9L6S7 (EMBL:AF233324) (105 aa) fasta scores: E(): 6.6, 23.4% id in 94 aa, and to Bacteriophage N15 protein GP49 TR:O64357 (EMBL:AF064539) (103 aa) fasta scores: E(): 9.2, 24.7% id in 93 aa | genbank | 16121186 | NP_404499.1 | 108 | 964372 | 964698 | |
| 201767 | hypothetical | YPO0880 | putative primase N-terminus similar to C-terminus of Escherichia coli DNA primase TraC SW:TRC4_ECOLI (P27189) (1061 aa) fasta scores: E(): 2.8e-08, 30.0% id in 293 aa. Full length CDS similar to Bacteriophage P4 putative P4-specific DNA primase SW:PRIM_BPP4 (P10277) (777 aa) fasta scores: E(): 0, 40.5% id in 790 aa | genbank | 16121187 | NP_404500.1 | 763 | 964998 | 967289 | |
| 201768 | hypothetical | YPO0881 | hypothetical protein Similar to Escherichia coli hypothetical protein YgiT SW:YGIT_ECOLI (Q46864) (131 aa) fasta scores: E(): 1.3e-31, 60.3% id in 131 aa, and to Alcaligenes eutrophus hypothetical protein TR:Q9ZAL4 (EMBL:Y10831) (133 aa) fasta scores: E(): 1.1e-28, 55.0% id in 131 aa | genbank | 16121188 | NP_404501.1 | 132 | 967689 | 968087 | |
| 201769 | hypothetical | YPO0882 | hypothetical protein Similar to Escherichia coli hypothetical protein YgiU SW:YGIU_ECOLI (Q46865) (98 aa) fasta scores: E(): 1.4e-24, 67.0% id in 97 aa, and to Alcaligenes eutrophus hypothetical protein TR:Q9ZAL5 (EMBL:Y10831) (98 aa) fasta scores: E(): 3.5e-21, 57.1% id in 98 aa | genbank | 16121189 | NP_404502.1 | 98 | 968087 | 968383 | |
| 201770 | hypothetical | YPO0883 | putative DNA binding protein Similar to Xylella fastidiosa hypothetical protein XF0534 TR:Q9PFX2 (EMBL:AE003901) (114 aa) fasta scores: E(): 0.0049, 30.5% id in 118 aa. Similar to YPO4028 (97.5% identity in 120 aa overlap) | genbank | 16121190 | NP_404503.1 | 120 | 968547 | 968909 | |
| 201771 | hypothetical | YPO0884 | hypothetical protein Weakly similar to Methanococcus jannaschii hypothetical protein MJ0071 SW:Y071_METJA (Q60374) (90 aa) fasta scores: E(): 0.022, 28.9% id in 83 aa, and to Escherichia coli hypothetical protein RelE SW:RELE_ECOLI (P07008) (95 aa) fasta scores: E(): 0.13, 22.4% id in 85 aa | genbank | 16121191 | NP_404504.1 | 86 | 968972 | 969232 | |
| 201772 | int | hypothetical | YPO0887 | integrase Similar to Shigella flexneri P4-like integrase Int TR:Q9XCI7 (EMBL:AF141323) (394 aa) fasta scores: E(): 0, 65.2% id in 394 aa, and to Escherichia coli CP4-like integrase Int TR:O85610 (EMBL:AF071034) (393 aa) fasta scores: E(): 0, 65.6% id in 389 aa. Similar to YPO4033 (62.4% identity in 386 aa overlap). | genbank | 16121192 | NP_404505.1 | 404 | 970097 | 971311 |
| 201773 | lysS | hypothetical | YPO0888 | lysyl-tRNA synthetase catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA | genbank | 16121193 | NP_404506.1 | 505 | 971744 | 973261 |
| 201774 | prfB | hypothetical | YPO0889 | peptide chain release factor 2 Directs the termination of translation in response to the peptide chain termination codons UGA and UAA | genbank | 16121194 | NP_404507.1 | 366 | 973271 | 974294 |
| 201775 | recJ | hypothetical | YPO0890 | single-stranded-DNA-specific exonuclease Similar to Escherichia coli single-stranded-DNA-specific exonuclease RecJ SW:RECJ_ECOLI (P21893) (577 aa) fasta scores: E(): 0, 75.4% id in 573 aa, and to Erwinia chrysanthemi single-stranded-DNA-specific exonuclease RecJ SW:RECJ_ERWCH (P39693) (575 aa) fasta scores: E(): 0, 79.0% id in 572 aa | genbank | 16121195 | NP_404508.1 | 577 | 974548 | 976281 |
| 201776 | dsbC | hypothetical | YPO0891 | thiol:disulfide interchange protein (DsbC) Similar to Erwinia chrysanthemi thiol:disulfide interchange protein DsbC SW:DSBC_ERWCH (P39691) (238 aa) fasta scores: E(): 0, 73.1% id in 238 aa, and to Escherichia coli thiol:disulfide interchange protein dsbc precursor DsbC SW:DSBC_ECOLI (P21892) (236 aa) fasta scores: E(): 0, 68.0% id in 231 aa | genbank | 16121196 | NP_404509.1 | 238 | 976288 | 977004 |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201777 | xerD | hypothetical | YPO0892 | tyrosine recombinase Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerC binding sites by a short central region, forming t | genbank | 16121197 | NP_404510.1 | 299 | 977035 | 977934 |
| 201778 | fldB | hypothetical | YPO0893 | flavodoxin An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group | genbank | 16121198 | NP_404511.1 | 172 | 978041 | 978559 |
| 201779 | creD | hypothetical | YPO0894 | hypothetical protein Similar to Escherichia coli inner membrane protein CreD SW:CRED_ECOLI (P08369) (450 aa) fasta scores: E(): 0, 47.1% id in 429 aa, and to Aeromonas hydrophila putative inner membrane protein BlrD TR:Q9KGR5 (EMBL:AJ276632) (449 aa) fasta scores: E(): 0, 46.9% id in 452 aa | genbank | 16121199 | NP_404512.1 | 492 | 978649 | 980127 |
| 201780 | creC | hypothetical | YPO0895 | putative histidine kinase sensor Similar to Myxococcus xanthus developmental histidine kinase sensor SasS TR:O52223 (EMBL:AF029787) (497 aa) fasta scores: E(): 1.4e-23, 28.2% id in 485 aa, and to Escherichia coli sensor protein CreC SW:CREC_ECOLI (P08401) (474 aa) fasta scores: E(): 0, 58.3% id in 470 aa. Probable sensor kinase protein of two-component regulatory system | genbank | 16121200 | NP_404513.1 | 472 | 980227 | 981645 |
| 201781 | creB | hypothetical | YPO0896 | putative response regulator Similar to Aeromonas jandaei beta-lactamase production response regulator protein BlrA TR:P97015 (EMBL:U67069) (223 aa) fasta scores: E(): 0, 60.3% id in 229 aa, and to Escherichia coli transcriptional regulatory protein CreB SW:CREB_ECOLI (P08368) (229 aa) fasta scores: E(): 0, 59.4% id in 229 aa. Probable response regulator protein of two-component regulatory system | genbank | 16121201 | NP_404514.1 | 233 | 981670 | 982371 |
| 201782 | hypothetical | YPO0896a | hypothetical protein Similar to Escherichia coli hypothetical protein YgfX SW:YGFX_ECOLI (Q46824) (135 aa) fasta scores: E(): 1.1e-28, 53.7% id in 123 aa, 53.7% id in 123 aa, and to enterohemorrhagic Escherichia coli O157:H7 hypothetical protein Z4234 TR:AAG58024 (EMBL:AE005520) (135 aa) fasta scores: E(): 3.9e-28, 52.8% id in 123 aa | genbank | 16121202 | NP_404515.1 | 141 | 982368 | 982793 | |
| 201783 | hypothetical | YPO0897 | hypothetical protein Similar to Escherichia coli hypothetical protein YgfY SW:YGFY_ECOLI (Q46825) (88 aa) fasta scores: E(): 0, 81.8% id in 88 aa, and to Vibrio cholerae hypothetical protein VC2471 TR:Q9KPA2 (EMBL:AE004316) (86 aa) fasta scores: E(): 3.1e-16, 53.8% id in 80 aa | genbank | 16121203 | NP_404516.1 | 88 | 982774 | 983040 | |
| 201784 | hypothetical | YPO0898 | hypothetical protein Similar to Escherichia coli hypothetical protein YgfZ SW:UP14_ECOLI (P39179) (325 aa) fasta scores: E(): 0, 68.2% id in 324 aa, and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU435 TR:BAB13133 (EMBL:AP001119) (319 aa) fasta scores: E(): 0, 39.3% id in 295 aa | genbank | 16121204 | NP_404517.1 | 330 | 983357 | 984349 | |
| 201785 | hypothetical | YPO0899 | hypothetical protein Similar to Streptomyces coelicolor putative integral membrane protein SCD6.09C TR:Q9KZZ5 (EMBL:AL353815) (169 aa) fasta scores: E(): 3e-18, 40.6% id in 160 aa | genbank | 16121205 | NP_404518.1 | 165 | 984422 | 984919 | |
| 201786 | hypothetical | YPO0900 | putative hemolysin III Similar to Bacillus cereus hemolysin III SW:HLY3_BACCE (P54176) (219 aa) fasta scores: E(): 6.7e-33, 46.0% id in 202 aa, and to Escherichia coli hypothetical protein YqfA SW:YQFA_ECOLI (Q46827) (219 aa) fasta scores: E(): 0, 76.7% id in 206 aa | genbank | 16121206 | NP_404519.1 | 233 | 985177 | 985878 | |
| 201787 | hypothetical | YPO0901 | hypothetical protein No significant database matches. Similar to YPO1686 (61.0% identity in 354 aa overlap). | genbank | 16121207 | NP_404520.1 | 381 | 986080 | 987225 | |
| 201788 | hypothetical | YPO0902 | putative surface protein (partial) Similar to C-terminal regions of Haemophilus influenzae adhesin Hia TR:Q48152 (EMBL:U38617) (1098 aa) fasta scores: E(): 3.6e-09, 23.0% id in 709 aa, and Xylella fastidiosa surface protein XF1981 TR:Q9PC04 (EMBL:AE004017) (1190 aa) fasta scores: E(): 0, 36.7% id in 671 aa. CDS is similar to the C-terminal regions of surface proteins and does not have an N-terminal signal sequence. Therefore it is unlikely to be exported and is a possible gene fragment. Upstream of the CDS is a region of ow GC% that is possibly laterally acquired DNA and may account for the truncation. The N- and C-terminal region of the CDS are similar to YPO1684 (53.0% identity in 658 aa overlap), and the C-terminus of the CDS is similar YPO1685 (79.2% identity in 144 aa overlap). | genbank | 16121208 | NP_404521.1 | 658 | 987287 | 989263 | |
| 201789 | hypothetical | YPO0904 | hypothetical protein no significant database hits | genbank | 16121209 | NP_404522.1 | 145 | 990473 | 990910 | |
| 201790 | gcvP | hypothetical | YPO0905 | glycine dehydrogenase acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine | genbank | 16121210 | NP_404523.1 | 959 | 991288 | 994167 |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201791 | gcsH | hypothetical | YPO0906 | glycine cleavage system protein H part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to | genbank | 16121211 | NP_404524.1 | 128 | 994379 | 994765 |
| 201792 | gcvT | hypothetical | YPO0907 | aminomethyltransferase catalyzes the formation of dihydrolipoylprotein from S-aminomethyldihydrolipoprotein in the glycine cleavage system | genbank | 16121212 | NP_404525.1 | 365 | 994834 | 995931 |
| 201793 | visC | hypothetical | YPO0908 | hypothetical protein Similar to Escherichia coli hypothetical VisC protein ( which is required for the biosynthesis of ubiquinone) SW:VISC_ECOLI (P25535) (400 aa) fasta scores: E(): 0, 71.4% id in 402 aa, and to Escherichia coli 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase UbiF SW:UBIF_ECOLI (P75728) (391 aa) fasta scores: E(): 0, 38.2% id in 395 aa | genbank | 16121213 | NP_404526.1 | 406 | 996652 | 997872 |
| 201794 | ubiH | hypothetical | YPO0909 | 2-octaprenyl-6-methoxyphenyl hydroxylase Similar to Escherichia coli 2-octaprenyl-6-methoxyphenol hydroxylase UbiH SW:UBIH_ECOLI (P25534) (392 aa) fasta scores: E(): 0, 66.1% id in 392 aa, and to Vibrio cholerae putative 2-octaprenyl-6-methoxyphenol hydroxylase VC2475 TR:Q9KP98 (EMBL:AE004317) (402 aa) fasta scores: E(): 0, 50.0% id in 394 aa | genbank | 16121214 | NP_404527.1 | 392 | 998045 | 999223 |
| 201795 | pepP | hypothetical | YPO0910 | proline-specific aminopeptidase Similar to Escherichia coli proline-specific (Xaa-Pro) aminopeptidase PepP SW:AMPP_ECOLI (P15034) (440 aa) fasta scores: E(): 0, 82.0% id in 433 aa, and to Shigella flexneri aminopeptidase PepP TR:O52579 (EMBL:AF041033) (441 aa) fasta scores: E(): 0, 81.8% id in 434 aa | genbank | 16121215 | NP_404528.1 | 437 | 999292 | 1000605 |
| 201796 | hypothetical | YPO0911 | hypothetical protein Similar to Escherichia coli hypothetical protein YgfB SW:YGFB_ECOLI (P25533) (194 aa) fasta scores: E(): 0, 66.7% id in 192 aa, and to Haemophilus influenzae hypothetical protein HI0817 SW:YGFB_HAEIN (P44882) (182 aa) fasta scores: E(): 8.9e-29, 43.9% id in 187 aa | genbank | 16121216 | NP_404529.1 | 192 | 1000693 | 1001271 | |
| 201797 | hypothetical | YPO0912 | hypothetical protein Similar to Escherichia coli hypothetical protein YgfE SW:YGFE_ECOLI (P45580) (109 aa) fasta scores: E(): 0, 79.8% id in 109 aa, and to Vibrio cholerae hypothetical protein VC2478 TR:Q9KP95 (EMBL:AE004317) (102 aa) fasta scores: E(): 2.1e-11, 41.5% id in 94 aa | genbank | 16121217 | NP_404530.1 | 109 | 1001608 | 1001937 | |
| 201798 | hypothetical | YPO0913 | putative 5-formyltetrahydrofolate cyclo-ligase-family protein Similar to Escherichia coli hypothetical protein YgfA SW:YGFA_ECOLI (P09160) (182 aa) fasta scores: E(): 0, 69.6% id in 181 aa, and to Oryctolagus cuniculus 5-formyltetrahydrofolate cyclo-ligase SW:FTHC_RABIT (P80405) (201 aa) fasta scores: E(): 2.4e-13, 32.1% id in 187 aa | genbank | 16121218 | NP_404531.1 | 198 | 1002301 | 1002897 | |
| 201799 | serA | hypothetical | YPO0914 | D-3-phosphoglycerate dehydrogenase Similar to Escherichia coli D-3-phosphoglycerate dehydrogenase SerA SW:SERA_ECOLI (P08328) (409 aa) fasta scores: E(): 0, 83.7% id in 412 aa, and to Vibrio cholerae probable D-3-phosphoglycerate dehydrogenase VC2481 TR:Q9KP92 (EMBL:AE004317) (409 aa) fasta scores: E(): 0, 74.3% id in 413 aa | genbank | 16121219 | NP_404532.1 | 413 | 1003162 | 1004403 |
| 201800 | rpiA | hypothetical | YPO0915 | ribose-5-phosphate isomerase A Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway | genbank | 16121220 | NP_404533.1 | 218 | 1004710 | 1005366 |
| 201801 | iciA | hypothetical | YPO0916 | chromosome replication initiation inhibitor protein Specific inhibitor of chromosomal initiation of replication in vitro. Binds the three 13-mers in the origin (oriC) to block initiation of replication | genbank | 16121221 | NP_404534.1 | 302 | 1005708 | 1006616 |
| 201802 | hypothetical | YPO0917 | hypothetical protein Similar to Edwardsiella ictaluri hypothetical protein YggE SW:YGGE_EDWIC (O52400) (239 aa) fasta scores: E(): 0, 66.5% id in 239 aa, and to Escherichia coli hypothetical protein YggE SW:YGGE_ECOLI (P11668) (246 aa) fasta scores: E(): 0, 62.9% id in 251 aa | genbank | 16121222 | NP_404535.1 | 259 | 1006627 | 1007406 | |
| 201803 | hypothetical | YPO0918 | arginine exporter protein Involved in the export of arginine | genbank | 16121223 | NP_404536.1 | 205 | 1007596 | 1008213 | |
| 201804 | hypothetical | YPO0919 | hypothetical protein Similar to Edwardsiella ictaluri hypothetical protein YggB SW:YGGB_EDWIC (O52401) (286 aa) fasta scores: E(): 0, 72.4% id in 286 aa, and to Escherichia coli hypothetical protein YggB SW:YGGB_ECOLI (P11666) (286 aa) fasta scores: E(): 0, 66.7% id in 285 aa | genbank | 16121224 | NP_404537.1 | 289 | 1008476 | 1009345 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201805 | fbaA | hypothetical | YPO0920 | fructose-bisphosphate aldolase catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate | genbank | 16121225 | NP_404538.1 | 359 | 1009783 | 1010862 |
| 201806 | pgk | hypothetical | YPO0921 | phosphoglycerate kinase catalyzes the formation of 3-phospho-D-glyceroyl phosphate from 3-phospho-D-glycerate in glycolysis | genbank | 16121226 | NP_404539.1 | 387 | 1010982 | 1012145 |
| 201807 | epd | hypothetical | YPO0922 | D-erythrose 4-phosphate dehydrogenase catalyzes the formation of 4-phosphoerythronate from D-erythrose 4-phosphate | genbank | 16121227 | NP_404540.1 | 338 | 1012248 | 1013264 |
| 201808 | hypothetical | YPO0923 | transposase/IS protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein, IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0, 47.4% id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0, 99.6% id in 260 aa. | genbank | 16121228 | NP_404541.1 | 260 | 1013579 | 1014361 | |
| 201809 | hypothetical | YPO0924 | transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27, 33.1% id in 329 aa. Identical to the previously sequenced Yersinia pestis, Yersinia pseudotuberculosis, and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0, 100.0% id in 340 aa | genbank | 16121229 | NP_404542.1 | 340 | 1014358 | 1015380 | |
| 201810 | tnp | hypothetical | YPO0925 | transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200, TnpA, SW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0, 93.4% id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase Tn TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0, 99.3% id in 152 aa | genbank | 16121230 | NP_404543.1 | 152 | 1015564 | 1016022 |
| 201811 | tktA | hypothetical | YPO0926 | transketolase catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyxeraldehyde 3-phosphate | genbank | 16121231 | NP_404544.1 | 664 | 1016330 | 1018324 |
| 201812 | hypothetical | YPO0927 | putative lipoprotein Similar to Escherichia coli hypothetical protein YggG SW:YGGG_ECOLI (P25894) (252 aa) fasta scores: E(): 0, 69.1% id in 249 aa, and to Pseudomonas aeruginosa conserved hypothetical protein PA0277 TR:AAG03666 (EMBL:AE004465) (252 aa) fasta scores: E(): 0, 63.9% id in 252 aa | genbank | 16121232 | NP_404545.1 | 250 | 1018815 | 1019567 | |
| 201813 | hypothetical | YPO0928 | putative Rieske protein Similar to Pseudomonas putida benzene 1,2-dioxygenase system ferredoxin component BedB SW:BEDB_PSEPU (Q07947) (107 aa) fasta scores: E(): 6.6e-12, 35.8% id in 106 aa, and to Acinetobacter sp ADP1 hypothetical protein TR:O24846 (EMBL:AF009672) (101 aa) fasta scores: E(): 1.9e-19, 42.6% id in 101 aa | genbank | 16121233 | NP_404546.1 | 106 | 1019857 | 1020177 | |
| 201814 | speA | hypothetical | YPO0929 | arginine decarboxylase catalyzes the fromation of agmatine from arginine in putrescine and spermidine biosynthesis | genbank | 16121234 | NP_404547.1 | 659 | 1020337 | 1022316 |
| 201815 | metK | hypothetical | YPO0931 | S-adenosylmethionine synthetase methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP | genbank | 16121235 | NP_404548.1 | 384 | 1023523 | 1024677 |
| 201816 | hypothetical | YPO0932 | hypothetical protein Similar to Escherichia coli hypothetical protein SprT SW:SPRT_ECOLI (P39902) (165 aa) fasta scores: E(): 0, 69.8% id in 162 aa, and to Haemophilus influenzae hypothetical protein HI1173 SW:SPRT_HAEIN (P44119) (156 aa) fasta scores: E(): 1.8e-30, 52.0% id in 148 aa | genbank | 16121236 | NP_404549.1 | 170 | 1024870 | 1025382 | |
| 201817 | endA | hypothetical | YPO0933 | endonuclease I Similar to Escherichia coli endonuclease I EndA SW:END1_ECOLI (P25736) (235 aa) fasta scores: E(): 0, 74.0% id in 235 aa, and to Erwinia chrysanthemi nuclease NucM SW:NUCM_ERWCH (P37994) (266 aa) fasta scores: E(): 0, 75.7% id in 230 aa. Orthologues are periplasmic proteins. CDS is predicted to have an uncleavable N-terminal signal sequence. Effect on the function is unknown. | genbank | 16121237 | NP_404550.1 | 235 | 1025480 | 1026187 |
| 201818 | hypothetical | YPO0934 | hypothetical protein Similar to Escherichia coli hypothetical protein YggJ SW:YGGJ_ECOLI (P37912) (243 aa) fasta scores: E(): 0, 78.2% id in 243 aa, and to Haemophilus influenzae hypothetical protein HI0303 SW:YGGJ_HAEIN (P44627) (245 aa) fasta scores: E(): 0, 68.4% id in 244 aa | genbank | 16121238 | NP_404551.1 | 243 | 1026439 | 1027170 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201819 | gshB | hypothetical | YPO0935 | glutathione synthetase The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione | genbank | 16121239 | NP_404552.1 | 319 | 1027196 | 1028155 |
| 201820 | hypothetical | YPO0936 | hypothetical protein Similar to Escherichia coli protein YqgE SW:YQGE_ECOLI (P52049) (187 aa) fasta scores: E(): 0, 66.8% id in 187 aa, and to Vibrio cholerae hypothetical protein VC0467 TR:Q9KUP8 (EMBL:AE004133) (200 aa) fasta scores: E(): 0, 51.6% id in 190 aa | genbank | 16121240 | NP_404553.1 | 187 | 1028271 | 1028834 | |
| 201821 | hypothetical | YPO0937 | Holliday junction resolvase-like protein similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function | genbank | 16121241 | NP_404554.1 | 140 | 1028834 | 1029256 | |
| 201822 | hypothetical | YPO0938 | putative carbon-nitrogen hydrolase Similar to Pseudomonas aeruginosa probable hydratase PA0293 TR:AAG03682 (EMBL:AE004467) (292 aa) fasta scores: E(): 0, 63.9% id in 291 aa, and to eukaryoyic Lycopersicon esculentum (Tomato) beta-alanine synthase TR:Q9XGI9 (EMBL:Y19104) (300 aa) fasta scores: E(): 0, 60.1% id in 288 aa | genbank | 16121242 | NP_404555.1 | 294 | 1029436 | 1030320 | |
| 201823 | hypothetical | YPO0939 | hypothetical protein Similar to Pseudomonas aeruginosa conserved hypothetical protein PA0292 TR:AAG03681 (EMBL:AE004467) (368 aa) fasta scores: E(): 0, 57.5% id in 358 aa, and to eukaryotic Arabidopsis thaliana hypothetical protein T22D6_110 TR:Q9LEZ0 (EMBL:AL357612) (383 aa) fasta scores: E(): 0, 51.4% id in 368 aa | genbank | 16121243 | NP_404556.1 | 371 | 1030324 | 1031439 | |
| 201824 | hypothetical | YPO0940 | hypothetical protein Similar to Pseudomonas aeruginosa twitching mobility protein PilT SW:PILT_PSEAE (P24559) (344 aa) fasta scores: E(): 0, 45.2% id in 330 aa, and to Escherichia coli hypothetical protein YggR SW:YGGR_ECOLI (P52052) (326 aa) fasta scores: E(): 0, 56.3% id in 325 aa | genbank | 16121244 | NP_404557.1 | 358 | 1031548 | 1032624 | |
| 201825 | hypothetical | YPO0941 | hypothetical protein Similar to Escherichia coli hypothetical protein YggS SW:YGGS_ECOLI (P52054) (234 aa) fasta scores: E(): 0, 69.0% id in 232 aa, and to Vibrio cholerae hypothetical protein VC0461 TR:Q9KUQ4 (EMBL:AE004132) (236 aa) fasta scores: E(): 0, 62.2% id in 233 aa | genbank | 16121245 | NP_404558.1 | 232 | 1032692 | 1033390 | |
| 201826 | proC | hypothetical | YPO0942 | pyrroline-5-carboxylate reductase catalyzes the formation of L-proline from pyrroline-5-carboxylate | genbank | 16121246 | NP_404559.1 | 273 | 1033523 | 1034344 |
| 201827 | hypothetical | YPO0943 | hypothetical protein Similar to Escherichia coli hypothetical protein YggT SW:YGGT_ECOLI (P52058) (188 aa) fasta scores: E(): 0, 58.7% id in 184 aa, and to Vibrio cholerae hypothetical protein VC0459 vc0459 TR:Q9KUQ6 (EMBL:AE004132) (185 aa) fasta scores: E(): 0, 54.6% id in 185 aa | genbank | 16121247 | NP_404560.1 | 184 | 1034632 | 1035186 | |
| 201828 | hypothetical | YPO0944 | hypothetical protein Similar to Escherichia coli hypothetical protein YggU SW:YGGU_ECOLI (P52060) (96 aa) fasta scores: E(): 1.5e-29, 78.9% id in 95 aa, and to Vibrio cholerae hypothetical protein VC0458 TR:Q9KUQ7 (EMBL:AE004132) (96 aa) fasta scores: E(): 1.2e-22, 65.9% id in 88 aa | genbank | 16121248 | NP_404561.1 | 96 | 1035183 | 1035473 | |
| 201829 | hypothetical | YPO0945 | putative deoxyribonucleotide triphosphate pyrophosphatase HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine | genbank | 16121249 | NP_404562.1 | 197 | 1035573 | 1036166 | |
| 201830 | hypothetical | YPO0946 | coproporphyrinogen III oxidase catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III | genbank | 16121250 | NP_404563.1 | 376 | 1036159 | 1037289 | |
| 201831 | hypothetical | YPO0947 | putative virulence determinant No significant database matches to the full length CDS. Internal regions similar to Vibrio cholerae RTX toxin gene cluster protein RtxA TR:Q9X4W2 (EMBL:AF119150) (4545 aa) fasta scores: E(): 1.9e-10, 32.4% id in 241 aa, and to Rhizobium leguminosarum putative bacteriocin TR:O33527 (EMBL:AJ001518) (958 aa) fasta scores: E(): 8.4e-05, 21.2% id in 900 aa. CDS DNA encoding protein has a low GC content, 37.22% | genbank | 16121251 | NP_404564.1 | 3110 | 1037479 | 1046811 | |
| 201832 | hypothetical | YPO0949 | glutaminase catalyzes the formation of glutamate from glutamine | genbank | 16121252 | NP_404565.1 | 308 | 1048155 | 1049081 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201833 | hypothetical | YPO0950 | hypothetical protein Similar to Escherichia coli hypothetical protein YggL SW:YGGL_ECOLI (P38521) (108 aa) fasta scores: E(): 0, 78.7% id in 108 aa, and to Haemophilus influenzae hypothetical protein HI0341 SW:YGGL_HAEIN (P44649) (114 aa) fasta scores: E(): 1.7e-27, 59.3% id in 108 aa | genbank | 16121253 | NP_404566.1 | 108 | 1049192 | 1049518 |