proteins
| 33 proteins |
H | COG1072 | Panthothenate kinase | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Bacillus halodurans (Bacillales | Bacilli) | ||||
| BH2875 | ||||
147 letters (r) 0
0 629 ||| 1 BH2338 (147) 117
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BH2338
(147 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
BH2338 246 9e-66
BS_gntK 32 0.46
DRA0188 30 1.9
SPy1233 30 2.1
YPO2984 29 3.9
Cgl0675 28 9.3
aq_527 28 9.4
# >BH2338
# Length = 147
#
# Score = 246 bits (629), Expect = 9e-66
# Identities = 147/147 (100%), Positives = 147/147 (100%)
#
# Query: 1 MGQESNLFFMRDSYATSHFLDWFSKEREDILTKEQIRFLSIMKYFQRDRFDEYTIPYSQL 60
# MGQESNLFFMRDSYATSHFLDWFSKEREDILTKEQIRFLSIMKYFQRDRFDEYTIPYSQL
# Sbjct: 1 MGQESNLFFMRDSYATSHFLDWFSKEREDILTKEQIRFLSIMKYFQRDRFDEYTIPYSQL 60
#
# Query: 61 PDKCKPYSESARDHHKRRIKGRIENAYANAEKKSLREMAEDRELEFGAEFMEIVEIDDQN 120
# PDKCKPYSESARDHHKRRIKGRIENAYANAEKKSLREMAEDRELEFGAEFMEIVEIDDQN
# Sbjct: 61 PDKCKPYSESARDHHKRRIKGRIENAYANAEKKSLREMAEDRELEFGAEFMEIVEIDDQN 120
#
# Query: 121 SKCNSFFSYRTGKRNKTSSIFVKYQRR 147
# SKCNSFFSYRTGKRNKTSSIFVKYQRR
# Sbjct: 121 SKCNSFFSYRTGKRNKTSSIFVKYQRR 147
#
#
# >BS_gntK
# Length = 513
#
# Score = 32.0 bits (71), Expect = 0.46
# Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
#
# Query: 22 WFSKEREDILTKEQIRFLSIMKYFQRDRFDEYTIPYS 58
# W + ER++I +K + +++ I +Y + F+EY I YS
# Sbjct: 139 WITNERKEIASKAK-KYIGIKEYIFKQLFNEYVIDYS 174
#
#
# >DRA0188
# Length = 922
#
# Score = 30.0 bits (66), Expect = 1.9
# Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 6/47 (12%)
#
# Query: 55 IPYSQLPDKCKPYSESARDHHKRRIKGRIENAYANAEKKSLREMAED 101
# +P +++ + +PY+E H R+K R E A A L+ MA D
# Sbjct: 395 LPLARVSELLRPYAEEREPGHAERVKNRPEQAIA------LQRMAAD 435
#
#
# >SPy1233
# Length = 306
#
# Score = 29.6 bits (65), Expect = 2.1
# Identities = 21/59 (35%), Positives = 32/59 (53%), Gaps = 4/59 (6%)
#
# Query: 3 QESNLFFMRDSYATSHFLDWFSKEREDILTKEQIRFLSIMKYFQRDRFDEYTIPYSQLP 61
# Q++N +M D + S ++D S E + RFLSI+K +RD + Y Y+QLP
# Sbjct: 202 QQNNRLYMSDYFDFSIYIDADSSHIETWYIE---RFLSILKLAKRDPHNYYA-QYAQLP 256
#
#
# >YPO2984
# Length = 471
#
# Score = 28.9 bits (63), Expect = 3.9
# Identities = 21/71 (29%), Positives = 27/71 (37%), Gaps = 3/71 (4%)
#
# Query: 44 YFQRDRFDEYTIPYSQLPDKCKPYSESARDHHKRRIKGRIENAYANAEKKSLREMAEDRE 103
# YFQ RFD Y Q+ D Y K R++ E AN EK D +
# Sbjct: 73 YFQTKRFDRYNAVIDQMLDAGTAYRCYCS---KERLEALREAQMANGEKPRYDGHCRDSQ 129
#
# Query: 104 LEFGAEFMEIV 114
# GA+ +V
# Sbjct: 130 CTHGADEPSVV 140
#
#
# >Cgl0675
# Length = 305
#
# Score = 27.7 bits (60), Expect = 9.3
# Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
#
# Query: 81 GRIENAYANAEKKSLREMAEDRELEFGAEFMEIVEIDDQNSKCNSFFSYRTGKRNK 136
# G++E A A ++ +E DR ++ + E++ +D N F+YR G+ N+
# Sbjct: 251 GQVEQALAEIKEHGTQEGWLDR-MQHRSRLYELLRYEDYNVFDQHIFTYRKGENNE 305
#
#
# >aq_527
# Length = 254
#
# Score = 27.7 bits (60), Expect = 9.4
# Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
#
# Query: 77 RRIKGRIENAYANAEKKSLREMAEDRELEFGAEFMEIVEI 116
# RR+ G N + AE + LR++AED E GA F E E+
# Sbjct: 142 RRLDGVKVNLH--AENEGLRKIAEDYLKELGATFAEEAEL 179
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.320 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,052,854
Number of Sequences: 192987
Number of extensions: 538855
Number of successful extensions: 1420
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1416
Number of HSP's gapped (non-prelim): 22
length of query: 147
length of database: 59,019,183
effective HSP length: 99
effective length of query: 48
effective length of database: 39,913,470
effective search space: 1915846560
effective search space used: 1915846560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
S2: 60 (27.7 bits)