Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 3 |
| Arg | 5 |
| Asn | 1 |
| Asp | 1 |
| Cys | 0 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 0 |
| Leu | 5 |
| Lys | 1 |
| Met | 3 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 1 |
| Ser | 3 |
| Thr | 3 |
| Trp | 0 |
| Tyr | 1 |
| Undet | 3 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig212 | 3 | 63775 ..63702 | 0..0 | 75.23 | 53.90 |
| Ala | GGC | Contig88 | 3 | 6272 ..6199 | 0..0 | 74.75 | 53.42 |
| Ala | TGC | Contig158 | 3 | 42004..41928 | 0..0 | 76.48 | 55.13 |
| Arg | CCG | Contig158 | 4 | 11391..11317 | 0..0 | 72.58 | 55.78 |
| Arg | CCG | Contig90 | 2 | 30140..30066 | 0..0 | 72.58 | 55.78 |
| Arg | CCT | Contig88 | 1 | 48409..48496 | 0..0 | 62.75 | 46.42 |
| Arg | GCG | Contig87 | 1 | 888 ..962 | 0..0 | 74.79 | 53.71 |
| Arg | TCG | Contig86 | 2 | 101167..101241 | 0..0 | 77.22 | 56.14 |
| Asn | GTT | Contig160 | 3 | 24359 ..24273 | 0..0 | 66.91 | 58.59 |
| Asp | GTC | Contig159 | 3 | 6323 ..6395 | 0..0 | 60.05 | 31.09 |
| Gln | CTG | Contig86 | 13 | 44254 ..44179 | 0..0 | 53.62 | 23.33 |
| Gln | TTG | Contig87 | 5 | 74522 ..74447 | 0..0 | 54.25 | 23.96 |
| Glu | CTC | Contig86 | 3 | 118229..118321 | 0..0 | 47.46 | 20.10 |
| Glu | TTC | Contig87 | 3 | 17623 ..17715 | 0..0 | 40.41 | 13.65 |
| Gly | CCC | Contig86 | 7 | 174848..174923 | 0..0 | 71.50 | 47.84 |
| Gly | GCC | Contig87 | 6 | 74196 ..74121 | 0..0 | 77.47 | 53.85 |
| Gly | TCC | Contig88 | 4 | 792 ..717 | 0..0 | 72.13 | 48.47 |
| His | GTG | Contig159 | 4 | 11424 ..11497 | 0..0 | 75.73 | 51.32 |
| Leu | CAA | Contig85 | 1 | 8560 ..8462 | 0..0 | 48.38 | 21.94 |
| Leu | CAG | Contig86 | 9 | 126158..126074 | 0..0 | 60.66 | 27.13 |
| Leu | GAG | Contig163 | 2 | 383208..383124 | 0..0 | 55.28 | 25.83 |
| Leu | TAA | Contig86 | 8 | 128283..128184 | 0..0 | 41.72 | 12.54 |
| Leu | TAG | Contig86 | 12 | 101635..101551 | 0..0 | 58.91 | 27.91 |
| Lys | CTT | Contig159 | 5 | 52232 ..52327 | 0..0 | 49.91 | 32.29 |
| Met | CAT | Contig159 | 2 | 6127 ..6229 | 0..0 | 40.19 | 10.51 |
| Met | CAT | Contig86 | 10 | 124696..124623 | 0..0 | 85.38 | 65.24 |
| Met | CAT | Contig87 | 2 | 12772 ..12866 | 0..0 | 59.72 | 53.48 |
| Phe | GAA | Contig86 | 6 | 169984..170060 | 0..0 | 79.89 | 57.16 |
| Pro | CGG | Contig88 | 2 | 7758 ..7683 | 0..0 | 55.72 | 24.70 |
| Pro | GGG | Contig212 | 2 | 80969 ..81065 | 0..0 | 42.35 | 16.81 |
| Pro | TGG | Contig160 | 2 | 24967 ..24892 | 0..0 | 70.10 | 48.47 |
| Pseudo | CGA | Contig86 | 5 | 124162..124269 | 0..0 | 26.62 | -8.56 |
| Ser | GCT | Contig160 | 1 | 23901 ..23985 | 0..0 | 62.84 | 35.19 |
| Ser | GGA | Contig159 | 1 | 4788 ..4871 | 0..0 | 66.34 | 33.03 |
| Ser | TGA | Contig87 | 4 | 119161..119245 | 0..0 | 68.13 | 35.50 |
| Thr | CGT | Contig158 | 2 | 58165..58252 | 0..0 | 69.21 | 58.71 |
| Thr | GGT | Contig163 | 1 | 6390 ..6464 | 0..0 | 84.13 | 60.32 |
| Thr | TGT | Contig86 | 1 | 44418 ..44507 | 0..0 | 69.53 | 57.95 |
| Tyr | GTA | Contig86 | 4 | 122648..122736 | 0..0 | 59.18 | 35.83 |
| Undet | ??? | Contig159 | 6 | 69903 ..69999 | 0..0 | 55.71 | 37.34 |
| Undet | ??? | Contig212 | 1 | 65712 ..65797 | 0..0 | 63.77 | 45.77 |
| Undet | ??? | Contig90 | 1 | 28341..28430 | 0..0 | 48.67 | 32.24 |
| Val | CAC | Contig159 | 7 | 70240 ..70166 | 0..0 | 71.34 | 44.72 |
| Val | GAC | Contig158 | 1 | 30749..30823 | 0..0 | 70.30 | 47.00 |
| Val | TAC | Contig86 | 11 | 118568..118491 | 0..0 | 74.08 | 46.21 |
tRNA Models
Contig158.trna1 (30749-30823) Length: 75 bp
Type: Val Anticodon: GAC at 36-38 (30784-30786) Score: 70.30
HMM Sc=47.00 Sec struct Sc=23.30
* | * | * | * | * | * | * |
Seq: GGGCCCGTCGTCTAGCCtGGTtAGGACGTCGCCCTGACACGGCGGAGGtCCTGGGTTCAAATCCCAGCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig158.trna2 (58165-58252) Length: 88 bp
Type: Thr Anticodon: CGT at 36-38 (58200-58202) Score: 69.21
HMM Sc=58.71 Sec struct Sc=10.50
* | * | * | * | * | * | * | * | *
Seq: GCCGCCGTAGCTCAGCCtGGTtAGAGCGCCGGCCTCGTACccaaagtgagataGCCGGTGGtCGCGGGTTCGAATCCCGCCGGCGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig158.trna3 (42004-41928) Length: 77 bp
Type: Ala Anticodon: TGC at 35-37 (41970-41968) Score: 76.48
HMM Sc=55.13 Sec struct Sc=21.35
* | * | * | * | * | * | * | *
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGTGCTCGGTTTGCACCCGAGAGGtCCCGGGTTCAAATCCCGGCCGGTCCACCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig158.trna4 (11391-11317) Length: 75 bp
Type: Arg Anticodon: CCG at 36-38 (11356-11354) Score: 72.58
HMM Sc=55.78 Sec struct Sc=16.80
* | * | * | * | * | * | * |
Seq: GGACCCGTAGCTCAGCCaGGAtAGAGCACTGGCCTCCGGAGCCGGTGGtCCCGGGTTCAAATCCCGGCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig159.trna1 (4788-4871) Length: 84 bp
Type: Ser Anticodon: GGA at 35-37 (4822-4824) Score: 66.34
HMM Sc=33.03 Sec struct Sc=33.31
* | * | * | * | * | * | * | * |
Seq: GCCGGGGTGCCCGAGCGGActAAGGGGCTGGCCTGGAGAGCCAGTGGGGGTTTCCCCGCACGGGTTCAAATCCCGTCCCCGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...<<<<..>>>>>.......<<<<<<<<<<<<.
Contig159.trna2 (6127-6229) Length: 103 bp
Type: Met Anticodon: CAT at 36-38 (6162-6164) Score: 40.19
HMM Sc=10.51 Sec struct Sc=29.68
* | * | * | * | * | * | * | * | * | * |
Seq: AGCGGGGTGGGCTAGCCtGGTaAGGCCGCGGGGCTCATATactctttaaagcacgcgttgggaaaCCCCGAGGtCCCTGGTTCAAATCCAGGCCCCGCTACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig159.trna3 (6323-6395) Length: 73 bp
Type: Asp Anticodon: GTC at 35-37 (6357-6359) Score: 60.05
HMM Sc=31.09 Sec struct Sc=28.96
* | * | * | * | * | * | * |
Seq: GCCGCGGTAGTCTAGTGGTctAGGATGGGGGCCTGTCGAGCCCCTGACCCGGGTTCAAATCCCGGCCGCGGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig159.trna4 (11424-11497) Length: 74 bp
Type: His Anticodon: GTG at 35-37 (11458-11460) Score: 75.73
HMM Sc=51.32 Sec struct Sc=24.41
* | * | * | * | * | * | * |
Seq: GCTCGGGTAGCTCAGCCtGGAAGAGCGCCGGGCTGTGGACCCGGAAGtCCCGGGTTCAAATCCCGGCCCGAGCC
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig159.trna5 (52232-52327) Length: 96 bp
Type: Lys Anticodon: CTT at 35-37 (52266-52268) Score: 49.91
HMM Sc=32.29 Sec struct Sc=17.62
* | * | * | * | * | * | * | * | * | *
Seq: GGGCCCGTAGCTTAGCCaGGTAGAGCGACGGGCTCTTAAccatgtaagaaaagcggagataCCCGTAGGtCCCGGGTTCGAATCCCGGCGGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.............................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig159.trna6 (69903-69999) Length: 97 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 55.71
HMM Sc=37.34 Sec struct Sc=18.37
* | * | * | * | * | * | * | * | * | *
Seq: GGGCCCGTAGCTCAGCCaGGTAGAGCGGCGGGCTTTTAACCGCAAagggTTGCGGAaaGCAACCCGTAGGtCCCGGGTTCGAATCCCGGCGGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>........<<<<......>>>>>>........<<<<<<...>>>>>.......<<<<<<<<<<<<.
Contig159.trna7 (70240-70166) Length: 75 bp
Type: Val Anticodon: CAC at 36-38 (70205-70203) Score: 71.34
HMM Sc=44.72 Sec struct Sc=26.62
* | * | * | * | * | * | * |
Seq: GGGCCCGTCGTCTAGCCtGGTtAGGACGCCGCCCTCACACGGCGGAGAtCCTGGGTTCAAATCCCAGCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig160.trna1 (23901-23985) Length: 85 bp
Type: Ser Anticodon: GCT at 35-37 (23935-23937) Score: 62.84
HMM Sc=35.19 Sec struct Sc=27.65
* | * | * | * | * | * | * | * |
Seq: GCCGAGGTCGCCTAGCCaGGTAGGGCGGCGGCCTGCTAAGCCGCTGGGGATTCTCCCCACGCGGGTTCAAATCCCGCCCTCGGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>......<<<..>>>>>.......<<<<<<<<<<<<.
Contig160.trna2 (24967-24892) Length: 76 bp
Type: Pro Anticodon: TGG at 37-39 (24931-24929) Score: 70.10
HMM Sc=48.47 Sec struct Sc=21.63
* | * | * | * | * | * | * | *
Seq: GGGGCCGTAGTCTAGCCtGGActAGGACGCCAGGCTTGGGCCCTGGTGAtCGCGGGTTCAAATCCCGCCGGCCCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig160.trna3 (24359-24273) Length: 87 bp
Type: Asn Anticodon: GTT at 34-36 (24326-24324) Score: 66.91
HMM Sc=58.59 Sec struct Sc=8.32
* | * | * | * | * | * | * | * | *
Seq: GCCGGAGTAGCTCAGTTGGCAGAGCGCCCGGCTGTTATgccgggtgcagaaaCCGGGTGGtCGGAGGTTCGAGTCCTCCCTCCGGCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig163.trna1 (6390-6464) Length: 75 bp
Type: Thr Anticodon: GGT at 36-38 (6425-6427) Score: 84.13
HMM Sc=60.32 Sec struct Sc=23.81
* | * | * | * | * | * | * |
Seq: GCCGCGGTAGCTCAGCCtGGTcAGAGCGCTGCCCTGGTAAGGCAGAGGtCCCGGGTTCAAATCCCGGCCGCGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig163.trna2 (383208-383124) Length: 85 bp
Type: Leu Anticodon: GAG at 37-39 (383172-383170) Score: 55.28
HMM Sc=25.83 Sec struct Sc=29.45
* | * | * | * | * | * | * | * |
Seq: GCGGGGGTGCCCGAGTCaGGGcaAAGGGGGCGGACTGAGGCTCCGCTGGCGAAGGCCTgCACGGGTTCAAATCCCGTCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig212.trna1 (65712-65797) Length: 86 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 63.77
HMM Sc=45.77 Sec struct Sc=18.00
* | * | * | * | * | * | * | * | *
Seq: GGGCCCGTAGCTTAGCTtGGTGGAGCGCCCGGCTGATAgggtgctcagaaaCCGGGAGGtCACGGGTTCAAATCCCGTCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>...................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig212.trna2 (80969-81065) Length: 97 bp
Type: Pro Anticodon: GGG at 37-39 (81005-81007) Score: 42.35
HMM Sc=16.81 Sec struct Sc=25.54
* | * | * | * | * | * | * | * | * | *
Seq: GGGGCCGTAGTCTAGCTtGGActAGGATGCCAGCCTGGGGAtactaccctaaccaccagaacGCTGGTGGtCCCGGGTTCAAATCCCGGCGGCCCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>............................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig212.trna3 (63775-63702) Length: 74 bp
Type: Ala Anticodon: CGC at 35-37 (63741-63739) Score: 75.23
HMM Sc=53.90 Sec struct Sc=21.33
* | * | * | * | * | * | * |
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGTGCTCGGTTCGCACCCGAGAGGtCCCGGGTTCAAATCCCGGCCGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig85.trna1 (8560-8462) Length: 99 bp
Type: Leu Anticodon: CAA at 36-38 (8525-8523) Score: 48.38
HMM Sc=21.94 Sec struct Sc=26.44
* | * | * | * | * | * | * | * | * | *
Seq: GCGGGGGTGCCCGAGCTGGTcaAAGGGGGCGGACTCAAGAccctttagtaagagaTCCGCTGGCGAAGGCCTtCGCGGGTTCAAATCCCGTCCCCCGCA
Str: >>>>>>>..>>>............<<<.>>>>>......................<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig86.trna1 (44418-44507) Length: 90 bp
Type: Thr Anticodon: TGT at 36-38 (44453-44455) Score: 69.53
HMM Sc=57.95 Sec struct Sc=11.58
* | * | * | * | * | * | * | * | *
Seq: GCCGCCGTAGCTCAGCCtGGTtAGAGCGCCGGCCTTGTAAgttactgcctagataGCCGGCGGtCGCGGGTTCGAATCCCGCCGGCGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig86.trna2 (101167-101241) Length: 75 bp
Type: Arg Anticodon: TCG at 36-38 (101202-101204) Score: 77.22
HMM Sc=56.14 Sec struct Sc=21.08
* | * | * | * | * | * | * |
Seq: GGACCCGTAGCTCAGCTaGGAtGGAGCGCCGGCCTTCGGAGCCGGTGGtCCCGGGTTCAAATCCCGGCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig86.trna3 (118229-118321) Length: 93 bp
Type: Glu Anticodon: CTC at 52-54 (118280-118282) Score: 47.46
HMM Sc=20.10 Sec struct Sc=27.36
* | * | * | * | * | * | * | * | * |
Seq: GCCGCGGTGGTTTAGCCcGGTcAagcgcaggcaccgaaaGAATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGCGGCACCA
Str: >>>>>>>..>>>>..........................<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig86.trna4 (122648-122736) Length: 89 bp
Type: Tyr Anticodon: GTA at 37-39 (122684-122686) Score: 59.18
HMM Sc=35.83 Sec struct Sc=23.35
* | * | * | * | * | * | * | * | *
Seq: CCCGCCGTAGCTCAGCCcGGTttAGAGCGCCCGGCTGTAGAtaggggacagtaaCCGGGTGGtCCGGGGTTCAAGTCCCCGCGGCGGGA
Str: >>>>>>>..>>>>...........<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig86.trna5 (124162-124269) Length: 108 bp
Type: Ser Anticodon: CGA at 34-36 (124195-124197) Score: 26.62
Possible pseudogene: HMM Sc=-8.56 Sec struct Sc=35.18
* | * | * | * | * | * | * | * | * | * | *
Seq: GCCGGGGTGCCCGAGCGGTcAAGGGGGTAGGCTCGAGAcctttccagcgttgctgcgagggaCCTACTGCCTCTCTGAGGCACACGGGTTCGAATCCCGTCCCCGGCG
Str: >>>>>>>..>>>..........<<<.>>>>>...............................<<<<<.>>>>>...<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig86.trna6 (169984-170060) Length: 77 bp
Type: Phe Anticodon: GAA at 35-37 (170018-170020) Score: 79.89
HMM Sc=57.16 Sec struct Sc=22.73
* | * | * | * | * | * | * | *
Seq: GCCGCCGTAGCTCAGCCcGGGAGAGCGCCCGGCTGAAGACCGGGTTGtCCGGGGTTCAAGTCCCCGCGGCGGCACCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig86.trna7 (174848-174923) Length: 76 bp
Type: Gly Anticodon: CCC at 37-39 (174884-174886) Score: 71.50
HMM Sc=47.84 Sec struct Sc=23.66
* | * | * | * | * | * | * | *
Seq: GCGGCCGTAGTCTAGGCtGGAttAGGACGCCGGCCTCCCAAGCCGGTGAtCCCGGGTTCAAATCCCGGCGGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig86.trna8 (128283-128184) Length: 100 bp
Type: Leu Anticodon: TAA at 37-39 (128247-128245) Score: 41.72
HMM Sc=12.54 Sec struct Sc=29.18
* | * | * | * | * | * | * | * | * | *
Seq: GCGGGGGTGCCCGAGCCtGGTcaAAGGGGGCGGACTTAAGAcccccaagtaagagaTCCGCTGGCGAAGGCCTgCACGGGTTCGAATCCCGTCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>......................<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig86.trna9 (126158-126074) Length: 85 bp
Type: Leu Anticodon: CAG at 37-39 (126122-126120) Score: 60.66
HMM Sc=27.13 Sec struct Sc=33.53
* | * | * | * | * | * | * | * |
Seq: GCGGGGGTGCCCGAGCTaGGTcgAAGGGGGTAGGCTCAGGCCCTACTGGCGAAGGCCTtCGCGGGTTCAAATCCCGCCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig86.trna10 (124696-124623) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (124662-124660) Score: 85.38
HMM Sc=65.24 Sec struct Sc=20.14
* | * | * | * | * | * | * |
Seq: GGGCCCGTAGCTTAGCTcGGTAGAGCGCTCGGCTCATAACCGAGTGGtCAGGGGTTCAAATCCCCTCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig86.trna11 (118568-118491) Length: 78 bp
Type: Val Anticodon: TAC at 36-38 (118533-118531) Score: 74.08
HMM Sc=46.21 Sec struct Sc=27.87
* | * | * | * | * | * | * | *
Seq: GGGCCCGTCGTCTAGCCtGGTtAGGACGCTGCCCTTACGAGGCAGAGGtCCTGGGTTCAAATCCCAGCGGGCCCACTA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig86.trna12 (101635-101551) Length: 85 bp
Type: Leu Anticodon: TAG at 37-39 (101599-101597) Score: 58.91
HMM Sc=27.91 Sec struct Sc=31.00
* | * | * | * | * | * | * | * |
Seq: GCGGGGGTGCCCGAGCTaGGTcaAAGGGGGCAGGCTTAGGCCCTGCTGGCGAAGGCCTgCACGGGTTCGAATCCCGTCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig86.trna13 (44254-44179) Length: 76 bp
Type: Gln Anticodon: CTG at 35-37 (44220-44218) Score: 53.62
HMM Sc=23.33 Sec struct Sc=30.29
* | * | * | * | * | * | * | *
Seq: AGCCGGGTAGTCTAGTGGTcaAGGATCCAGGGCTCTGGCCCCTGGGACCAGGGTTCGAATCCCTGCCCGGCTACCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig87.trna1 (888-962) Length: 75 bp
Type: Arg Anticodon: GCG at 36-38 (923-925) Score: 74.79
HMM Sc=53.71 Sec struct Sc=21.08
* | * | * | * | * | * | * |
Seq: GGACCCGTAGCTCAGCCaGGAtAGAGCGCCGGCCTGCGGAGCCGGCGAtCCCGGGTTCAAATCCCGGCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig87.trna2 (12772-12866) Length: 95 bp
Type: Met Anticodon: CAT at 36-38 (12807-12809) Score: 59.72
HMM Sc=53.48 Sec struct Sc=6.24
* | * | * | * | * | * | * | * | * |
Seq: GCCGCCGTAGCTCAGCCtGGCtAGAGCGCCGGACTCATACgcgtaatatctgggaaaTCCGGTTGtCCGGGGTTCAAATCCCCGCGGCGGCACCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>........................<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig87.trna3 (17623-17715) Length: 93 bp
Type: Glu Anticodon: TTC at 52-54 (17674-17676) Score: 40.41
HMM Sc=13.65 Sec struct Sc=26.76
* | * | * | * | * | * | * | * | * |
Seq: GCCGCGGTGGTTTAGCCcGGTcAagcgcaggcaccgaaaGAATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGCGGCACTA
Str: >>>>>>>..>>>>..........................<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig87.trna4 (119161-119245) Length: 85 bp
Type: Ser Anticodon: TGA at 35-37 (119195-119197) Score: 68.13
HMM Sc=35.50 Sec struct Sc=32.63
* | * | * | * | * | * | * | * |
Seq: GCCGGGGTGCCCGAGTGGTccAAGGGGCTGGCCTTGAGAGCCAGTAGGCGTAAaGCCTGCGCGGGTTCAAATCCCGTCCCCGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<.
Contig87.trna5 (74522-74447) Length: 76 bp
Type: Gln Anticodon: TTG at 35-37 (74488-74486) Score: 54.25
HMM Sc=23.96 Sec struct Sc=30.29
* | * | * | * | * | * | * | *
Seq: AGCCGGGTAGTCTAGTGGTcaAGGATCCAGGGCTTTGGCCCCTGGGACCAGGGTTCGAATCCCTGCCCGGCTACCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig87.trna6 (74196-74121) Length: 76 bp
Type: Gly Anticodon: GCC at 37-39 (74160-74158) Score: 77.47
HMM Sc=53.85 Sec struct Sc=23.62
* | * | * | * | * | * | * | *
Seq: GCGGCCGTAGTCTAGCCtGGAttAGGACGCCTGCCTGCCACGCAGGAGGtCCCGGGTTCAAATCCCGGCGGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig88.trna1 (48409-48496) Length: 88 bp
Type: Arg Anticodon: CCT at 36-38 (48444-48446) Score: 62.75
HMM Sc=46.42 Sec struct Sc=16.33
* | * | * | * | * | * | * | * | *
Seq: GGACCCGTAGCTCAGCCaGGAtAGAGCGCCGGCCTCCTAActttcggaagaaaGCCGGTGGtCGCGGGTTCGAATCCCGCCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig88.trna2 (7758-7683) Length: 76 bp
Type: Pro Anticodon: CGG at 37-39 (7722-7720) Score: 55.72
HMM Sc=24.70 Sec struct Sc=31.02
* | * | * | * | * | * | * | *
Seq: GGGTCCGTGGTCTAGCCtGGActAGGATGCGACGTTCGGGTCGTCGTGGtCCCGGGTTCAAATCCCGGCGGACCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig88.trna3 (6272-6199) Length: 74 bp
Type: Ala Anticodon: GGC at 35-37 (6238-6236) Score: 74.75
HMM Sc=53.42 Sec struct Sc=21.33
* | * | * | * | * | * | * |
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGTGCTCGGTTGGCATCCGAGAGGtCCCGGGTTCAAATCCCGGCCGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig88.trna4 (792-717) Length: 76 bp
Type: Gly Anticodon: TCC at 37-39 (756-754) Score: 72.13
HMM Sc=48.47 Sec struct Sc=23.66
* | * | * | * | * | * | * | *
Seq: GCGGCCGTAGTCTAGGCtGGAttAGGACGCCGGCCTTCCAAGCCGGTGAtCCCGGGTTCAAATCCCGGCGGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig90.trna1 (28341-28430) Length: 90 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 48.67
HMM Sc=32.24 Sec struct Sc=16.43
* | * | * | * | * | * | * | * | *
Seq: GGACCCGTAGCTCAGCCaGGAcGGAGCGCCGGCCTTCTAgcgtctaagggggataGCCGGCGGtCCCGGGTTCAAATCCCGGCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig90.trna2 (30140-30066) Length: 75 bp
Type: Arg Anticodon: CCG at 36-38 (30105-30103) Score: 72.58
HMM Sc=55.78 Sec struct Sc=16.80
* | * | * | * | * | * | * |
Seq: GGACCCGTAGCTCAGCCaGGAtAGAGCACTGGCCTCCGGAGCCGGTGGtCCCGGGTTCAAATCCCGGCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
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