Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 4 |
| Arg | 5 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 2 |
| Leu | 5 |
| Lys | 2 |
| Met | 3 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| SeC(p) | 1 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig178 | 46 | 1070143..1070068 | 0..0 | 86.27 | 68.09 |
| Ala | GGC | Contig178 | 7 | 1607905..1607980 | 0..0 | 84.35 | 65.08 |
| Ala | TGC | Contig178 | 32 | 3968413..3968338 | 0..0 | 95.55 | 78.84 |
| Ala | TGC | Contig178 | 35 | 2981454..2981379 | 0..0 | 95.55 | 78.84 |
| Arg | ACG | Contig178 | 20 | 4640302..4640378 | 0..0 | 80.60 | 59.77 |
| Arg | CCG | Contig178 | 16 | 3181197..3181273 | 0..0 | 89.91 | 68.89 |
| Arg | CCT | Contig178 | 36 | 2725722..2725649 | 0..0 | 72.85 | 45.93 |
| Arg | TCG | Contig178 | 26 | 4025924..4025848 | 0..0 | 92.99 | 77.81 |
| Arg | TCT | Contig178 | 28 | 4025709..4025633 | 0..0 | 90.19 | 71.88 |
| Asn | GTT | Contig178 | 13 | 2960259..2960334 | 0..0 | 84.97 | 49.94 |
| Asp | GTC | Contig178 | 49 | 688786 ..688710 | 0..0 | 86.30 | 62.27 |
| Cys | GCA | Contig178 | 4 | 1357057..1357128 | 0..0 | 65.86 | 37.15 |
| Gln | CTG | Contig178 | 5 | 1429611..1429684 | 0..0 | 55.48 | 30.03 |
| Gln | TTG | Contig178 | 1 | 7872 ..7945 | 0..0 | 63.33 | 35.22 |
| Glu | CTC | Contig178 | 6 | 1429752..1429826 | 0..0 | 77.37 | 55.90 |
| Glu | TTC | Contig178 | 15 | 3074419..3074491 | 0..0 | 45.56 | 12.30 |
| Gly | CCC | Contig178 | 21 | 4945837..4945912 | 0..0 | 96.29 | 76.09 |
| Gly | GCC | Contig178 | 24 | 4295731..4295657 | 0..0 | 93.84 | 72.80 |
| Gly | TCC | Contig178 | 39 | 2531009..2530934 | 0..0 | 98.41 | 78.98 |
| His | GTG | Contig178 | 27 | 4025805..4025730 | 0..0 | 77.83 | 57.13 |
| Ile | GAT | Contig178 | 31 | 3968512..3968435 | 0..0 | 100.49 | 78.38 |
| Ile | GAT | Contig178 | 34 | 2981553..2981476 | 0..0 | 100.49 | 78.38 |
| Leu | CAA | Contig178 | 11 | 2561562..2561645 | 0..0 | 70.09 | 28.58 |
| Leu | CAG | Contig178 | 47 | 719094 ..719011 | 0..0 | 60.82 | 37.34 |
| Leu | GAG | Contig178 | 12 | 2584374..2584455 | 0..0 | 58.41 | 26.09 |
| Leu | TAA | Contig178 | 17 | 3923557..3923642 | 0..0 | 64.88 | 35.68 |
| Leu | TAG | Contig178 | 30 | 4024815..4024734 | 0..0 | 71.95 | 47.88 |
| Lys | CTT | Contig178 | 29 | 4025517..4025445 | 0..0 | 82.33 | 61.84 |
| Lys | TTT | Contig178 | 14 | 3063374..3063446 | 0..0 | 75.29 | 50.11 |
| Met | CAT | Contig178 | 3 | 865621 ..865693 | 0..0 | 68.51 | 44.43 |
| Met | CAT | Contig178 | 43 | 2249979..2249906 | 0..0 | 77.76 | 55.24 |
| Met | CAT | Contig178 | 8 | 1745422..1745498 | 0..0 | 84.22 | 58.15 |
| Phe | GAA | Contig178 | 2 | 21809 ..21881 | 0..0 | 79.18 | 56.39 |
| Pro | CGG | Contig178 | 33 | 3901383..3901310 | 0..0 | 82.37 | 60.98 |
| Pro | GGG | Contig178 | 45 | 1232457..1232384 | 0..0 | 80.00 | 57.41 |
| Pro | TGG | Contig178 | 25 | 4026059..4025986 | 0..0 | 78.89 | 58.51 |
| SeC(p) | TCA | Contig178 | 44 | 2231092..2230998 | 0..0 | 32.91 | 0.00 |
| Ser | CGA | Contig178 | 22 | 4386061..4385974 | 0..0 | 70.08 | 36.88 |
| Ser | GCT | Contig178 | 19 | 4640154..4640243 | 0..0 | 68.53 | 30.63 |
| Ser | GGA | Contig178 | 23 | 4385905..4385816 | 0..0 | 68.29 | 31.50 |
| Ser | TGA | Contig178 | 18 | 4640043..4640132 | 0..0 | 78.47 | 44.26 |
| Thr | CGT | Contig178 | 42 | 2330969..2330894 | 0..0 | 92.66 | 65.45 |
| Thr | GGT | Contig178 | 40 | 2530905..2530830 | 0..0 | 80.44 | 46.70 |
| Thr | TGT | Contig178 | 37 | 2531266..2531191 | 0..0 | 86.64 | 69.91 |
| Trp | CCA | Contig178 | 41 | 2529383..2529308 | 0..0 | 76.72 | 53.04 |
| Tyr | GTA | Contig178 | 38 | 2531134..2531052 | 0..0 | 64.15 | 29.55 |
| Val | CAC | Contig178 | 10 | 2293799..2293870 | 0..0 | 80.83 | 59.10 |
| Val | GAC | Contig178 | 9 | 2138290..2138361 | 0..0 | 76.13 | 47.66 |
| Val | TAC | Contig178 | 48 | 688874 ..688803 | 0..0 | 78.73 | 56.80 |
tRNA Models
Contig178.trna1 (7872-7945) Length: 74 bp
Type: Gln Anticodon: TTG at 33-35 (7904-7906) Score: 63.33
HMM Sc=35.22 Sec struct Sc=28.11
* | * | * | * | * | * | * |
Seq: TGAGGCGTCGTCCAACGGCAGGACTGCGGACTTTGGATCCGCGTATGAAGGTTCGAATCCTTCCGCCTCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig178.trna2 (21809-21881) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (21842-21844) Score: 79.18
HMM Sc=56.39 Sec struct Sc=22.79
* | * | * | * | * | * | * |
Seq: GCCTGGGTAGCTCAGTCGGTAGAGCAGGGGACTGAAAATCCCCGTGtCGGTGGTTCGATTCCGCCCCCAGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna3 (865621-865693) Length: 73 bp
Type: Met Anticodon: CAT at 34-36 (865654-865656) Score: 68.51
HMM Sc=44.43 Sec struct Sc=24.08
* | * | * | * | * | * | * |
Seq: GGGCCCATAGCTCAACGGTcAGAGCGGTCGGCTCATAACCGATTCGaTCCAGGTTCGAATCCTGGTGGGCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna4 (1357057-1357128) Length: 72 bp
Type: Cys Anticodon: GCA at 33-35 (1357089-1357091) Score: 65.86
HMM Sc=37.15 Sec struct Sc=28.71
* | * | * | * | * | * | * |
Seq: GGCACCGTCGCCAAGTGGTAAGGCCCGGGTCTGCAAAACCCGTATtCGGCGGTTCGAATCCGCCCGGTGCCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna5 (1429611-1429684) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (1429643-1429645) Score: 55.48
HMM Sc=30.03 Sec struct Sc=25.45
* | * | * | * | * | * | * |
Seq: TGGGGGATCGTCTAACGGCAGGACGCCAGTCTCTGGATCTGGCTATCTAGGTTCGAATCCTAGTCCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<....>>>>>.......<<<<<<<<<<<<....
Contig178.trna6 (1429752-1429826) Length: 75 bp
Type: Glu Anticodon: CTC at 34-36 (1429785-1429787) Score: 77.37
HMM Sc=55.90 Sec struct Sc=21.47
* | * | * | * | * | * | * |
Seq: GGCCCGTTAGTCTAGCGGTtAGGACATCGGCCTCTCACGCCGAGAGCATGGGTTCAAGTCCCGTACGGGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig178.trna7 (1607905-1607980) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (1607938-1607940) Score: 84.35
HMM Sc=65.08 Sec struct Sc=19.27
* | * | * | * | * | * | * | *
Seq: GGGCCCGTGGCGCAGCTGGGAGCGCGTCTGAATGGCATTCAGAAGGtCACCGGTTCGATCCCGGTCGGGTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna8 (1745422-1745498) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (1745456-1745458) Score: 84.22
HMM Sc=58.15 Sec struct Sc=26.07
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCaGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig178.trna9 (2138290-2138361) Length: 72 bp
Type: Val Anticodon: GAC at 33-35 (2138322-2138324) Score: 76.13
HMM Sc=47.66 Sec struct Sc=28.47
* | * | * | * | * | * | * |
Seq: AGGCCCGTAGCTCAGTGGTAGAGCACTACCTTGACACGGTAGGGGtCGTCAGTTCAATCCTGACCGGGCCTA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna10 (2293799-2293870) Length: 72 bp
Type: Val Anticodon: CAC at 33-35 (2293831-2293833) Score: 80.83
HMM Sc=59.10 Sec struct Sc=21.73
* | * | * | * | * | * | * |
Seq: GGGCGCTTAGCTCAGCGGTAGAGCACAGCCTTCACACGGCTGGGGtCGCAGGTTCGAAACCTGCAGCGCCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna11 (2561562-2561645) Length: 84 bp
Type: Leu Anticodon: CAA at 34-36 (2561595-2561597) Score: 70.09
HMM Sc=28.58 Sec struct Sc=41.51
* | * | * | * | * | * | * | * |
Seq: GGCCCTCTGGCGGAACGGTaGACGCGCTCGACTCAAAATCGAGTGGGGTGATCCCCCGTCCCGGTTCGAGTCCGGGGAGGGCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>>.>><<.<<<..>>>>>.......<<<<<<<<<<<<.
Contig178.trna12 (2584374-2584455) Length: 82 bp
Type: Leu Anticodon: GAG at 35-37 (2584408-2584410) Score: 58.41
HMM Sc=26.09 Sec struct Sc=32.32
* | * | * | * | * | * | * | * |
Seq: GCCCAGGTGGTGGAACTGGTaGACACACCATCTTGAGGGGGTGGCGCCGTAAGGCGTGCGAGTTCGAATCTCGCCCTGGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.
Contig178.trna13 (2960259-2960334) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (2960292-2960294) Score: 84.97
HMM Sc=49.94 Sec struct Sc=35.03
* | * | * | * | * | * | * | *
Seq: TCCCCAGTAGCTCAGTTGGCAGAGCAGGTGACTGTTAATCACCGGGtCGCATGTTCGAGTCATGCCTGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna14 (3063374-3063446) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (3063407-3063409) Score: 75.29
HMM Sc=50.11 Sec struct Sc=25.18
* | * | * | * | * | * | * |
Seq: GAGGCGCTAGCTCAACTGGCAGAGCATCGGCCTTTTAAGCCGGTGGtTCTGGGTTCGATTCCCAGGCGCCTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna15 (3074419-3074491) Length: 73 bp
Type: Glu Anticodon: TTC at 35-37 (3074453-3074455) Score: 45.56
HMM Sc=12.30 Sec struct Sc=33.26
* | * | * | * | * | * | * |
Seq: GACCCCATCGTCTAGAGGCccAGGACTCGGCCCTTTCAAGGCCGCAACCGGGGTTCGAATCCCCGTGGGGTCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig178.trna16 (3181197-3181273) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (3181231-3181233) Score: 89.91
HMM Sc=68.89 Sec struct Sc=21.02
* | * | * | * | * | * | * | *
Seq: GCGCGGTTAGCTCAGCTGGAtAGAGCGTCGGCCTCCGGAGCCGAAGGcCACAGGTTCGAATCCTGTACCGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna17 (3923557-3923642) Length: 86 bp
Type: Leu Anticodon: TAA at 35-37 (3923591-3923593) Score: 64.88
HMM Sc=35.68 Sec struct Sc=29.20
* | * | * | * | * | * | * | * | *
Seq: GGGGCCGTGGCGGAACTGGCaGACGCGGCGGACTTAAAATCCGCTGCCGCGGAAGCGGCGTCCCGGTTCGATCCCGGGCGGCCCTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig178.trna18 (4640043-4640132) Length: 90 bp
Type: Ser Anticodon: TGA at 35-37 (4640077-4640079) Score: 78.47
HMM Sc=44.26 Sec struct Sc=34.21
* | * | * | * | * | * | * | * | *
Seq: GGAGGAGTGGCCGAGCGGTttAAGGCGGCGGTCTTGAAAACCGCAGAGGGTTCACGCCCTCCGAAGGTTCGAATCCTTCCTCCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig178.trna19 (4640154-4640243) Length: 90 bp
Type: Ser Anticodon: GCT at 35-37 (4640188-4640190) Score: 68.53
HMM Sc=30.63 Sec struct Sc=37.90
* | * | * | * | * | * | * | * | *
Seq: GGAAAGGTGGCCGAGAGGCcgAAGGCGCTGGTTTGCTAAACCAGTATACGGGTAACCGTATCCAGGGTTCGAATCCCTGCCTTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig178.trna20 (4640302-4640378) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (4640336-4640338) Score: 80.60
HMM Sc=59.77 Sec struct Sc=20.83
* | * | * | * | * | * | * | *
Seq: GGGCCCTTAGCTCAGTTGGAtAGAGCGTCGGACTACGAATCCGAAGGcCAGAGGTTCAAATCCTCTAGGGCCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna21 (4945837-4945912) Length: 76 bp
Type: Gly Anticodon: CCC at 34-36 (4945870-4945872) Score: 96.29
HMM Sc=76.09 Sec struct Sc=20.20
* | * | * | * | * | * | * | *
Seq: GCGGGAATAGCTCAGTTGGTAGAGCATCAGCTTCCCAAGCTGAGGGtCGCCGGTTCGAACCCGGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna22 (4386061-4385974) Length: 88 bp
Type: Ser Anticodon: CGA at 36-38 (4386026-4386024) Score: 70.08
HMM Sc=36.88 Sec struct Sc=33.20
* | * | * | * | * | * | * | * | *
Seq: GGAGAGCTGGCCGAGCTGGTcgAAGGCGCCTGACTCGAAATCAGGTGTACCGGCAACGGTACCGGGGGTTCGAATCCCTCGCTCTCCG
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig178.trna23 (4385905-4385816) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (4385871-4385869) Score: 68.29
HMM Sc=31.50 Sec struct Sc=36.79
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGACCGAGCGGCtgAAGGTGCACGACTGGAAATCGTGTGTACCGGGAACGGTACCGTGGGTTCAAATCCCACCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig178.trna24 (4295731-4295657) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (4295699-4295697) Score: 93.84
HMM Sc=72.80 Sec struct Sc=21.04
* | * | * | * | * | * | * |
Seq: GCGGGAATAGCTCAGTGGTAGAGCATCGCCTTGCCAAGGCGAGGGtCGAGGGTTCAAATCCCTTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna25 (4026059-4025986) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (4026025-4026023) Score: 78.89
HMM Sc=58.51 Sec struct Sc=20.38
* | * | * | * | * | * | * |
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGCGCCTGCCTTGGGCGCAGGAGGtCGCGGGTCCGAATCCCGCCGCCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna26 (4025924-4025848) Length: 77 bp
Type: Arg Anticodon: TCG at 35-37 (4025890-4025888) Score: 92.99
HMM Sc=77.81 Sec struct Sc=15.18
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGCGTCGGCCTTCGAAGCCGCAGGtCGGGGGTTCGATTCCCTCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig178.trna27 (4025805-4025730) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (4025772-4025770) Score: 77.83
HMM Sc=57.13 Sec struct Sc=20.70
* | * | * | * | * | * | * | *
Seq: GTGAGTATAGCTCAATCGGTAGAGCACTGGACTGTGGATCCGGGGGtTAAGGGTTCGAGCCCCTTTACTCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna28 (4025709-4025633) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (4025675-4025673) Score: 90.19
HMM Sc=71.88 Sec struct Sc=18.31
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGCAGCGGCCTTCTAAGCCGCGGGtCGGGGGTTCGACTCCCTCCGGGCGTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna29 (4025517-4025445) Length: 73 bp
Type: Lys Anticodon: CTT at 34-36 (4025484-4025482) Score: 82.33
HMM Sc=61.84 Sec struct Sc=20.49
* | * | * | * | * | * | * |
Seq: GGGCGCGTAGCTCAACTGGCAGAGCAATGGACTCTTAATCCATAGGtTGAAGGTTCGATTCCTTCCGCGCTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna30 (4024815-4024734) Length: 82 bp
Type: Leu Anticodon: TAG at 35-37 (4024781-4024779) Score: 71.95
HMM Sc=47.88 Sec struct Sc=24.07
* | * | * | * | * | * | * | * |
Seq: GGGCGGGTGGCGGAACTGGCaGACGCACCAGACTTAGGATCTGGCGCCGAGAGGCGTGAGGGTTCGAGTCCCTCCCCGCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.
Contig178.trna31 (3968512-3968435) Length: 78 bp
Type: Ile Anticodon: GAT at 36-38 (3968477-3968475) Score: 100.49
HMM Sc=78.38 Sec struct Sc=22.11
* | * | * | * | * | * | * | *
Seq: GGGCCTATAGCTCAGTTGGTttAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCAAATCCACCTAGGCCCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna32 (3968413-3968338) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (3968380-3968378) Score: 95.55
HMM Sc=78.84 Sec struct Sc=16.71
* | * | * | * | * | * | * | *
Seq: GGGGCTGTAGCTCAGTTGGTAGAGCGCCAGCTTTGCAAGCTGGATGtCGTCGGTTCGACTCCGATCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna33 (3901383-3901310) Length: 74 bp
Type: Pro Anticodon: CGG at 35-37 (3901349-3901347) Score: 82.37
HMM Sc=60.98 Sec struct Sc=21.39
* | * | * | * | * | * | * |
Seq: CGGGGAGTGGCTCAGCCtGGTAGAGCACTTGGTTCGGGACCAAGGGGtCGCAGGTTCAAATCCTGTCTCCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna34 (2981553-2981476) Length: 78 bp
Type: Ile Anticodon: GAT at 36-38 (2981518-2981516) Score: 100.49
HMM Sc=78.38 Sec struct Sc=22.11
* | * | * | * | * | * | * | *
Seq: GGGCCTATAGCTCAGTTGGTttAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCAAATCCACCTAGGCCCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna35 (2981454-2981379) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (2981421-2981419) Score: 95.55
HMM Sc=78.84 Sec struct Sc=16.71
* | * | * | * | * | * | * | *
Seq: GGGGCTGTAGCTCAGTTGGTAGAGCGCCAGCTTTGCAAGCTGGATGtCGTCGGTTCGACTCCGATCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna36 (2725722-2725649) Length: 74 bp
Type: Arg Anticodon: CCT at 35-37 (2725688-2725686) Score: 72.85
HMM Sc=45.93 Sec struct Sc=26.92
* | * | * | * | * | * | * |
Seq: GGCCCCGTAGCTCAGCTGGAcAGAGCGGCGGTTTCCTAAACCGTAGGcCGGGCGTTCGAGTCGCCCCGGGGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna37 (2531266-2531191) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (2531233-2531231) Score: 86.64
HMM Sc=69.91 Sec struct Sc=16.73
* | * | * | * | * | * | * | *
Seq: GCTGGCGTAGCTCAGTTGGTAGAGCAGCTGCCTTGTAAGCAGCAGGtCGCGGGTTCGAGTCCCACCGCCAGCTCAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig178.trna38 (2531134-2531052) Length: 83 bp
Type: Tyr Anticodon: GTA at 35-37 (2531100-2531098) Score: 64.15
HMM Sc=29.55 Sec struct Sc=34.60
* | * | * | * | * | * | * | * |
Seq: GGAGGGGTTCCCGAGCGGCcaAAGGGAGCAGACTGTAAATCTGCCGGCTTACGCCTtCGGTGGTTCGAATCCACCCCCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig178.trna39 (2531009-2530934) Length: 76 bp
Type: Gly Anticodon: TCC at 34-36 (2530976-2530974) Score: 98.41
HMM Sc=78.98 Sec struct Sc=19.43
* | * | * | * | * | * | * | *
Seq: GCGGGAATAGCTCAGTTGGTAGAGCGTCAGCCTTCCAAGCTGAATGtCGCGGGTTCGAATCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna40 (2530905-2530830) Length: 76 bp
Type: Thr Anticodon: GGT at 34-36 (2530872-2530870) Score: 80.44
HMM Sc=46.70 Sec struct Sc=33.74
* | * | * | * | * | * | * | *
Seq: GCCCTCGTAGCTCAGTCGGTAGAGCGCGTCCTTGGTAAGGACGAGGtCTCCAGTTCAATCCTGGACGAGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna41 (2529383-2529308) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (2529350-2529348) Score: 76.72
HMM Sc=53.04 Sec struct Sc=23.68
* | * | * | * | * | * | * | *
Seq: AGGCCAGTAGCTCGAACGGTAGAGCAGCGGTCTCCAAAACCGCGGGtTGGGGGTTCGAATCCCTCCTGGCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna42 (2330969-2330894) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (2330936-2330934) Score: 92.66
HMM Sc=65.45 Sec struct Sc=27.21
* | * | * | * | * | * | * | *
Seq: GCCGACATAGCTCAGCTGGTAGAGCAACTGATTCGTAATCAGTAGGtCCCCAGTTCAAGTCTGGGTGTCGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna43 (2249979-2249906) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (2249945-2249943) Score: 77.76
HMM Sc=55.24 Sec struct Sc=22.52
* | * | * | * | * | * | * |
Seq: GGTGAGGTAGCTCAGTCGGCtAGAGCGAGGGTCTCATAATCCCTAGGtCGGGAGTTCGATTCTCCCCCTCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna44 (2231092-2230998) Length: 95 bp
Type: SeC(p) Anticodon: TCA at 36-38 (2231057-2231055) Score: 32.91
HMM Sc=0.00 Sec struct Sc=0.00
* | * | * | * | * | * | * | * | * |
Seq: GGCAGAGCGTCCTaGGCTGGTGCCGGGCCCGGTCTTCAAAACCGGTGGATGGTGCtgagAGGCGCTGTTGGGGGGTTCGATTCCCCTGCTCTGCC
Str: >>>>>>>>..>>>.>>>....<<<<<<.>>>>>.......<<<<<..>>>>>>>........<<<<<<<.>>>>>.......<<<<<<<<<<<<<
Contig178.trna45 (1232457-1232384) Length: 74 bp
Type: Pro Anticodon: GGG at 35-37 (1232423-1232421) Score: 80.00
HMM Sc=57.41 Sec struct Sc=22.59
* | * | * | * | * | * | * |
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGCACTTGCTTGGGGTGCAAGTGGtCGCTGGTTCAAATCCAGTCGCCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna46 (1070143-1070068) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (1070110-1070108) Score: 86.27
HMM Sc=68.09 Sec struct Sc=18.18
* | * | * | * | * | * | * | *
Seq: GGGGCTGTAGCTCAGCTGGGAGAGCGCTAGAATCGCACTCTAGAGGtCGTCGGTTCGATCCCGATCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig178.trna47 (719094-719011) Length: 84 bp
Type: Leu Anticodon: CAG at 35-37 (719060-719058) Score: 60.82
HMM Sc=37.34 Sec struct Sc=23.48
* | * | * | * | * | * | * | * |
Seq: GCCCAGGTGGCGGAACTGGTaGACGCACCAGATTCAGGGTCTGGCGGCCTCAAAACCGTGGAGGTTCGAATCCTCTCCTGGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>........<<..>>>>>.......<<<<<<<<<<<<.
Contig178.trna48 (688874-688803) Length: 72 bp
Type: Val Anticodon: TAC at 33-35 (688842-688840) Score: 78.73
HMM Sc=56.80 Sec struct Sc=21.93
* | * | * | * | * | * | * |
Seq: GGGCGGATAGCTCAGGGGTAGAGCGTCGCCCTTACAAGGCGAGGGtCACAGGTTCGAAGCCTGTTCCGCCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig178.trna49 (688786-688710) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (688752-688750) Score: 86.30
HMM Sc=62.27 Sec struct Sc=24.03
* | * | * | * | * | * | * | *
Seq: GGGGTGTTAGTTAAGTCGGTtATAACGCCGGCCTGTCACGCCGGAGGcCAGGGGTTCGAGTCCCCTACACCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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