NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Query Tips
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
dbEST
Trace Archive

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:538855     UniGene Mm.261321     Mus musculus (mouse)   Setd6 Order cDNA clone, Links
SET domain containing 6 (Setd6)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_001030295.1 SET domain containing 6 M. musculus 100.0 472
NP_079136.1 SET domain containing 6 H. sapiens 86.2 447
NP_001085404.1 MGC82362 protein X. laevis 60.9 436
NP_955894.1 SET domain containing 6 D. rerio 57.8 434

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; intestine; spleen; thymus; extraembryonic tissue; prostate; uterus; kidney; bone marrow; liver; mixed; uncharacterized tissue; pancreas; eye; thyroid; testis; skin; lung; spinal cord; mammary gland; nasopharynx; inner ear; artery
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 8
Map position: 8 D1
UniSTS entry: Chr 8 RH125965
UniSTS entry: Chr 8 C76402
UniSTS entry: Chr 8 (n/a)
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AK075597.1 Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610039J04 product:hypothetical protein, full insert sequence P
AK215534.1 Mus musculus cDNA, clone:Y2G0135F19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034096, based on BLAT search P
AK215299.1 Mus musculus cDNA, clone:Y2G0134J12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034096, based on BLAT search P
AK181998.1 Mus musculus cDNA, clone:Y0G0120G17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034096, based on BLAT search P
AK167753.1 Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730006B20 product:hypothetical Nuclear protein SET containing protein, full insert sequence P
NM_001035123.3 Mus musculus SET domain containing 6 (Setd6), mRNA P
BC139199.1 Mus musculus SET domain containing 6, mRNA (cDNA clone MGC:170826 IMAGE:8862221), complete cds P
BC139198.1 Mus musculus SET domain containing 6, mRNA (cDNA clone MGC:170825 IMAGE:8862220), complete cds P
AK010304.1 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2400009A05 product:hypothetical protein, full insert sequence P

EST sequences (10 of 71) [Show all sequences]

BY404501.1 Clone I730050B06 thymus 3' read A
BY409788.1 Clone I730077I16 thymus 3' read A
BY453674.1 Clone K630069G07 brain 3' read PA
BY709770.1 Clone 2400009A05 embryonic tissue 5' read P
BY737621.1 Clone I730006B20 spleen 5' read P
BY757933.1 Clone I730006B20 spleen 3' read PA
CB566083.1 Clone IMAGE:30294306 embryonic tissue 5' read P
BX522769.1 Clone IMAGp998F092747_;_IMAGE:1097096 intestine P
BX525176.1 Clone IMAGp952E0740_;_IMAGE:833286 embryonic tissue PA
CF968842.1 intestine 5' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help