proteins
| 48 proteins |
R | COG1545 | Predicted nucleic-acid-binding protein containing a Zn-ribbon | Help | |
|---|---|---|---|---|---|
| 3 from | query genome Thermoplasma acidophilum (Thermoplasmatales | Thermoplasmata) | ||||
| Ta0031 Ta0352 Ta1457 | ||||
135 letters 0
0 727 = |||Ta1457 (135) = -2
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ta1457
(135 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
Ta1457 284 3e-77
TVN0132 255 2e-68
MK1377 155 2e-38
MJ1552 155 2e-38
MTH1398 133 9e-32
MA4043 132 2e-31
PH0675 122 3e-28
PAB0908 119 2e-27
AF2417 119 2e-27
PAE2184 105 3e-23
APE1871 98 5e-21
AF0284 78 4e-15
AF1292 69 3e-12
AF0135 62 4e-10
APE2390 60 9e-10
AF0965 57 1e-08
AF0437 56 2e-08
AF0966 54 7e-08
AF0203 53 2e-07
AF0019 51 7e-07
AF0132 50 1e-06
AF0033_2 49 4e-06
CC1431_2 37 0.014
mlr3277_1 33 0.21
DRA0325 27 8.8
# >Ta1457
# Length = 135
#
# Score = 284 bits (727), Expect = 3e-77
# Identities = 135/135 (100%), Positives = 135/135 (100%)
#
# Query: 1 MIMGQLSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVI 60
# MIMGQLSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVI
# Sbjct: 1 MIMGQLSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVI 60
#
# Query: 61 ESFTIVHEAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGED 120
# ESFTIVHEAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGED
# Sbjct: 61 ESFTIVHEAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGED 120
#
# Query: 121 GDTGVIVYGYKFALD 135
# GDTGVIVYGYKFALD
# Sbjct: 121 GDTGVIVYGYKFALD 135
#
#
# >TVN0132
# Length = 133
#
# Score = 255 bits (652), Expect = 2e-68
# Identities = 115/133 (86%), Positives = 128/133 (95%)
#
# Query: 3 MGQLSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIES 62
# MGQLSRFWRESEHRYRL+G++C NCG VYFPPREVCPTCHR+SIGKMKD+ELSG+GVIES
# Sbjct: 1 MGQLSRFWRESEHRYRLLGSKCGNCGTVYFPPREVCPTCHRDSIGKMKDIELSGDGVIES 60
#
# Query: 63 FTIVHEAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDGD 122
# FT+VHEAPPRFSRQ+PY+LALIKTEEGPM+TGQIVD DP EVEIGK+VHAVFRRMGEDG+
# Sbjct: 61 FTVVHEAPPRFSRQRPYILALIKTEEGPMLTGQIVDADPDEVEIGKKVHAVFRRMGEDGE 120
#
# Query: 123 TGVIVYGYKFALD 135
# +GVIVYGYKF LD
# Sbjct: 121 SGVIVYGYKFVLD 133
#
#
# >MK1377
# Length = 134
#
# Score = 155 bits (393), Expect = 2e-38
# Identities = 66/130 (50%), Positives = 96/130 (73%), Gaps = 2/130 (1%)
#
# Query: 3 MGQLSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIES 62
# MG + RFWR ++RYRL+GTRC+NCG V+FPPR VCP C + G+M++++LSG G + +
# Sbjct: 1 MGGVPRFWRSIDNRYRLVGTRCKNCGEVFFPPRVVCPNCRSD--GEMEEVQLSGRGEVYT 58
#
# Query: 63 FTIVHEAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDGD 122
# +++V P F + PYV+A++K EEGP++T IVDC+P E+++G V AVFRR+ EDG+
# Sbjct: 59 YSVVRVPPEGFEDKAPYVVAIVKLEEGPLVTAMIVDCEPGEIDVGTPVEAVFRRISEDGE 118
#
# Query: 123 TGVIVYGYKF 132
# GVI Y +F
# Sbjct: 119 DGVIYYSLEF 128
#
#
# >MJ1552
# Length = 141
#
# Score = 155 bits (393), Expect = 2e-38
# Identities = 70/125 (56%), Positives = 94/125 (75%), Gaps = 2/125 (1%)
#
# Query: 8 RFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTIVH 67
# R WR + RY L+G RC+NCG VYFP RE+CP C R++ + ++++LSG+G + ++++VH
# Sbjct: 14 RSWRHIKERYCLIGVRCKNCGTVYFPSREICPKCRRKT--EFEEIKLSGKGKVYTYSVVH 71
#
# Query: 68 EAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDGDTGVIV 127
# AP F +Q PYV+A+I+ EEG ITGQIVDC P +V IG +V AVFRR+ EDGD GVI
# Sbjct: 72 VAPKDFEKQAPYVIAIIELEEGARITGQIVDCKPEDVYIGMQVEAVFRRIKEDGDDGVIT 131
#
# Query: 128 YGYKF 132
# YGYKF
# Sbjct: 132 YGYKF 136
#
#
# >MTH1398
# Length = 133
#
# Score = 133 bits (335), Expect = 9e-32
# Identities = 59/131 (45%), Positives = 87/131 (66%), Gaps = 2/131 (1%)
#
# Query: 2 IMGQLSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIE 61
# +M + R WR RY L G++C CG V+FP R +CP C R+ GK+++L+ SG+G I
# Sbjct: 1 MMTETVRTWRHIPQRYNLTGSKCLQCGNVFFPSRIICPECRRK--GKLEELKFSGKGRIH 58
#
# Query: 62 SFTIVHEAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDG 121
# S+++++ F PYV+A+++ EEG +T QIVDCDP +EIG V VFR++ E+G
# Sbjct: 59 SYSVINTPTDEFKDIAPYVVAIVELEEGARVTSQIVDCDPDSIEIGDEVEMVFRKVREEG 118
#
# Query: 122 DTGVIVYGYKF 132
# + GVI YG+KF
# Sbjct: 119 EDGVISYGFKF 129
#
#
# >MA4043
# Length = 132
#
# Score = 132 bits (332), Expect = 2e-31
# Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 3/130 (2%)
#
# Query: 3 MGQLSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIES 62
# M + RFWR RY L GTRC+ CG ++PPR C C R G+++ + G G I +
# Sbjct: 1 MSSVPRFWRNLGSRYNLEGTRCDECGNYFYPPRNFCVNCRRS--GQIEPYKFKGTGEIVT 58
#
# Query: 63 FTIVHEAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDGD 122
# +T++H A F Q PY LA+IK +EGP +T Q+V DP +++IG RV +VFR++GEDG+
# Sbjct: 59 YTLIHTAAEGFEGQAPYTLAIIKLDEGPRLTSQVVG-DPEKIQIGTRVRSVFRKLGEDGE 117
#
# Query: 123 TGVIVYGYKF 132
# G+I YG KF
# Sbjct: 118 RGMIYYGTKF 127
#
#
# >PH0675
# Length = 134
#
# Score = 122 bits (305), Expect = 3e-28
# Identities = 57/128 (44%), Positives = 84/128 (65%), Gaps = 4/128 (3%)
#
# Query: 5 QLSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFT 64
# Q+SR+WR + +YRL+G +CEN G V+FP R VCP C ++ +D E SG+G + ++T
# Sbjct: 6 QVSRYWRHFKEKYRLIGGKCEN-GHVFFPKRPVCPICGSRNV---EDFEFSGKGKVITWT 61
#
# Query: 65 IVHEAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDGDTG 124
# IV P F KPY +ALI+ EEGP++ Q+ D +P E++ G V V R++ E + G
# Sbjct: 62 IVRNPPSGFEYYKPYPIALIQLEEGPIVLAQLTDVEPDEIKEGMEVEMVTRKIVEFNEDG 121
#
# Query: 125 VIVYGYKF 132
# +I+YGYKF
# Sbjct: 122 IILYGYKF 129
#
#
# >PAB0908
# Length = 134
#
# Score = 119 bits (298), Expect = 2e-27
# Identities = 56/128 (43%), Positives = 81/128 (62%), Gaps = 4/128 (3%)
#
# Query: 5 QLSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFT 64
# Q+SR+WR +YRL+G +CEN G V+FP R VCP C ++ ++ E SG G + ++T
# Sbjct: 6 QVSRYWRHFREKYRLIGGKCEN-GHVFFPKRPVCPVCGSRNV---EEFEFSGRGKVITWT 61
#
# Query: 65 IVHEAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDGDTG 124
# IV P F KPY +ALI+ EEGP++ Q+ D +P E+ G V V R++ E + G
# Sbjct: 62 IVRNPPSGFEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEEDG 121
#
# Query: 125 VIVYGYKF 132
# +I+YGYKF
# Sbjct: 122 IILYGYKF 129
#
#
# >AF2417
# Length = 122
#
# Score = 119 bits (298), Expect = 2e-27
# Identities = 59/125 (47%), Positives = 79/125 (63%), Gaps = 10/125 (8%)
#
# Query: 8 RFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTIVH 67
# R WR+ +RY + G+ CENCG ++PPR CPTC R GK+ ++ EG + S+T+V
# Sbjct: 4 RSWRKIRYRYDVRGSYCENCGSYHYPPRNFCPTCRRR--GKLVEVLFPDEGKVVSYTVVR 61
#
# Query: 68 EAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDGDTGVIV 127
# E ++PYV+ALI+ E G I Q+ C+P EVEIG RV FRR GEDG+ G+I
# Sbjct: 62 E-------KEPYVVALIELENGARILSQL-SCEPDEVEIGMRVRRAFRRYGEDGEEGIIH 113
#
# Query: 128 YGYKF 132
# YG KF
# Sbjct: 114 YGTKF 118
#
#
# >PAE2184
# Length = 133
#
# Score = 105 bits (262), Expect = 3e-23
# Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
#
# Query: 9 FWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTIVHE 68
# +WR YRL+ RC+ CG VY+PP C RE ++D+EL EG + +T++H+
# Sbjct: 9 YWRNIPQYYRLVAKRCKKCGAVYYPPVVRCRCGSRE----LEDVELPKEGRLLEYTVLHQ 64
#
# Query: 69 APPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDGDTGVIVY 128
# F +QKP +L L++ G + GQIVD P ++ G +V VFRR+ DG G+++Y
# Sbjct: 65 VGSDFLKQKPLILGLVELANGIRVAGQIVDVQPDKLAPGVKVEVVFRRVVVDGKHGLVMY 124
#
# Query: 129 GYKF 132
# GYKF
# Sbjct: 125 GYKF 128
#
#
# >APE1871
# Length = 136
#
# Score = 97.8 bits (242), Expect = 5e-21
# Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
#
# Query: 8 RFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTIVH 67
# R WR RYRL+G RC +CGR ++PP + CP C ++ + EL G +E++T+++
# Sbjct: 11 REWRTRVPRYRLLGGRCSDCGRSFYPPAKACPYCGSRNVA---ETELPRVGRLEAYTVLY 67
#
# Query: 68 EAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDGDTGVIV 127
# + P V+ L+ +++ + DP +E G +V AVFRR+ EDGD GVIV
# Sbjct: 68 SVESGARDRSPVVIGLVDLGVAKVVSEIVDVSDPESLERGVQVEAVFRRIYEDGDEGVIV 127
#
# Query: 128 YGYKF 132
# YG KF
# Sbjct: 128 YGVKF 132
#
#
# >AF0284
# Length = 165
#
# Score = 78.2 bits (191), Expect = 4e-15
# Identities = 37/93 (39%), Positives = 57/93 (60%), Gaps = 4/93 (4%)
#
# Query: 18 RLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTIVHEAPPRFSRQK 77
# +L+GT+C+ CGR++FPP++ CP+C I + +EL EG +E+ T+V PP FS
# Sbjct: 58 KLLGTKCKKCGRLFFPPQKDCPSCFDSDI---EWVELKNEGTLETMTVVFVRPPSFSAYD 114
#
# Query: 78 PYVLALIKTEEGPMITGQIVDCDPSEVEIGKRV 110
# PY +A+ K ++GP I DP + + G RV
# Sbjct: 115 PYPVAIAKLDDGPRILAWYKG-DPQQAKPGMRV 146
#
#
# >AF1292
# Length = 136
#
# Score = 68.6 bits (166), Expect = 3e-12
# Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 10/99 (10%)
#
# Query: 18 RLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTIVHEAPPRFSRQK 77
# +++G +C +CG PP+ C C ++ + +ELSG+GVI +FT + AP ++ +
# Sbjct: 14 KVIGQKCGDCGSYTCPPKATCDNCGSRNL---EAVELSGKGVIRTFTTTYVAPSGYTNEA 70
#
# Query: 78 PYVLALIKTEEGPMITGQIVDCDPSEVE------IGKRV 110
# PY +A+++ +EGP I G+I D E+E IG RV
# Sbjct: 71 PYTVAMVELDEGPWIVGRI-DLPNEEIEKFGQDLIGARV 108
#
#
# >AF0135
# Length = 148
#
# Score = 61.6 bits (148), Expect = 4e-10
# Identities = 41/125 (32%), Positives = 64/125 (50%), Gaps = 9/125 (7%)
#
# Query: 6 LSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTI 65
# + RF+R E + ++M +CE C PPR++CP C+ +G+ +ELSG GV+ESFT
# Sbjct: 23 MERFYRSFEEK-KIMAAKCEKCSYTVVPPRQICPQCY-SKLGESCLVELSGRGVVESFTE 80
#
# Query: 66 VH----EAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDG 121
# V+ +KP VLA IK + V+ D V++G +V V+ E
# Sbjct: 81 VNFKLDGKGGYIWLEKPEVLAAIKLDGASSTIFARVEGD---VKLGSKVEPVWAEKTEGK 137
#
# Query: 122 DTGVI 126
# + +I
# Sbjct: 138 PSDLI 142
#
#
# >APE2390
# Length = 157
#
# Score = 60.5 bits (145), Expect = 9e-10
# Identities = 37/98 (37%), Positives = 51/98 (51%), Gaps = 7/98 (7%)
#
# Query: 18 RLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTIVHEAPPRFSRQK 77
# R++GT+C + VY PP CP R + E+ G IES+TIV+E+ +K
# Sbjct: 46 RIVGTKCGDT--VYVPPTTFCPDMSRGEVA-----EVLGPWYIESYTIVYESLDGKPLEK 98
#
# Query: 78 PYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFR 115
# P V+A+I E+ VD DP EV IG V VF+
# Sbjct: 99 PVVIAVIAPEDAEGALVHYVDADPDEVYIGMPVEPVFK 136
#
#
# >AF0965
# Length = 154
#
# Score = 56.6 bits (135), Expect = 1e-08
# Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
#
# Query: 9 FWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTIVHE 68
# F+++ + + + +C+ CG+VYFPPR C + + +E+SGEG + +FT+
# Sbjct: 33 FFKKLKDEEKFIAAKCKKCGKVYFPPRIYC----EKDFSDTEFVEVSGEGCVRAFTVARL 88
#
# Query: 69 APPRFSRQKPYVLALIKTE--EGPMITGQIVDCDPSEVEIGKRVHAVFRRMGE-DGDTGV 125
# +KP + A+I + +G +I + + +P +VE+G +V V + E +G
# Sbjct: 89 DAYENPLEKPEIYAVIDIDGTDGCLI-HLLGEVEPEQVEVGMKVKPVLKPKEEREGKITD 147
#
# Query: 126 IVY 128
# I+Y
# Sbjct: 148 ILY 150
#
#
# >AF0437
# Length = 131
#
# Score = 56.2 bits (134), Expect = 2e-08
# Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 14/113 (12%)
#
# Query: 3 MGQLSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIES 62
# + + R+W+ E ++ T C++CG+ + PPR C C G+++ +E++GEGV+E+
# Sbjct: 16 VAKTERYWKGLEEG-KVFKTVCKSCGKEHHPPRAEC-LCG----GEVEWVEITGEGVVEA 69
#
# Query: 63 FTIVHEAPPRFS-RQKPYVLALIKTEEGPMI-------TGQIVDCDPSEVEIG 107
# FT VH P F ++PY +A+ + E ++ G +V P + E G
# Sbjct: 70 FTTVHTIPAGFEWHREPYTIAIARFGEVRVMGWAKEVRVGDVVRLKPGKDETG 122
#
#
# >AF0966
# Length = 176
#
# Score = 54.3 bits (129), Expect = 7e-08
# Identities = 32/101 (31%), Positives = 53/101 (51%), Gaps = 6/101 (5%)
#
# Query: 18 RLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTIVHEAPPRFSRQK 77
# +++G +C CGRV PPR C C++ G +EL G +E+F+I + P +
# Sbjct: 59 KILGVKCNKCGRVMVPPRMFCELCYKPIDGW---VELKDTGTVETFSISYIDPDARPLPE 115
#
# Query: 78 PYVLALIKTEEGPMITG--QIVD-CDPSEVEIGKRVHAVFR 115
# P ++A+I + G I+D P +V IG +V AV++
# Sbjct: 116 PVIVAVISIDGASPHMGIMHILDEVKPEDVYIGMKVKAVWK 156
#
#
# >AF0203
# Length = 149
#
# Score = 52.8 bits (125), Expect = 2e-07
# Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
#
# Query: 18 RLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTIVHEAPPRFS--R 75
# ++ G RC+ CGRV PPR C CH E+ + +E+S EGV+E+ T+ + +F+
# Sbjct: 31 KIFGVRCDRCGRVLVPPRAFCERCHVET---KEWVEVSDEGVVETLTVTY---MKFTGLP 84
#
# Query: 76 QKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFR 115
# PY + +++ + TG + ++ +++H F+
# Sbjct: 85 DPPYAIGVVRLDGAD--TGMLCFLGGVDLSDWRKIHETFK 122
#
#
# >AF0019
# Length = 160
#
# Score = 50.8 bits (120), Expect = 7e-07
# Identities = 34/120 (28%), Positives = 59/120 (48%), Gaps = 10/120 (8%)
#
# Query: 18 RLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFT-IVHEAPPRFSRQ 76
# +L RC++CGR+++PP+ +C C+ + +E+ G I +F+ ++ P
# Sbjct: 43 KLTMQRCKSCGRIFYPPQAMCKHCNSTD---YEWVEVPKRGKIHAFSALLLGFPMVIEEF 99
#
# Query: 77 KPYVLALIK----TEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDGDTGVIVYGYKF 132
# P+V+A+ + E G I G + D D SE+ IG V ++ GD + Y Y F
# Sbjct: 100 APFVIAVARFGDYPENGVQIVGAMFDVDYSELSIGDEVEWEILKIKGPGDK--VRYWYHF 157
#
#
# >AF0132
# Length = 157
#
# Score = 50.4 bits (119), Expect = 1e-06
# Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 25/130 (19%)
#
# Query: 3 MGQLSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIES 62
# +G L + + R +++G+ C +CGRVY PPRE+C C E+ K +E+S G + +
# Sbjct: 12 VGYLDEYVKSFRER-KIIGSLCASCGRVYVPPREICARCFTETAEK---VEVSQYGEVLA 67
#
# Query: 63 FTIVHEAPPR-----------------FSRQKPYVLALIKTE-EGPMITGQIVDCDPSEV 104
# F + +PP + +LA+++ E + +++ +P +V
# Sbjct: 68 FLV---SPPLEKGKVVIAGIDAVQAGFLKEGEQIILAMVRFEGTSSSLVLPLINTEPEKV 124
#
# Query: 105 EIGKRVHAVF 114
# +G +V AV+
# Sbjct: 125 RVGMKVKAVW 134
#
#
# >AF0033_2
# Length = 147
#
# Score = 48.5 bits (114), Expect = 4e-06
# Identities = 32/119 (26%), Positives = 55/119 (45%), Gaps = 7/119 (5%)
#
# Query: 6 LSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTI 65
# L++FWR+ + R G +C++CG V +P C C + +++ L G I +FTI
# Sbjct: 16 LTKFWRDEKSIIRFYGMKCKSCGTVSYPISRCCIECGAKD--NYEEVRLGERGKIYTFTI 73
#
# Query: 66 VHEAPP---RFSRQKPYVLALIKTEEGPMITGQIVDC--DPSEVEIGKRVHAVFRRMGE 119
# + P P+ +A++ + G + ++ D D S VE V FR + E
# Sbjct: 74 DYLVMPGNYAGDGVHPHFIAVVDLDGGGRVLFELTDTLRDFSGVECDAEVERTFRLLFE 132
#
#
# >CC1431_2
# Length = 128
#
# Score = 36.6 bits (83), Expect = 0.014
# Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
#
# Query: 19 LMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGV-IESFTIVHEAPPRFSRQK 77
# L+G RC G + FP + + ++ + + + I S++ + FS
# Sbjct: 1 LVGGRCRETGVIQFPRTRISVAPNNPAVDTQEPYKFAERRASILSYSADYLT---FSMAP 57
#
# Query: 78 PYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDGDTGVIVYGYKFALD 135
# P ++ E G I I D P +VE G V VFR D G + Y +K D
# Sbjct: 58 PNHYGMVVFEGGGRIMMDITDVSPGDVETGLPVRMVFRIKEVDEKRGFVRYFWKATPD 115
#
#
# >mlr3277_1
# Length = 315
#
# Score = 32.7 bits (73), Expect = 0.21
# Identities = 25/67 (37%), Positives = 31/67 (45%), Gaps = 8/67 (11%)
#
# Query: 24 CENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFTIVHEAPPRFSRQKPYVLAL 83
# C NCG P E CP C G K +E S TIV PP + P +LA
# Sbjct: 50 CANCGYPCAPDFEFCPKCGASVGGAAKAVERPAP--TPSRTIV---PP---SRTPSLLAN 101
#
# Query: 84 IKTEEGP 90
# I++E+GP
# Sbjct: 102 IESEDGP 108
#
#
# >DRA0325
# Length = 654
#
# Score = 27.3 bits (59), Expect = 8.8
# Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 4/63 (6%)
#
# Query: 77 KPYVLALIKTEEGPMITGQIVDCDPSEVEI-GKRVHAVFRRMGEDG---DTGVIVYGYKF 132
# K +LAL+ +EG + G + + VE+ RV R+ DG DTG I Y +
# Sbjct: 237 KSAILALLPNKEGTQLVGALQSGKTARVEVTNLRVLPSVLRISPDGTATDTGPIPYVFNS 296
#
# Query: 133 ALD 135
# L+
# Sbjct: 297 YLE 299
#
#
Database: myva
Posted date: Sep 17, 2002 10:27 AM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.323 0.142 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,064,454
Number of Sequences: 192987
Number of extensions: 619663
Number of successful extensions: 1556
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1468
Number of HSP's gapped (non-prelim): 72
length of query: 135
length of database: 59,019,183
effective HSP length: 98
effective length of query: 37
effective length of database: 40,106,457
effective search space: 1483938909
effective search space used: 1483938909
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
S2: 59 (27.3 bits)