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Blast 2 Sequences results

PubMed Entrez BLAST OMIM Taxonomy Structure

BLAST 2 SEQUENCES RESULTS VERSION BLASTP 2.2.20 [Feb-08-2009]

Matrix gap open: gap extension:
x_dropoff: expect: wordsize: Filter View option    
Masking character option     Masking color option    
Show CDS translation

Sequence 1: gi|50355692|lamin A isoform A [Mus musculus]
Length = 665 (1 .. 665)

Sequence 2: gi|125963|RecName: Full=Lamin-A >gi|156119433|ref|NP_001095210.1| lamin A/C [Xenopus laevis] >gi|64878|emb|CAA29652.1| unnamed protein product [Xenopus laevis] >gi|255254|gb|AAB23219.1| lamin A, XlA [Xenopus laevis, Peptide, 665 aa]
Length = 665 (1 .. 665)





2 1

NOTE:Bitscore and expect value are calculated based on the size of the nr database.





 Score =  926 bits (2394),  Expect = 0.0
 Identities = 484/675 (71%), Positives = 573/675 (84%), Gaps = 20/675 (2%)

Query  1    METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR  60
            METP Q+RATRS    + TPLSPTRITRLQEKEDLQ LNDRLAVYID+VRSLE ENA LR
Sbjct  1    METPGQKRATRS----THTPLSPTRITRLQEKEDLQGLNDRLAVYIDKVRSLELENARLR  56

Query  61   LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN  120
            LRITESE+V+SREV+GIK+AYE EL DARKTLDSVAKERARLQLELSK+REE KELKARN
Sbjct  57   LRITESEDVISREVTGIKSAYETELADARKTLDSVAKERARLQLELSKIREEHKELKARN  116

Query  121  TKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAK  180
             KKE DLL AQARLKDLEALLNSK+AAL+TAL EKR LE E+ +L+  +AKLEA+L + K
Sbjct  117  AKKESDLLTAQARLKDLEALLNSKDAALTTALGEKRNLENEIRELKAHIAKLEASLADTK  176

Query  181  KQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR  240
            KQLQDEMLRRVD ENR QTLKEEL+FQK+IY+EE+RETKRRHETRLVE+DNG+QREFES+
Sbjct  177  KQLQDEMLRRVDTENRNQTLKEELEFQKSIYNEEMRETKRRHETRLVEVDNGRQREFESK  236

Query  241  LADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID  300
            LADAL ELRAQHE Q+  YK+EL KTY+AKL+NA+QSAERNS+LVG A EE+QQSRIRID
Sbjct  237  LADALHELRAQHEGQIGLYKEELGKTYNAKLENAKQSAERNSSLVGEAQEEIQQSRIRID  296

Query  301  SLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ  360
            SLSAQLSQLQKQLAA+EAKLRDLED+ ARERD+SRRLLA+K+REMAEMRARMQQQLDEYQ
Sbjct  297  SLSAQLSQLQKQLAAREAKLRDLEDAYARERDSSRRLLADKDREMAEMRARMQQQLDEYQ  356

Query  361  ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQSQGGGSVTKKRK  420
            ELLDIKLALDMEI+AYRKLLEGEEERLRLSPSP +Q+   R  +  S +    S +K+R+
Sbjct  357  ELLDIKLALDMEINAYRKLLEGEEERLRLSPSPNTQKRSARTIASHSGAHISSSASKRRR  416

Query  421  LESSESR-SSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDDPLM  479
            LE  ESR SSF+QHART+G+V+VEEVD EGK+VRLRNKSNEDQS+GNWQI+RQ GD+  +
Sbjct  417  LEEGESRSSSFTQHARTTGKVSVEEVDPEGKYVRLRNKSNEDQSLGNWQIKRQIGDETPI  476

Query  480  TYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVA  539
             Y+FPP+ TLKAGQ VTIWASGAGAT+SPP+DLVWKAQ++WG G S+RTAL+ S+ EEVA
Sbjct  477  VYKFPPRLTLKAGQTVTIWASGAGATNSPPSDLVWKAQSSWGTGDSIRTALLTSSNEEVA  536

Query  540  MRKLVRSLTMVEDNEDDDEDGEELLHHHRGSH-----CSGSGDPAEYNLRSRTVLCGTCG  594
            MRKLVR++ +   N++DDED +++ HHH   H      + SGDP EYNLRSRT++C +CG
Sbjct  537  MRKLVRTVVI---NDEDDEDNDDMEHHHHHHHHHHDGQNSSGDPGEYNLRSRTIVCTSCG  593

Query  595  QPADK---AAGGAGAQVGGSVSSGSYASSVTVTRSFRSVGGSGGGS-FGDNLVTRSYLLG  650
            +PA+K   A+ G+G   G   SSGS +SSVT+TR++RS GG+ GGS  G++ VTR++++G
Sbjct  594  RPAEKSVLASQGSGLVTG---SSGSSSSSVTLTRTYRSTGGTSGGSGLGESPVTRNFIVG  650

Query  651  NSSPRSQSSQNCSIM  665
            N      + QNCSIM
Sbjct  651  NGQRAQVAPQNCSIM  665


CPU time:     0.08 user secs.	    0.07 sys. secs	    0.15 total secs.