| 14 proteins |
M | KOG4629 | Predicted mechanosensitive ion channel |
|---|
248 letters hsa
1114 Hs18594879 (248) dme
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Hs18594879
(248 letters)
Database: kyvama
112,920 sequences; 47,500,486 total letters
Score E
Sequences producing significant alignments: (bits) Value
Hs18594879 433 e-121
7303065 33 0.54
SPBC13E7.03c 31 2.1
SPAC6B12.16 31 2.1
CE28569 30 3.5
7301769 30 4.6
Hs7656879 30 6.0
ECU01g1240 29 7.8
# >Hs18594879
# Length = 248
#
# Score = 433 bits (1114), Expect = e-121
# Identities = 218/248 (87%), Positives = 218/248 (87%)
#
# Query: 1 MALMCKDSEFIGVVITMSSKNEGIISTAPSFGTAIRLKATLTLLHPVPEVNMTLPCSTGH 60
# MALMCKDSEFIGVVITMSSKNEGIISTAPSFGTAIRLKATLTLLHPVPEVNMTLPCSTGH
# Sbjct: 1 MALMCKDSEFIGVVITMSSKNEGIISTAPSFGTAIRLKATLTLLHPVPEVNMTLPCSTGH 60
#
# Query: 61 VGCWSXXXXXXXXXXXXXXXXXXIKTMSPSGLATLDPYFFPPKQIISNPVQYIFLRPGPL 120
# VGCWS IKTMSPSGLATLDPYFFPPKQIISNPVQYIFLRPGPL
# Sbjct: 61 VGCWSLELQLPQLLPDLHPPLDPIKTMSPSGLATLDPYFFPPKQIISNPVQYIFLRPGPL 120
#
# Query: 121 QRVKCPRSDSQSRSELPSSRERDSINERTMDAXXXXXXXXXXXXSNEVRLSQNKTNPSQE 180
# QRVKCPRSDSQSRSELPSSRERDSINERTMDA SNEVRLSQNKTNPSQE
# Sbjct: 121 QRVKCPRSDSQSRSELPSSRERDSINERTMDARREKRIEKKRERSNEVRLSQNKTNPSQE 180
#
# Query: 181 TERIILVTPSESLHEAVPEAEPSSNFFPPPHWQLPHWQNIGSYKSPCSRGQKRVIVGGAV 240
# TERIILVTPSESLHEAVPEAEPSSNFFPPPHWQLPHWQNIGSYKSPCSRGQKRVIVGGAV
# Sbjct: 181 TERIILVTPSESLHEAVPEAEPSSNFFPPPHWQLPHWQNIGSYKSPCSRGQKRVIVGGAV 240
#
# Query: 241 ARKDRGDK 248
# ARKDRGDK
# Sbjct: 241 ARKDRGDK 248
#
#
# >7303065
# Length = 925
#
# Score = 33.1 bits (74), Expect = 0.54
# Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
#
# Query: 98 YFFPPKQIISNPVQYIFLRPGPLQRVKCPRSDSQSRSELPSSRERDSINE 147
# YF PP ++ P Y +P P Q+V+ P S ++ +LPS+ + N+
# Sbjct: 352 YFRPPSALVGPPPNYP--KPAPQQQVQQPHRPSITQQQLPSTSSQTIFNK 399
#
#
# >SPBC13E7.03c
# Length = 713
#
# Score = 31.2 bits (69), Expect = 2.1
# Identities = 13/57 (22%), Positives = 31/57 (53%)
#
# Query: 170 LSQNKTNPSQETERIILVTPSESLHEAVPEAEPSSNFFPPPHWQLPHWQNIGSYKSP 226
# L+ N T + +T +++ +SL ++P+++FF PH + ++ G++ +P
# Sbjct: 285 LTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSFFETPHNNIWDSRDRGAFSAP 341
#
#
# >SPAC6B12.16
# Length = 344
#
# Score = 31.2 bits (69), Expect = 2.1
# Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
#
# Query: 178 SQETERIILVTPSESLHEAVPEAEPSSNFFPPPHW---QLPHWQNIGSYKSPCSRGQKRV 234
# S E E I + + +L VPE P+S F+ P + +LPH ++ S CS + +
# Sbjct: 3 SNEIENFIYL--NNTLLSEVPE--PNSVFYTPKCFSNSKLPHQSDLEEPSSACSLSKNTI 58
#
# Query: 235 IVGGAVARKDRGD 247
# I GGA D D
# Sbjct: 59 IDGGADEPYDSSD 71
#
#
# >CE28569
# Length = 811
#
# Score = 30.4 bits (67), Expect = 3.5
# Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 21/138 (15%)
#
# Query: 97 PYFFPPKQIISNPVQYIFLRPGPLQRVKCPRSDSQSRSELPSSRERDSINERTMDAXXXX 156
# P F P + + + + P L +K P+++ + E+P+S S + + A
# Sbjct: 234 PEFVEPDPPVQDALPDEIMEPVSLTPIKKPKTEKEPEKEIPASEPVSSPKKSVIPASPKA 293
#
# Query: 157 XXXXXXXXSNEVRLSQNKTNPSQETERIILVTPSESLHEAVPEAEPSSNFFPPPHWQLPH 216
# + + Q K +TP E E + E E + PP Q P
# Sbjct: 294 ISHPSTPAKSPQKTPQKKKE----------ITPVEVKIEEIKEEEDVTPSQSPPATQTPR 343
#
# Query: 217 WQNIGSYKSPCSRGQKRV 234
# SRG+ R+
# Sbjct: 344 -----------SRGRPRI 350
#
#
# >7301769
# Length = 1084
#
# Score = 30.0 bits (66), Expect = 4.6
# Identities = 17/63 (26%), Positives = 28/63 (43%), Gaps = 2/63 (3%)
#
# Query: 186 LVTPSESLHEAVPEAEPSSNFFPPPHWQLPHWQNIGSYKSPCSRGQKRVIVGGAVARKDR 245
# +V P + P S+ + PP ++ W I + P G+KR GG ++ R
# Sbjct: 141 VVPPPPPVQAPSPTPTESTEYTPPEQFKSEFWNRIEEAQEPKPVGKKRRTPGG--LKRTR 198
#
# Query: 246 GDK 248
# G+K
# Sbjct: 199 GNK 201
#
#
# >Hs7656879
# Length = 1163
#
# Score = 29.6 bits (65), Expect = 6.0
# Identities = 27/94 (28%), Positives = 38/94 (39%), Gaps = 17/94 (18%)
#
# Query: 126 PRSDSQSRSELPSSRERDSINERTMDAXXXXXXXXXXXXSNEVRLSQNKTNPSQETERII 185
# PRS S SE PS + + D+ +E S++ ++ S+ E
# Sbjct: 403 PRSTPGSNSE-PSHHNSEGADNSRDDSSSHSGSESSSGSDSE---SESSSSDSEANE--- 455
#
# Query: 186 LVTPSESLHEAVPEAEPSSNFFPPPHWQLPHWQN 219
# PS+S A PE EP P WQL +W N
# Sbjct: 456 ---PSQS---ASPEPEPP----PTNKWQLDNWLN 479
#
#
# >ECU01g1240
# Length = 600
#
# Score = 29.3 bits (64), Expect = 7.8
# Identities = 15/54 (27%), Positives = 25/54 (45%), Gaps = 2/54 (3%)
#
# Query: 169 RLSQNKTNPSQETERI--ILVTPSESLHEAVPEAEPSSNFFPPPHWQLPHWQNI 220
# R + K P+++ +I +++TP E E +PS P H W+NI
# Sbjct: 237 RFTSEKGRPARDLHKIQKVVLTPEEKRREKTYIMDPSETMPSPGHEPSVSWENI 290
#
#
Database: kyvama
Posted date: Nov 8, 2002 2:42 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Lambda K H
0.315 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,498,524
Number of Sequences: 112920
Number of extensions: 910731
Number of successful extensions: 2302
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2298
Number of HSP's gapped (non-prelim): 9
length of query: 248
length of database: 47,500,486
effective HSP length: 106
effective length of query: 142
effective length of database: 35,530,966
effective search space: 5045397172
effective search space used: 5045397172
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
S2: 64 (29.3 bits)