Vibrio parahaemolyticus RIMD 2210633 chromosome I

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184901-185000 (1-100) 185001-185100 (101-200) [185101-185200 (201-300)] 185201-185300 (301-400) 185301-185400 (401-500)
185401-185500 (501-600) 185501-185600 (601-700) 185601-185700 (701-800) 185701-185800 (801-900) 185801-185900 (901-1000)
185901-186000 (1001-1100) 186001-186100 (1101-1200) 186101-186200 (1201-1300) 186201-186300 (1301-1400) 186301-186400 (1401-1500)
186401-186500 (1501-1600) 186501-186600 (1601-1700) 186601-186700 (1701-1800) 186701-186800 (1801-1900) 186801-186900 (1901-2000)
186901-187000 (2001-2100) 187001-187100 (2101-2200) 187101-187200 (2201-2300) 187201-187300 (2301-2400) 187301-187400 (2401-2500)
187401-187500 (2501-2600) 187501-187600 (2601-2700) 187601-187700 (2701-2800) 187701-187800 (2801-2900) 187801-187900 (2901-3000)
187901-187980 (3001-3080)


Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185101 hypothetical VP0201 putative acetyltransferase
similar to GB:AAD56747.1 (AF125164) percent identity 28 in 198 aa
genbank 28896975 NP_796580.1 198 211945 212541
185102 hypothetical VP0202 putative sugar-phosphate nucleotide transferase
similar to EMB:CAB73756.1 (AL139078) percent identity 38 in 335 aa
genbank 28896976 NP_796581.1 351 212564 213619
185103 hypothetical VP0203 putative CMP-N-acetlyneuraminic acid synthetase
similar to GB:AAK29664.1 (AF349539) percent identity 34 in 236 aa
genbank 28896977 NP_796582.1 239 213621 214340
185104 hypothetical VP0204 putative 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related protein
similar to GB:AAB85373.1 (AE000863) percent identity 22 in 304 aa
genbank 28896978 NP_796583.1 343 214325 215356
185105 hypothetical VP0205 glutamate-1-semialdehyde 2,1-aminomutase
catalyzes the formation of 5-aminovulinate from (S)-4-amino-5-oxopentanoate
genbank 28896979 NP_796584.1 439 215353 216672
185106 hypothetical VP0206 putative amidohydrolase
similar to GB:AAK79631.1 (AE007676) percent identity 34 in 263 aa
genbank 28896980 NP_796585.1 271 216672 217487
185107 hypothetical VP0207 flagellin modification protein A
similar to GB:AAB48075.1 (U25992) percent identity 37 in 258 aa
genbank 28896981 NP_796586.1 253 217516 218277
185108 hypothetical VP0208 putative integral membrane protein
unknown
genbank 28896982 NP_796587.1 368 218339 219445
185109 hypothetical VP0209 putative citrate synthase
unknown
genbank 28896983 NP_796588.1 342 219479 220507
185110 hypothetical VP0210 putative Lex2B
similar to GB:AAL77351.1 (AF444792) percent identity 32 in 230 aa
genbank 28896984 NP_796589.1 239 220504 221223
185111 hypothetical VP0211 3-deoxy-D-manno-octulosonic-acid transferase
Catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid
genbank 28896985 NP_796590.1 423 221223 222494
185112 hypothetical VP0212 ADP-heptose-LPS heptosyltransferase II
similar to GB:AAF93412.1 (AE004112) percent identity 64 in 343 aa
genbank 28896986 NP_796591.1 352 222488 223546
185113 hypothetical VP0213 lipid A biosynthesis lauroyl acyltransferase
Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
genbank 28896987 NP_796592.1 329 223543 224532
185114 hypothetical VP0214 ADP glyceromanno-heptose 6-epimerase GmhD
similar to DBJ:BAA36488.1 (AB012957) percent identity 86 in 312 aa
genbank 28896988 NP_796593.1 313 224667 225608
185115 hypothetical VP0215 putative OtnG protein
similar to GB:AAB02639.1 (U47542) percent identity 48 in 734 aa
genbank 28896989 NP_796594.1 732 225749 227947
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185116 hypothetical VP0216 hypothetical protein
unknown
genbank 28896990 NP_796595.1 253 227950 228711
185117 hypothetical VP0217 putative regulator
similar to GB:AAC74071.1 (AE000200) percent identity 31 in 219 aa
genbank 28896991 NP_796596.1 225 228708 229385
185118 hypothetical VP0218 hypothetical protein
unknown
genbank 28896992 NP_796597.1 72 229457 229675
185119 hypothetical VP0219 hypothetical protein
similar to EMB:CAA62139.1 (X90547) percent identity 47 in 161 aa
genbank 28896993 NP_796598.1 188 230277 230843
185120 hypothetical VP0220 OtnA protein
similar to EMB:CAA62140.1 (X90547) percent identity 69 in 913 aa
genbank 28896994 NP_796599.1 889 230912 233581
185121 hypothetical VP0221 OtnB protein
similar to GB:AAA77030.1 (U24571) percent identity 54 in 322 aa
genbank 28896995 NP_796600.1 330 233872 234864
185122 hypothetical VP0222 dTDP-D-glucose 4,6-dehydratase
similar to GB:AAL27322.1 (AF402313) percent identity 78 in 350 aa
genbank 28896996 NP_796601.1 362 235048 236136
185123 hypothetical VP0223 D-glucose-1-phosphate thymidylyltransferase
similar to DBJ:BAA94403.1 (AB041266) percent identity 76 in 290 aa
genbank 28896997 NP_796602.1 291 236136 237011
185124 hypothetical VP0224 putative dTDP-4-dehydrorhamnose reductase
similar to DBJ:BAB60062.1 (AP000994) percent identity 29 in 275 aa
genbank 28896998 NP_796603.1 290 237008 237880
185125 hypothetical VP0225 putative capsular polysaccharide biosynthesis protein CapF
similar to GB:AAA64645.1 (U10927) percent identity 22 in 401 aa
genbank 28896999 NP_796604.1 392 237864 239042
185126 hypothetical VP0226 putative rhamnosyl transferase
similar to GB:AAK80268.1 (AE007732) percent identity 23 in 256 aa
genbank 28897000 NP_796605.1 273 239039 239860
185127 hypothetical VP0227 hypothetical protein
unknown
genbank 28897001 NP_796606.1 385 239857 241014
185128 hypothetical VP0228 putative integral membrane protein
similar to GB:AAB91524.1 (AE001160) percent identity 22 in 314 aa
genbank 28897002 NP_796607.1 409 241016 242245
185129 hypothetical VP0229 dTDP-4-dehydrorhamnose 3,5-epimerase
similar to EMB:CAC44167.1 (AJ313422) percent identity 58 in 174 aa
genbank 28897003 NP_796608.1 187 242226 242789
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185130 hypothetical VP0230 putative glycosyltransferase
similar to EMB:CAB57204.1 (AJ243431) percent identity 35 in 406 aa
genbank 28897004 NP_796609.1 412 242793 244031
185131 hypothetical VP0231 putative UDP-galactose phosphate transferase
similar to GB:AAK56074.1 (AF320320) percent identity 65 in 199 aa
genbank 28897005 NP_796610.1 200 244012 244614
185132 hypothetical VP0232 hypothetical protein
similar to GB:AAK56074.1 (AF320320) percent identity 52 in 320 aa
genbank 28897006 NP_796611.1 321 244604 245569
185133 hypothetical VP0233 hypothetical protein
similar to GB:AAK56075.1 (AF320320) percent identity 42 in 217 aa
genbank 28897007 NP_796612.1 220 245556 246218
185134 hypothetical VP0234 pilin glycosylation protein
similar to EMB:CAB83928.1 (AL162753) percent identity 72 in 391 aa
genbank 28897008 NP_796613.1 391 246212 247387
185135 hypothetical VP0235 putative epimerase/dehydratase
similar to DBJ:BAA33644.1 (AB012957) percent identity 70 in 634 aa
genbank 28897009 NP_796614.1 649 247555 249504
185136 hypothetical VP0236 nucleotide sugar dehydrogenase
similar to GB:AAC46249.1 (U47057) percent identity 87 in 388 aa
genbank 28897010 NP_796615.1 388 249662 250828
185137 hypothetical VP0237 UTP-glucose-1-phosphate uridylyltransferase
similar to GB:AAF93568.1 (AE004128) percent identity 86 in 288 aa
genbank 28897011 NP_796616.1 292 250898 251776
185138 hypothetical VP0238 hypothetical protein
similar to DBJ:BAA33615.1 (AB012956) percent identity 63 in 451 aa
genbank 28897012 NP_796617.1 449 251930 253279
185139 hypothetical VP0239 triosephosphate isomerase
In the reaction catalyzed by triosephosphate isomerase, the three carbon ketone sugar dihydroxyacetone phosphate is rearranged (i.e. isomerized) to the three carbon aldehyde sugar, glyceraldehyde-3-phosphate. Under intracellular conditions, the reaction is
genbank 28897013 NP_796618.1 256 253572 254342
185140 hypothetical VP0240 putative 5-carboxymethyl-2-hydroxymuconate delta isomerase
similar to GB:AAF95810.1 (AE004332) percent identity 73 in 115 aa
genbank 28897014 NP_796619.1 115 254613 254960
185141 hypothetical VP0241 hypothetical protein
similar to GB:AAF95809.1 (AE004332) percent identity 54 in 141 aa
genbank 28897015 NP_796620.1 140 255059 255481
185142 hypothetical VP0242 hypothetical protein
similar to GB:AAF95808.1 (AE004332) percent identity 57 in 97 aa
genbank 28897016 NP_796621.1 112 255522 255860
185143 hypothetical VP0243 hypothetical protein
similar to GB:AAF95807.1 (AE004332) percent identity 71 in 204 aa
genbank 28897017 NP_796622.1 204 255983 256597
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185144 glpX hypothetical VP0244 fructose 1,6-bisphosphatase II
distinct fructose 1,6-bisphosphatae; dimeric enzyme; binds manganese
genbank 28897018 NP_796623.1 335 256743 257750
185145 hypothetical VP0245 hypothetical protein
unknown
genbank 28897019 NP_796624.1 55 257852 258019
185146 hypothetical VP0246 hypothetical protein
similar to GB:AAF95827.1 (AE004334) percent identity 77 in 80 aa
genbank 28897020 NP_796625.1 80 258096 258338
185147 hypothetical VP0247 ribonuclease activity regulator protein RraA
regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
genbank 28897021 NP_796626.1 170 258443 258955
185148 hypothetical VP0248 1,4-dihydroxy-2-naphthoate octaprenyltransferase,
catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate
genbank 28897022 NP_796627.1 305 259032 259949
185149 hypothetical VP0249 ATP-dependent protease ATP-binding subunit
heat shock protein involved in degradation of misfolded proteins
genbank 28897023 NP_796628.1 443 260134 261465
185150 hypothetical VP0250 ATP-dependent protease peptidase subunit
heat shock protein involved indegradation of misfolded proteins
genbank 28897024 NP_796629.1 183 261489 262040
185151 hypothetical VP0251 putative cell division protein FtsN
similar to GB:AAF95817.1 (AE004333) percent identity 72 in 181 aa
genbank 28897025 NP_796630.1 181 262205 262750
185152 hypothetical VP0252 transcriptional repressor, LacI family
similar to GB:AAF95818.1 (AE004333) percent identity 90 in 334 aa
genbank 28897026 NP_796631.1 335 262927 263934
185153 hypothetical VP0253 primosome assembly protein PriA
binding of PriA to forked DNA starts the assembly of the primosome, also posseses 3'-5' helicase activity
genbank 28897027 NP_796632.1 734 264267 266471
185154 hypothetical VP0254 hypothetical protein
unknown
genbank 28897028 NP_796633.1 48 266581 266727
185155 hypothetical VP0255 50S ribosomal protein L31
RpmE; RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; RpmE is found in exponentially growing Bacilli while YtiA was found after exponentia
genbank 28897029 NP_796634.1 73 266766 266987
185156 hypothetical VP0256 30S ribosomal protein S10
Involved in the binding of tRNA to the ribosomes
genbank 28897030 NP_796635.1 103 267445 267756
185157 hypothetical VP0257 50S ribosomal protein L3
Binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit
genbank 28897031 NP_796636.1 209 267771 268400
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185158 hypothetical VP0258 50S ribosomal protein L4
This subunit is important during the early stages of 50S assembly, initially binding near the 5' end of the 23S rRNA
genbank 28897032 NP_796637.1 200 268418 269020
185159 hypothetical VP0259 50S ribosomal protein L23
Binds signal recoginition particle and trigger factor at the peptide exit area on the 50S ribosome
genbank 28897033 NP_796638.1 100 269017 269319
185160 hypothetical VP0260 50S ribosomal protein L2
one of the primary rRNA binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
genbank 28897034 NP_796639.1 274 269335 270159
185161 rpsS hypothetical VP0261 30S ribosomal protein S19
protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
genbank 28897035 NP_796640.1 92 270181 270459
185162 hypothetical VP0262 50S ribosomal protein L22
Binds specifically to 23S rRNA during the early stages of 50S assembly. It makes multiple contacts with different domains of te 23S rRNA in the assembled 50S subunit and ribosome
genbank 28897036 NP_796641.1 110 270470 270802
185163 rpsC hypothetical VP0263 30S ribosomal protein S3
forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
genbank 28897037 NP_796642.1 232 270821 271519
185164 hypothetical VP0264 50S ribosomal protein L16
located in the peptidyl transferase center and may be involved in peptidyl transferase activity
genbank 28897038 NP_796643.1 136 271531 271941
185165 rpmC hypothetical VP0265 50S ribosomal protein L29
One of the stabilizing components for the large ribosomal subunit
genbank 28897039 NP_796644.1 63 271941 272132
185166 hypothetical VP0266 ribosomal protein S17
similar to GB:AAF95728.1 (AE004326) percent identity 90 in 84 aa
genbank 28897040 NP_796645.1 84 272132 272386
185167 hypothetical VP0267 50S ribosomal protein L14
binds to the 23S rRNA
genbank 28897041 NP_796646.1 123 272549 272920
185168 hypothetical VP0268 50S ribosomal protein L24
One of two assembly inititator proteins, it binds directly to the 5' end of the 23S rRNA, where it nucleates assembly of the 50S subunit
genbank 28897042 NP_796647.1 105 272934 273251
185169 hypothetical VP0269 50S ribosomal protein L5
Mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
genbank 28897043 NP_796648.1 179 273275 273814
185170 hypothetical VP0270 30S ribosomal protein S14
located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit
genbank 28897044 NP_796649.1 101 273832 274137
185171 hypothetical VP0271 30S ribosomal protein S8
Binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
genbank 28897045 NP_796650.1 130 274167 274559
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185172 hypothetical VP0272 50S ribosomal protein L6
similar to GB:AAF95722.1 (AE004326) percent identity 90 in 177 aa
genbank 28897046 NP_796651.1 177 274572 275105
185173 hypothetical VP0273 50S ribosomal protein L18
binds 5S rRNA
genbank 28897047 NP_796652.1 117 275115 275468
185174 rpsE hypothetical VP0274 30S ribosomal protein S5
located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy
genbank 28897048 NP_796653.1 167 275483 275986
185175 hypothetical VP0275 50S ribosomal protein L30
Non-essential, may be involved in procession of translation
genbank 28897049 NP_796654.1 58 275994 276170
185176 hypothetical VP0276 50S ribosomal protein L15
associates with 23S ribosomal RNA and is involved in 50S ribosome assembly
genbank 28897050 NP_796655.1 144 276176 276610
185177 hypothetical VP0277 preprotein translocase SecY
with SecE and SecG forms a protein-conduction channel in the inner membrane
genbank 28897051 NP_796656.1 444 276631 277965
185178 hypothetical VP0278 50S ribosomal protein L36
Ribosomal protein L36 is the smallest protein from the large subunit of the prokaryotic ribosome
genbank 28897052 NP_796657.1 37 278004 278117
185179 hypothetical VP0279 30S ribosomal protein S13
Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA
genbank 28897053 NP_796658.1 118 278267 278623
185180 hypothetical VP0280 30S ribosomal protein S11
located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome
genbank 28897054 NP_796659.1 129 278642 279031
185181 hypothetical VP0281 30S ribosomal protein S4
Binds directly to 16S rRNA where it nucleates assembly of the 30S subunit
genbank 28897055 NP_796660.1 206 279059 279679
185182 hypothetical VP0282 DNA-directed RNA polymerase alpha subunit
Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
genbank 28897056 NP_796661.1 330 279704 280696
185183 hypothetical VP0283 50S ribosomal protein L17
is a component of the macrolide binding site in the peptidyl transferase center
genbank 28897057 NP_796662.1 126 280723 281103
185184 hypothetical VP0284 hypothetical protein
similar to GB:AAF95710.1 (AE004325) percent identity 41 in 152 aa
genbank 28897058 NP_796663.1 159 281243 281722
185185 hypothetical VP0285 peptidyl-prolyl cis-trans isomerase, FKBP-type
similar to GB:AAF95709.1 (AE004325) percent identity 85 in 206 aa
genbank 28897059 NP_796664.1 206 281860 282480
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185186 hypothetical VP0286 hypothetical protein
similar to GB:AAF95708.1 (AE004325) percent identity 52 in 199 aa
genbank 28897060 NP_796665.1 199 282713 283312
185187 hypothetical VP0287 ElaA protein
similar to GB:AAF95706.1 (AE004325) percent identity 65 in 148 aa
genbank 28897061 NP_796666.1 153 283379 283840
185188 hypothetical VP0288 ATP-dependent RNA helicase DbpA
similar to GB:AAF95705.1 (AE004325) percent identity 75 in 460 aa
genbank 28897062 NP_796667.1 459 283987 285366
185189 hypothetical VP0289 hypothetical protein
similar to GB:AAF95704.1 (AE004325) percent identity 60 in 188 aa
genbank 28897063 NP_796668.1 190 285425 285997
185190 cpdB hypothetical VP0290 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein
periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate
genbank 28897064 NP_796669.1 651 286106 288061
185191 hypothetical VP0291 uroporphyrin-III C-methyltransferase
catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1
genbank 28897065 NP_796670.1 304 288295 289209
185192 hypothetical VP0292 sulfate adenylyltransferase subunit 2
with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
genbank 28897066 NP_796671.1 302 289269 290177
185193 cysN hypothetical VP0293 sulfate adenylyltransferase subunit 1
may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; pa
genbank 28897067 NP_796672.1 476 290196 291626
185194 hypothetical VP0294 hypothetical protein
unknown
genbank 28897068 NP_796673.1 36 291691 291801
185195 hypothetical VP0295 putative sodium/sulfate symporter
similar to DBJ:BAB07103.1 (AP001518) percent identity 31 in 578 aa
genbank 28897069 NP_796674.1 574 291858 293582
185196 hypothetical VP0296 adenylylsulfate kinase
converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis
genbank 28897070 NP_796675.1 205 293607 294224
185197 hypothetical VP0297 hypothetical protein
similar to GB:AAF95698.1 (AE004324) percent identity 74 in 195 aa
genbank 28897071 NP_796676.1 194 294315 294899
185198 hypothetical VP0298 hypothetical protein
unknown
genbank 28897072 NP_796677.1 80 295068 295310
185199 hypothetical VP0299 hypothetical protein
similar to GB:AAF95696.1 (AE004324) percent identity 66 in 168 aa
genbank 28897073 NP_796678.1 164 295538 296032
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185200 hypothetical VP0300 hypothetical protein
similar to GB:AAF95695.1 (AE004324) percent identity 82 in 419 aa
genbank 28897074 NP_796679.1 419 296035 297294


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