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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs179392          
refSNP ID: rs179392
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:79/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
NM_000218.2:c.387-35728G>C
NM_181798.1:c.5+30486G>C
NT_009237.17:g.1300671G>C
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss10662315 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs179392 during BLAST analysis for the current build.

NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss238561KWOK|OVLP-000621-304338fwd/BC/Gtacaaatagtattataacactgtaattatgtgtgtaaactactcatatcttaagtagaag06/30/0010/10/0379Genomic94 %
ss1053764KWOK|OVLP-000804-146467fwd/BC/Gtacaaatagtattataacactgtaattatgtgtgtaaactactcatatcttaagtagaag09/02/0010/10/03117Genomic94 %
ss1655651KWOK|OVLP-000925-545633fwd/BC/Gtacaaatagtattataacactgtaattatgtgtgtaaactactcatatcttaagtagaag10/05/0010/10/03126Genomic94 %
ss3869980SC_JCM|AJ006343.1_1107fwd/BC/Gtacaaatagtattataacactgtaattatgtgtgtaaactactcatatcttaagtagaag09/25/0110/10/03126Genomicunknown
ss10662315BCM_SSAHASNP|chr11.NT_028310.10_1273853fwd/BC/Gtacaaatagtattataacactgtaattatgtgtgtaaactactcatatcttaagtagaag06/29/0310/10/03123Genomicunknown
ss12134141WI_SSAHASNP|chr11.NT_028310.10_1273853fwd/BC/Gtacaaatagtattataacactgtaattatgtgtgtaaactactcatatcttaagtagaag07/04/0310/10/03123Genomicunknown
ss19913767CSHL-HAPMAP|CSHL-HuFF-200402.chr11.NT_009237.16_1277370fwd/BC/Gtacaaatagtattataacactgtaattatgtgtgtaaactactcatatattaagtagaag02/21/0403/04/04120Genomicunknown
ss39980088ABI|hCV26650442fwd/C/Gtacaaatagtattataacactgtaattatgtgtgtaaactactcatatcttaagtagaag07/16/0507/16/05126Genomicunknown
ss83761753HGSV|Cor19240_SNV_20070510.chr11_2470006fwd/C/Gtacaaatagtattataacactgtaattatgtgtgtaaactactcatatattaagtagaag11/30/0712/05/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs179392|allelePos=9258|totalLen=24131|taxid=9606|snpclass=1|alleles='C/G'|mol=Genomic|build=130
 TAATGCATGG TGCGTGTCTC TTAGCAGTAA GACCTTGAGA AGGAGCCAGG CAGGGAGGAA
 TGGGAGGGTG AAGGAGTGCC TTTTGTGGAG GGGAGTCGGA CACAGATGGG ATTTCAGCAG
 AGACCTGATG GAATTGAGGG AGTGGGTGGT GTGTGCTTCT GCAGGAAGAG CACCCAGACA
 GAGGGCATGG CACATGCAAA GGTCCTGTGT TGGGAACGTG CTTGGTGCAT GTGAAGAACT
 GTGCAGGGAA GGTGCTGGAG ATAGGACGGG AGGGCCACGA GGGTTAAGAT CCTGAGAGCA
 ATGCGGGGGG TGTGAGTGAT GAGGGACAAC ATCAGTCCTC TCTTGGCTTC TGTACtttaa
 aaaaatcatt ttgttttgaa gcaattttag acctacagaa aagttccacg acagtactga
 gagttcctgt ggactcctag tattaacatc ttaataacgg ggtgtattga ccaaaaccga
 cacctgatac attaccgtga actcaactgc agatctgatt caaatcccgc gtttttctag
 catccggttt ctgttctgtg atccccacgt tgctttcagc tgccaggtct cctttcgtgt
 cctgcagcct gtgccagctc ctcagtctct ctttgtcttt cgtgaccttg atgttttaga
 taagtactgg gcggctgttt tgtagaacgt ccctcggttt ggattctctg atatgctctc
 atgattagat caagattgtg catttttggc aagaacaccg cgggagtgtt gttgggtccc
 gaggagtccc tgtggcaggg ctgtgtgagg tcagcatgtc ttagggcggg ttcatttgac
 cttgaccact caggtaggag tgtgtcagct gggcttctca gctgtaaatt aaccattttc
 cgcttcataa ttagtaaaca ccttgaggaa gctacattga gacattgcag ctgccttttt
 tctcctgaga ttttgccccg ctgattttag tgcccatcag ctggttttgc ttgtgacagg
 caaagtctgt ggtgcttgcc aaatggggat ttgtttattt cccactttct ttctatgttt
 gttaatttgg attcttctcc aggaagagct gtcccctttg ttctggttat gtatccagtg
 gcttatgtat atcagcatgg tttcatagat acttcttttg tgttatgggc tataagccaa
 tgctattatt atttattttc ctccatttat ttatttattt agagacggag ttttactctt
 gcacaggctg gagtgcagtg gcatgatctc ggctcactga aacctctgcc tccggggttc
 aagtgattct cctgcctcag cctcctgagt agctgggatt acaggcacgt accaccacgc
 ccaactaata ttttgtattt ttagtggaga cggggtttca tcatgttggc caggctggtc
 ttgaactcct aacctcaggt gatccacccg ccttggcctc ccaaagtgca gggattacag
 gtgtgagcca ctgcacccag cctcattatt tattttcatt gctcaaattg tgctggcttt
 tgccccagaa acaaccttcc attcagcttc catgcccctt tggtgggccc tgtcttttct
 tggacactgc cttcctggca ccccaagatg ctctgggctc agcttgtatt tccttgcctc
 agtcttgaaa tcacccactt ctccaaggag ccagggttcc ttccattgga gagtggtctt
 tagaaaccca ggcctgggtg catggtgtgc tcatcgccac tgtggacctg ctgctctgcg
 cccactcggc cgacggagct ggggaatatg tgtatggcac ccccacgtct acgcttctgt
 gttcatctgc agatatattc atacatgagt gggctcatac tgtctccaac tccagttctg
 ccccagtggg gccaattctc tctctttgtt gtaacacctt tcttcaatag tgagaaacct
 ggctctctca ccttcacctg ctcgtccaac cccagctgca agggaactgg ctccatactt
 gctgatgcgt gcccccatga gaagtgactg accacccaga gcctggcgcc tgtgcatggc
 gtctgtgcac ggcgcgtctt gtcttcagcc tcactgcgtc ccatcagtgc ttttccccac
 ggtgactttg agtatttctt tacttctgta ctcccttcag tgtgattatg tcattcatct
 gtgacatgtt tagatttatc tgttaggttg gtattccatt ttgggtgtcc cccgattctg
 attgttttta gttacttatc tgggggtctg tgtgaaggga atgtaaagct gctgtgactc
 ctggagtcag aggtgcacaa agagtgtcct cagaggagag ccaggcgccc accctgccag
 cccttccctc cccactccat cccccacccc cccaccctgg acaaaaccag ctcttcagcc
 tttcatgtct ctcttgcagg cctctcgcac agatgagaaa atacacgtgt gttttcctgt
 atcccctctt tcttacaaaa agggaagcac actatcaata ctcttgtaga tctttaattg
 cggtaagata cactaatgca aaatttacca ttttaactat ttttaagcac acagttcagt
 ggcatgaagt acattgattt tgttatgcaa ccatcaccac catccatttc tagaattttc
 tcatcctccc aaactgaaac tccatcccca ttaaacacca actcccccat tctctcttcc
 ccagcccctg gcacctacca tttacctttc gtccctatgg atttgactaa tccaggaact
 tcataaaagt gggatcattg agtactctat ttgtcttttg tgactggctt atttcacttg
 ggcataatgt cctgaaagtt cactcatgct gtagcatgtg tcagaatttc cttttccttt
 tcaaggctga ataatattcc actgtatgga tagaccacat tttgcttatc cattcatctt
 ttgatgaaca tttgggttgc ctccatgttt tagctattgt gaataatgct actatgaata
 tgggtgtaca aatatctttt caacgccctg ctttcaattc ttttgggtat atacccagaa
 gtggaatttc tggattatat ggtaattata gttttaattt cttgaggaac cactatgccg
 ttttccacag tagctaccac atcctcacca acacttgtaa tttctggggt tttttaatag
 tagccattct agtgggtgtg cagtggtatc tcattatagt tttgatttac attttcttat
 gagtagtgat gttgagtatc ttttcatgct cttattagcc atttgtatat cttctttgga
 gaatatctcc tcagctcttt tgcccacttc attaaattga gaggtttgtt tttgctgttg
 agttttagaa cttctctata tattctggat attaatccct tatcagatat aggatttgca
 aatattttct ctcattctgt ggggtgcctt tttactccgt tgatagtgtc tttgtacaaa
 aatttttaat gttcacgaag tccaagttgt ctactttttg ttttgttgcc tgtgcctttg
 gtctttgtgt tagtccattt agcattgcta taaaggaata cctgaggctg gtaatttata
 aagaaaagag gtttaattgg cttatggttc tgcaggctgt acaagaaaca tggtgccagc
 acctgcttct ggcgagagcc tcaggaagct tccaatcacg gcagaaggtg aagcgggagt
 aggtgtctca tatgatgaga cagggagcaa gagaaaggag gttccagtct ccttttaaca
 accagatctt gcatgaactc attacctaat catggggaat ctgcccctat gacccaaaca
 gcacccacca ggccccacct ccaacgctgg ggatcacatt tcaacatgag agttggaggg
 gacaaatatc tgaactctat caatgttata tccaagaaat catagccaaa tccaatgtca
 tgaagctttt gccctatgtt ttcttctaag atttttatag ttttacgttg cacatttaga
 tatttgatcc attttgagtt aatttttgta tatggtgtga agtaagggtc cagcttccct
 cttgcatgtg gatttccagt tttcccagca ccatttgttg aaaagacagt ccttttctca
 ttgaatagtc ttggaaccct agtcaaaaat catttaacca tttatgccac ggtttatttc
 tgggctgtct catgttccat tggtttatat gtctgtcttt ttgcctgtgt cacactgtct
 tgattactgt aagtttatag taaagttttg aaatcagaaa gtgttaggct tccagcttgg
 cttttctttt tcaatattgc ttttggctat tttaagttcc ttgagattcc atatgaattt
 taggatgggt ttttctattt ttgcaaaaag tgtcattggg attttgagag ggattgcact
 gaatctataa atcactttgg gtagtattga tatctcaaca ttgtcttcta atccatgaac
 atgggatatg tttccattta tttgcatctt tttaagtttc tttcagtaat gttttgtggg
 ttttgctgca gaagtctttt acctccttgg ttaagttaat tcctaagtat tctacttgat
 gctattataa attaaattgt tttcttaatt tcatttttag attgttcatt gttagcatat
 agaaatgcaa ctgattttgc atgtttacct tagattctgt aactttgctg acttcattta
 ttagctctaa taagtttttg tggaatcttt aggggtttct acatatgaga ttatgttatc
 tgtgaataga aatagtttta cgtctttttt ttccattctg gatgcctttt atttctttta
 atttttttct tgccaaattg ctctggctag aattttcagt acaatgttga atagaagtgg
 tgaaagtggt caccctggcc ttattcctga ccttagaggg aaaaatttca gtctcatcat
 tatgatgtta gctgtggatt ttcacatatg gtttttatta tgttaaggta gtttccttct
 attcctagtt tgttgagagt ttttaataag gatgttgaat tttgtcaaat gctttttgta
 tcaattgaga tcatgtgatc atgtgagtgt tatttcttca ttctgttaat atgctctttt
 acatggattt atttttgtat gttgaaccat ccttgcattc caggactaaa tctcacatgg
 tcatgatatg taatacttta actatgtttc tgaactcagt ttgctatttt gttgagaatt
 ttgcatcagt tttcataagg gatattggtc tgtagttttc ttgtagtctt tgtctggctt
 tagtatcaga gtaatgctct cctcatagaa tgagttagaa acctttcccc tcctctttaa
 ttttttggga aagattgaga aggatgggag tttattcttt aaatatttgg taggattcat
 tggggaagcc atcaggtcca ggcttttctt tgttgagagt tttttgatta ctgattcaat
 ctcctcacta gttataggtc catgaagatt ttgtatttct ttgtgattta gttttggtag
 gtttcgtgtt tctcagaatt tgtccatttc atctaggtta tccaatttgt tgatacacaa
 ttgttcacaa tactctctta taatcctttt tatttctgta gaattgatag tcatgtccct
 attttcactt ctgatttcag tagtcttctc tcttttttac ttagtccatc tagctaaagg
 tttgtcaatt cttaaaatct tttcagagaa gcaactttga tttaattgat ttttctctat
 tgtttttcta ttctctattt tgttggtctc tgctgtggta tttattatct tctttcttct
 gctagctttg ggtttagttc ttttgctagt tccttaagtg gtaaagttag gttatttact
 ggagatcttt cttgtttatt aatgtaacaa tttataggga gggagtggag caagatggcc
 aaatagaagc ctccaattgt cctccccaac aggaacacca aatttgagaa ctatctacac
 aaaaaagcac cttcataaga accaaaattc agataagcaa tcacagtatc tgcttttaac
 tttatattgc tggaagaggc actgaagagg gcaagagaga cagtactgaa tcactgacag
 cactgtgcct cccatccccc agctatgtgg catggagaga gaatctgaga gcttggggga
 gggaaagtgc agtgctttgg gactgtccat cgagctcagt gattccctgt tgccacagaa
 agcagaacca ggctaaattc agcccacacc cagcacagag ggagcattta aaccagccct
 agccagaggg gaatcacata tctcaggggt cagaaactga gttccagaaa accttgccac
 cacgggctaa agtgctctgg ggttctaaat aaacttgtaa ggcagtctag gccacaataa
 ctgcaattcc taggcaagtc ctattgctga gatgggctca gagccagtgg atgtgggggg
 cacacaacct agtgagacac cagccagggt ggctaacccc aggcagcaca gctcacagaa
 acaaaagtga ctcttttcct ctgcttaaag agaggagatg gagcagtaaa gagaacattg
 tcttgcatct tggataccag ctcaaccaca gtaggagagg acactgggca gagtcaatgg
 gcacacattt caggccctgg ctcttggaca tttccagaca caccctgggc cagaagggaa
 tccactgcct tggagggaag gacctagtct tgtcagaatt catcatcagc tgactaaaga
 gcccttggac cctgaacaac cagcagtgcc aggtagtatc ctgtgggcct tgaatgagat
 tctgaaatat actggcttca ggtaccagct tgaccacagt ggggtagagc accaaatggg
 ctcttggggt ccctgattcc aggccttggc tcttggacag catttctgga cctgctctag
 gccagaaggg agcccactga cctgaaaggt gagtccacag cctagaagcc ttcaccacaa
 gctgactgaa gagccctcag gccttcagtg gacaaccatg gtagcctgac agtactgcct
 atgggcctgt agtggtggtg gccacaggga gaggctcctt tgcctatgga aaggagaagg
 aattctgggt atgactttgt cttgtgctac tactgagtgc cagcttagcc tctgtagtat
 accacaccag gtaggtttct aaggtctttg actacagacc cttgctcctg gatggcatct
 ctggacccac cttggacttg ggggaactca ccaccctaaa gtgaaggaca aaagcctggc
 tggctttacc atttgctaat tgtagagccc tggggctttg agtgaacata ggtggtagcc
 aggtagtgct tacagcgggc cttgggtgaa acccagtgat gtgttggctt caggtctgac
 cagcacagtc ccagtggtgg tggccacagg taagcttgtg tcactcctcc ccaagcttca
 ggtggcttag catagagaga gagtccattt ctttgggaga aagtaagaga agaaaacaag
 agtctctgcc tcgtaatgca gagaattctt ctggatctta tctaagacca ccaaggcagt
 atttttttta atatttattt tttgaaacag agtttcactc ttgttgccaa ggctagagcg
 caatggtgtg atctcagctc accgcaacct ctgtctcccg ggtttaagcg attctcctgc
 ctcagtctcc tgagtagcta ggattatagg catgtgccat catgcctggc taatttttgt
 ttgtttgttt gtttgtttgt tttagtagag acagggtttc tccatgttgg tcaggctggt
 cttgaactcc cgacctcagg tgatctgccc gcctcggcct cccaaagtgc tgggattaca
 ggcgtgagcc actgcgcctg gccccaaggc agtattttta tgagtctgca agaaccacag
 tgttactggg cttgggatgc tgcctaatgc agatacggct tagatcacaa cacccaagtc
 cctttgaata cctggaaagc tttaccaaga aagatgggta caaacaagcc cagactgcaa
 aggctacaat aaatacctaa ctctttaatg cctagacacc aatgaacaag accatctagg
 aaaacatgac ctgaccaaac aaactaaata aagcatcagg gaccaatcct gaagaaaaga
 gatatgtgac ctttcagaga gagaatttga aatagctgtt atgagaaaac ttcaaattca
 agataacaca gcgacggaat tcagaattct atcagataat ttcataccga gattaaaata
 agaatcaagc agaaattctg gagttgaaaa atgcagctga catattgaag aatgtatcag
 aatctcttga taacagcatt gatcaagaac aaaaaagaat tagtaagctt gaagacagga
 tatttgtaaa tacacagagg agacagaata agaacgaatg aagcatgatc tagaaaatag
 cctcaaaagg gcaaatctaa gatttattga ccttaaagag gaggtagaga aagagatagg
 ggtagaaagc ttattcaaag ggatactaac atagaacttc ccaaacctag agaaagatac
 caatattcaa atacaagaag attctagaat accaagcaga tttaacccaa agaagactac
 ctcaaggtat ttaatagtca aagttccaaa ggtcaaggat aaagaaagga tcctaaaagc
 agcaagaaaa aaaagactta taattgaact ccattatatc tggcagcaga gttttcaatg
 gaaactttat gggccagaag agagtggcag gacatattta aggtgctgaa ggaaaaaaaa
 gaaaaaaact tttgctctag aatagtatat ctggtgaaaa tatccttcca acatgaagga
 gaaatacaga ccttcccaga caaacaaaag ctgaggatgt catcaacacc agagctgtct
 tacaagaaat gctaaaggga attcttcaat ctgaaagaaa agggtgttaa taagcaacaa
 gaaatgatgt gaaggtacaa aactcattgg taatacatac acagaaatac aaatagtatt
 ataacactgt aattatg
 S
 tgtgtaaact actcatatct taagtagaag gatgaaaaga agaactgata aataatgact
 acaacaactt ttgtggtaca ataggcagta caataagata tagagacaaa aaaacttaaa
 aagcggagag acaaaagttg aagtgtagag attttttgtt ttactttaag ttctggaata
 cgtgtgctga acgtgcaggt ttgttacata cgtatacagt gccatggtgg tttgctgcac
 ctatcaaccc atcatctagg ttttaagccc tacatgcatt aggtatttgt cctaatgctc
 tccctcccct tggcccccat ctccccacag atcccggtgt gtgatgttcc cctccctgtg
 tccgtgtatt ctcattgttc aacttccact tatgagtgag aacatatggt gtttggtttt
 ctgttcctgt gttagtttgc cgagaatggt ttccagcttc atccccacaa aagacatgaa
 ctcattcttt ttttatggct gcatattatt ccatggtgta tatgtgccac attttcttta
 tccagcctat cattgatggg catttgggtt ggttccaagt ctttgctatt gtaaatagtg
 gtgcagtaaa catatgtgtg catgtgtctt tatagtagaa tgatttataa tcctttgggt
 atatacccag taatgggatt gctgggtcaa atggtatttc tagttctaga atctagttct
 agaatcacca cgctgtcttc cacaatggtt gaactaattt acactcccac caacagtgta
 aaagcgttcc tatttctcca catcctctcc agcatctgtt gtttcctgat tttttagtga
 tcgccattct aactggcatg agatggtatc tccttgtggt tttgatttgc atttctctga
 tgaccagtaa tgattagctt ttttttccat atgtttcttg gccacataaa tgtcttcttt
 tgagaagtat ctgttcgtat cctttaccca ctttttgatg gggttgtttt tttcttgtaa
 atttaagttc cttgtagatt ttggatatta gaccttgtca gatggataga ttgcaaatat
 tttctcccat tctgtaggtt gcctattcac tctgatgcta gcttctttta ctgtgcagaa
 gctctttagt ttaattagat cccatttgtc aattttggct tttgttgcaa ttgctcttgg
 tgttttagtc atgaagtcct tgcccatgcc tatgtcctga atggtattgc ctgggtattc
 ttctagggtt tccgtggttt taggttttac atttaagtct ttaatcatct tgagttaatt
 tttatataag ttgtaaggaa ggggtccagt tactgttttc tgcatatgac tagccagttt
 tcccagcacc atttattaaa tagagaatcc tttccgcatt gcttttttgt caggttggtc
 aaagatcaga tgattttagg tgagtggtgt tatttctgag gtctctgttc tgttccattg
 gtttatatat ctgtcttcat accagtacca tgctgttttc gttactatag ccttgtagta
 tagtttgaag tcaggtagtg tgatgcctcc agctttgttc tttttactta ggattgtctt
 ggctatatgg gctctttttt ggttccatat gaaatttaaa gtagtttttt ctaattctgt
 gaagaaagtc aatgatagct tgatgggaat agcattgaat ctataaatta ctttgggcag
 tatggccatt ttcatgatac tgattattcc tatccatgag catggaattt ttttccattt
 gtttgtgtcc tttcctttcc ttcagcagtg gtttgttgtt ctccttgaag aggtccttca
 catcccttgt aagttgtatt cctaggtatt ttcttctctt tgtagcaatt atgaatgggg
 attcactcat gatttggctc tctgcttgtc tatttttggt gtataggaat gcttgtgaat
 tttgcacatt gattttgtat cccaagactt tgctgaagtt ggctatcagc ttaaggagtt
 tttgggctga gacaatgggg ttttctaaat atacaatcat gtcatctgca aacagagaaa
 atttgacttc ctcttttcct atttgaatac tctttatttt ttcgcttgcc ttattgtcct
 ggccagaact tccaatacta tgttgaatgg gagtggtgag agagggcatc cttgtcttgt
 gctggttttc aaagtgaatg cttccagctt ttgcccgttc agtatgatat tgcctgtggg
 tttgtcataa gtagctcttg ttattttgag atatgttcca tcaattccta gtttattgag
 agtttttggc atgaagggat gttgaatttt atcgaaggct ttttctgcat ctattgagat
 aatcatgtgg tttttgtcat tggttctgtt tatgtgatgt ttagtgattt acatatgttg
 aatcagcctt gcatcccagg gatgaagccc acttgatcac catggataag ctttttgatg
 tgctgctgga ttcagtttgc cagtatttta ttgaagattt ttgcatcggt gctcatcagg
 gatattggcc tgaagttttc tttttttgtg tgtcgctgcc aaattttggt atcaggatga
 tgctggcctc ataaaatgag ttagggaggg tccctctttt tctactgttt ggaatagttt
 cagaaggaat ggtaccagct cctctttgtg cctctggtag aatttgggtg tgaatccgtc
 tggtcctggg ctttttttgg ttggcaggct attaattact gcctcaattt cagaacttgt
 tgttggtcta ttcagggatt cgactttttc ctggtttagt cttggagggt gtatgtgtcc
 aggaatttat ccattttttc tagattttct agtttatttg catggaggtg tttttagtat
 tctctgatgg tagtttgtat ttctgtggga tcagtggtga tatccccttt atcatttttt
 attgcatcta tttgattctt ctctcttttc ttctttgtta gtctggctgg cagtctattt
 tgttaatctt ttcaaaaaac cagctcctgg attcattgat ttttttggaa gggtttttca
 tgtctctatc tccttcagtt ctgctctgat cttagttatt tcttgtcttc tgctagcttt
 tgaatttgtt tgctcttgct tctctagttc ttttaattgt gatgtttggg tgtcgatttc
 agatctctct agctttctga tatgggcatt tagtgctata aatttgcctc taaacactgc
 tttagctgtg tcccagaaat tctggtacgt tgtctctttg ttttcatttg tttcaaagaa
 tttctttatt tctgccttga ttttgttatt tactcagtag tcattcagta gcaggttgtt
 caatttccat gtatctgtgt ggtttttagt gagtttcttc atcctgagtt ctaatttgat
 cgtactgtgt tctgagagac tgtttgttat gatttccatt ctttggcatt tgctgaggag
 tgttatactt ccagttatgt ggtcaatttt agaataagtg ctatgtgatg ctgagaacaa
 tgtacattct cttgatttgg ggtggaaagt tctgtagatg tctattaggt ccgcttggtc
 cagagctgag ttcaagtcct gaatatcctt gttaattttc tgtctcattg atctgtctaa
 tattgacagt ggagtgttaa agtctcgcac tgttattgag taggaatata agtctctttg
 taggtctcta agaacttgtt ttatgaatct aggtgctcct gtattgggtg catttattta
 ggatagttag ctcttcttgt tgcattgatc cctttaccat tatgtaatgc tcttctttgt
 ctttttttat ctttcttagt ttgaagtctg ttttatcaaa ggctaggatc ttggccgggt
 gcagtggctc atgcctgtaa tcccagcact ttgggaggct gaggtggttg gatcacgaga
 tcaggagatc gagaccatcc tggctaacac gatgaaaccc catctctact aaaaatacaa
 aaaaattagt caggcatggt ggcgggcacc tgtagtccca gctactcggc aggctgaggc
 aggagaatgg cgtgaacccg ggaggtggag cttgcagcga gccaagaaag cgccactgca
 gtctggcctg ggcaaaagag tgagactcca tctcaggaaa aataaaaaat aaaaaattaa
 attaaaaaaa atggctagga tcacaacccc tgcttttttt tttttttttt tttttttttt
 tgctttccat tgcttggtaa atattcctcc atccctttat tttgagcata tgtgtgtctt
 tgcacatgag atggatctcc tgaataaagc acactgatgg gccttaactc tttatccagt
 ttgccagtct gtgtctttta attggggcat ttagcccatt tacatttaac gttaacattg
 ttatgtgtga atttggtcct gtcgtcatga tgctagctgg ttattctgca cattagttga
 tgcagtttct tcatagtgtc attggtcatt attttggtgt ggttttgcag tggctgatac
 tgctttttcc tttccatgtt tagtgcttcc ttcaggagct cttgtaaggc aagcctggtg
 gtgtcaaaat ccctcagcat ttgcttgttt ggaaaggatt ttatttatcc tttactcatg
 aagcttagtt tggctggata tgaaattctg cttgaaaatt cttttcttta tgaatgttga
 atattggctc ccactctctt ctggcttgta gggtttctgc agagagattt gctgttagtc
 tgatgcactt ctctttgtag gtaacctgac ctttctctct ggctgccctt aacgttttgt
 ccttcattta aaccttggag aatctgacaa ttatatgtct tggggttgct cttcttgagg
 agtatcttag tggtgttctc tgtatttcct gaatttgaat gctagcctgt cttgctaggt
 tggggaagtt ctcctggata atatcctgaa gtgtgttttc caacttggtt ccattctccc
 cgtcactttc aggtacagca atcaattgta ggtttggtct tttcatatag tcccatattt
 cttggaggtt ttgttcgttc tttttcatca ttttttctct aatcttgtct gcatgcctta
 tttcgttaag ttgatcttca atctctgata tcctttcttc cacttgattc attcggctat
 tgatacttgt gtatgcatca caaagttctc atgctgtgtt tttcagctcc atgaggtcat
 ttatgttcct ctctaaactg gttattctag ttagcagttc ctgtaacctt ttatcaggtt
 cttagcttcc ttgcattggg ttagaacatg cttctctagc tcagaggaat ttgttattac
 ccaccttctg aagcctactt ctgtcaattc gtcagtctca ttctccgtcc agttttgtgc
 ccttgctgga gaggagatgt gatcatttgg aggagaagag gcattctggt ttttagaatg
 ttcagcattt ttgtgctggt ttttcctcat ctttgtggat ttatctgcct ttgctctttg
 aggctgatga cctttggatg gggtttttgt gtggggggtc ccttttgttg atgttgattt
 tgttgctttc tgtttgctag cttttcttct aagagtcaag cctgcagtcc tgcaggtctg
 ctgcagtttg ctggaggtcc actccagacc ctgtttgcct gggtatcacc agtggaggct
 gcagaacagc aaagattgct gcctactcct tcctctggaa gctttgtccc agaagggcac
 cagcctgatg ccaaccagag ctctcctgtt tgaggtgtct gttgacccct gttgggaggt
 cttgcctgct caggaggcat ggggctcagg gacccacttg aggaggcagt ctgtccctta
 gcagagctca tgcactgtgc tgcgagaatc ccccttgtca ggatcagctg ctctcttcag
 agccagcagg caggagagtt caagtctgct gaagctgtgc ccacagccac cccttctcca
 ggtgctctgt cccagggaaa tgggagtttt atctataatc ccctgactgg ggctgctgcc
 tttctttcag agatgccctg cccagtgagg aggaatctag agaagcagtc tggcctcagc
 tgctttgctg tgctttggtg aattctgccc agtccaagcc tcccagcctc cttagcacta
 tcaggggaaa accgcctact aaagcctcag taataccaaa tgcccctccc gccaccaagc
 ttgagcatcc caggtcaact tcagactgct gtgctggcag tgagaatttg aagccagtgg
 ttcttagctt gctgggctcc atgggagtgg gacccactga gtgagaccac ttggcttcct
 ggcctcagcc ccctttccag gggagtaaat gattctgtct tgctggggtt ccaggcacca
 ctggggtaca gaaaaaactc ctgcagctag ttcaatgtct gtccaaacag caactcagtt
 ttgtgcttga aacccagggc cctggtggta taggcacatg aaggagtctc ctgatctgca
 gattgcaaaa cccatgggaa aagcatagta tccaggccgg gtatcacagt cccgggtatc
 acagatgacg ggttgatggg tgcagcaact gcatgcaaac tgcatgtttg cagttccctc
 ggctggggga gggaggtctc ccggctcctt gcacttccca ggtgaggcga tgccccacct
 gcttctgtgt gccctccgtg ggctgcaccc actgcctaat cagtcccaat gagatgaact
 tggtacctca gtcagaaatg cagaaatcac ccagtgttga tctcactgac agctacagac
 tggagctctt cctattctgc catcttgcca gATGtaaagt gtagaatttt tgattttgtt
 tttttgcttg tttatgcaat tagtgttaag tcatcatcag tttaaaataa tgagttgtaa
 gatattttca agcctcatgg taacctcaga tctaaaacat atggcagaca cacaaataaa
 aagcaagaaa ttaaagcatg ccactagaga aaatcacctt cactaaaagg aagacagaag
 ggaagtaaca aaggaagaga atatcttcac cagaaaacaa ataataaaat ggcaagagtg
 agtccttacg tatcaataat aatattaaat gtaaatgggc taaccttgcc aatcaaaaga
 cagagtggtt gaatggaccc ccgcccccac aaaaaaagac ccaattatct gttgcttaca
 agaaacacat ttcaacctat aaaaatacac atagactgaa aattaagggc ttgaaaaaag
 atattccgtg ccaatagaaa ccagaaaaga tcaggagtag ctatacttgt attaggcaaa
 gtagagttca agataataac tataagaaga gacaaagaag gtcattacat catgataaag
 ggatcaattc agcaagacga tataacaatt tcaaagaaac atctaactta atctgcactg
 tagaccaaat atacctaata gatatttaca ggacatttca tccagcaatt ccaagagaag
 aatacacatt ctcctcagca catagctcat tctcaaggat agaccatatg ttagatcaca
 aaacaagtct tgaaacattc taaaaaattg aaatactatc aagcatcttc tctgaccagt
 acagaataaa actagaagtt aataatgaga cattttggaa actatacaga catacacata
 gtaattaaac aatatgctcc tgaatgacca gagggtcaag gaagaaatta agaaggaaat
 tgaaaatttt attgaaataa attacaatgg aaacacaaca taccaaaacc tgtgggattt
 gtttgtgtct tttttacttc cttgagcagt ggtttgtagt tctccttgaa gatatgaaca
 gacacttctc aaaaaaaaga catttatgca gccaaaaaac atatgaaaat gtgctcatca
 tcactggtca ttagagaaat gcaaatcaaa accacaatga gataccatct cacaccagtt
 agaatggcga tcattaaaaa atcaggaaac aacagatgct ggagaggatg tggagaaata
 ggaacgcttt tacactgttg gtgggagtgt aaattagttc aaccattgtg gaagacagtg
 tggcaattcc tcaaggatct agaacccaaa taccatttga cccagtgatc ccattactgg
 gtatataccc aaaggattat aaatcattgt attataaaga cacatgcaca catatgttta
 ttgcaccact attcacaata gcaaagactt ggaaccaacc caaatgccca tcaatgatag
 gctggataaa gaaaatgtgg cacatataca ctgtgaagta ctatgcagcc ataaaaaaag
 atgagtttat gttcttttca gggacacgga tgaagctgga aaccatcatt ctcagcaaac
 taacacaaga acagaaaacc aaacaccaca tgttctcact cataagcggg agttgaacaa
 ggagaacaca tggacacagg gaggggaaca tcacacaccg gggtctgttg gggggtgggg
 ggcaagggga gggagggaat taggagaaat acctaatgta gatgacgggt tgatgggtgc
 agcaaaccac catggcacgt gtatgcctat gtaacaaaac tgcatgttct gcacatgtac
 cccagaactt ataaaaatcc tgtgggatac agcaaaagca gtattaagag ggaagtttct
 agttaaaagc acctgcatca ataaagagaa aaacttcaag taaacaacct aatgatctta
 aagaacaaga aaagcaagag taagtcaacc taaaattagt agaagaaata ataaagctta
 gagcagaaat acatgaaatt gaagtgaaga aaacaagaca aaagatcaac aaaataaaaa
 gttggttttt ttttttaaaa gataaaattg acaaaccttt agccagacta agaaaagaag
 agggaagatc caagtaacta aagtcagaga caaaaaagga gacattacaa ctgataccac
 agaaattcaa aggataatta gtggctgcta tgagcaactc tatgccaata aattggaaaa
 tctggaagaa atggatacat tcctagacat gtgcaaccta ccaagattga accaggaaga
 aatgcaaacc tgaacagacc actaagcagt aatgagattg aacctgtaat ttaaaaatct
 tccaacaaag aaaaccctga gacttgatgg cctcactgct aaattctgcc aaagatttca
 agaactaata ctaatccttc tgaaactatt atgaaaaata gaggaggagg gaatacctcc
 aaactcatct acaaggcccg tattaccctg ttaccaaaac cagacaaaga tacatcaaaa
 aaaaaaaaaa aaaaaggaac cacgggccaa tatccctgat aaatattgat gcaaaaatcc
 tcaacaaaat actagcaaag caaattcagc aacaccttaa aaaagatcac tcttcatgac
 caagtgggag ttatcccagg aatgcaagga tagttcaaca tatgcaaatc actttatgtg
 atacatcgta tcaacagaat gaaggacaaa accacatgag catttcaatt gatgctgaaa
 aagcacttga taaaattcca catcccttca acataaaaac tgtcaaaaac ctaggtatag
 aaggaacata cctcaacata ataaaagcca tatatgacag acccacagct agtaacatac
 tgaatgggga aaaactgaag gcctttcctc taagacctgg aacatgacaa agatgcccac
 tttcatcact gttatttaac acagtagtgg aaatcctagc tagagcaatc agacaagaga
 agaaaataaa gggcatccaa gttggaaaga aagaagtcaa attatccttg tttgcagatg
 atgtggtctt atatttggaa aaatctaaag accccacaaa aaaactatta gaactgataa
 attcagtaaa gttgcaggat acaaagtcaa catacaaaaa tcagtagcat ttctatatgc
 caacagtgaa caatctgaaa aacaaatcaa gaaagtaatc ccatttaaaa tagctacaaa
 taaaatacct aggaataaac ttaaccaaag aagtgagaga tctctacaat gaaaattata
 atacactgat gcaagaaatt gaagaggacc caaaaatggt aagatatttc atgttcatgg
 actggaagaa tcaatattgt taaaatgtct gtattgtcta aagcaatcta cagattcagt
 gcacccccta tcacaatacc aatgacattc ttcacagaaa tagtaaaaac actcctcaaa
 cttatatgga atcactaaag tcccagaata gtcaaagcta tcctgagcaa aagaacaaaa
 ctggagggag cacattacct gagttcaaat tatactacag agtcatagta accaaaacag
 tatgtactga cataaaaaca gacacgtaga ccaatggaac agaatagaaa acccagcaaa
 caaatccata tgtctacgac aaactcattt ttgacaaagg tgccaagaac atgcattggg
 aaatggacag tctcttcaat aaacgatgct gggaaaactg gatgtccata tgcagaagaa
 tgaaactaga cccctatctc tcaccatata aaaaaaacaa atcaaagtga attcaagaat
 taaatctaag acttcaaact atgaaactac taaaaagaca ttggagaaac tctccaggac
 attggagtgg gcaaagactg cttgagtaat ccctacaagc acaggcaacc gaagcaaaaa
 tggacaaatg ggatcacatc aagttaaaaa gcttctgcac agcaaaggaa acaatgagac
 agcctgcaga atgggagaaa atatttgcaa agtgcccatc tgacaaggga ctaataacca
 gaatatgtaa ggagctcaaa caaccgcaca aggaaaacat ctaataatcc aattaaaaga
 tgggcaaaag acctgaatag acatttctcg aaagaagaca aatggatgaa actggaaacc
 atcattctca gcaaactatc gcaaggacag aaaaccaaac accgcatgtt ctcactcata
 ggtgggaact gaacaatgag aacacatgga cacaggaagg ggaacatcac acactgggga
 ctgttgtggg gttgggggga ggggggaggg atagcattag gagatatacg taatgctaaa
 tgacgagtta atgggtgcag cacaccaaca tggcacatgt atacatatgt aacaaacctg
 cacattgtgc acatgtaccc taaaacttaa agtataataa taataaaaaa acaaatgaca
 aataaataaa tgaaaatgta ctcaacgtca ctgatcatca aaaaaatgca aatgaaaact
 ataatgagat atgaccccac cctggtcaat atagctttta tccaaaagat aggcaataat
 ggatgctagt gaggatgtgg aaaaaaggga atccttgtac actgttggtg ggaatgtaag
 ttactacaac caccgtggag gacagtttcg aggttcctca aaactaaaaa tagagctacc
 tctgatccag cagtcccact ctagttatat atccagaaga aagaaaatca gtccagcaga
 gaaggatccg cactcctgtg tttattgcag cactattcac aatagccaag atttgggagc
 aaactgagtg tccatcaaca gatgaatgga taaagaaaat gctgtgtata cacgcaacgg
 tatactagtt agccatgaaa aagaatgaga acatgtcatt tgcaacaaca tggatggaac
 tggaggtcac tatattaagt gaaataagcc aggcacagaa agacaaactt tgcatgttct
 cacttatttg tgggagataa agattaaaac aattgaactc gagatagagt aaaaggatgg
 ttaccagagg ctgggaaggg tagtgggggt tgtgagggaa gtagagatgg ttaatggaaa
 caaaaaaaaa atagaaaaat gattaaaacc tggtatttga tagcacaaca gggtgactat
 agtcaatgat ttaattatac atttaaaaat aactaaaaga gagctgggca cagtggctca
 cagctgtaat ttcagcactt tgggaggccg agtcatatga ctcacttaag gccaggattt
 ggaggcctgc ctggccaaca tggtgaaacc cccttctcta caaaaaacag gaaaattagc
 tggacttggt ggcatacacc tgtaatccca gctacttggg tggccgaggc atgagaatca
 ctcgaactca ggaggcggag gttgcagtga gctgagatcg cgccactgca ctccagcctg
 ggtaacagag tgagactgtc tctaaataaa taagacgaaa agagtataat gaggttgttt
 gtaagacaag gggtaaatgt ttgaggtagt agataccccc atttacctct atgtgattat
 tatgtactgt ctgtctatgt tagaatatct catggacccc ataaacctat acacctacta
 tgtacccaca aaaagcaaaa aGAAAAAGAG CTTATGGGta tcaatttttc tgttagtacc
 gcttttgttg tgtcccagca agttttggta cattgtcttc tcatctttat ttgcatttaa
 gtattttcta atttcccttc tgattttttt tttttttaat ttaagtccca ggacacatgt
 gcaggacatg caggtttgtt acgtaggtaa atgtgtgcca cggtggtttg ctgcacctgt
 caacccatca cctaggtgtt aagccctaca tgcattaact atttatactg atgctctctc
 tccctctgcc cccctttttc tttgattcat tggttaagag tatgttgttt catttccata
 catttgttaa tttttccatt ttacttctat tattgatttc taagcttatc ccattatcgt
 tggagaagat cctttgtatg actggcatct ttttgagtac tttgagactt aattcgtggc
 ctgatctctc ctgggaacat ttccacgtgc acttgggatg cacatgcatg ctgtggtcat
 gggtcgagtg ttctctgcat gttggttaga tctaggtggc ttattgtgtt aagtcctcta
 ttctgtaact tatcttctgc ctggttgttc tattcattat agagaatgtg gtactgaagt
 ctctcaccat cattgtagaa ctatttctcc cttcggttct gtaaattttt cctttgtgtc
 ttttgatcgt tagctgttag aggcataaat gtttacaatg gttatctgta acatcttctt
 gcagcctcga acctttaagt gtgcagcgtc ctcttttgtc tcttgtgacc tttctaggtt
 tattataaaa ccatttttgg ctgatgttag tgtagccact ctgctttttg tgtttgccgt
 ttgcatggaa cctctttctc cactctttcc accctttcac tttcaatctt tttgtgtctt
 tggctctaac gcgagtctct agtagacagc atgtagctgg atcatgttta tctattctgc
 cactgccgat atcacctttt gatatacaga ctttacattt tcatAAAATT TAATTTGTCC
 ACGTGCTTAG Cccctgtgat ccagcaatcc cactgctagt tatatatcca aaaagaaaga
 aaatcagtcc agcagggaca gatccgcact cctacgttta ctgcggcact gttcacCGGA
 gcctgtgcct tcaatgtcgt attcaagaaa tcatcctcaa atccaaagtc tttctatttt
 ttcctatgtg ttcctattgc tttaggtctt acatttatac ctttgaccca tattgagtta
 attttttata tccagcttta tttttttgca tgtagatact cagttatccc accatcattt
 gtcgaaaaga ctatACGTGA ACTTTTTGAA Tttgcttttc tcacgtaata gtatttccta
 gagaccacta catatcagtt cgtggggtcc ttccatattc ttttttacag ccaccccata
 ctttatggtt ggatgtgcca tgcttattca aaccctctcc tatttatggg catttaggtt
 gttctgatat tgtgcaatga taaataatgt tgcaaagtat agccttatac atatgtctat
 tgtattcttg aaacaatgtt gcaaagaata actttgtagg tatggatgtt cctattgttg
 gaggtgttat tttcagggta gattcctaga aatgggagtg ttgggctgaa agagaagccc
 gtagttttgt tggatgtgac caaatttccc tgcagaacgg ttgcacattt gcactccccc
 agcaatgcat gagcataccg gtttttttta cagttgcgcc agcagcgtgc tgtcacacCA
 CTTTTTGCCA GGTCCATAGC TTTgttttaa tctgtatttc tgtaattaca ttgaatttga
 atgttttccc tgtgtctaaa agtcatgtgt gtgtgtattt gtaaatcgtc tgtcttctca
 tttccaactt cttccattgg gtttttggtt cttggtctct caatttttaa gtcatttata
 ttgtgggaAC GTTTGTCTGG ACTAATGTGA ATTGTTTTCC CAGCTGGTCA CTTGTCTTTG
 ACTTTGCTTA TGGTGCTTTT TGCTATGAGA AATTTCGCAT GTTTATATCA TCA

  GeneView back to top
GeneView via analysis of contig annotation: KCNQ1 potassium voltage-gated channel, KQT-like subfamily, member 1
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label
Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_009237->NM_000218
function
referenceNT_009237->NM_181798
function
"
Group
label
Contig-->mRNA-->ProteinContig
position
mRNA
orientation
mRNA
pos
FunctiondbSNP
allele
Protein
residue
Codon
pos
Amino acid
pos
referenceNT_009237->NM_000218->NP_0002091300671forwardintron
referenceNT_009237->NM_181798->NP_8614631300671forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs179392 maps exactly once on NCBI human chromosome 11
ChromosomeContig
accession
Contig
position
Chromosome
position
Hit
orientation
Contig
Allele
Assembly
Type
Group
label
Contig
label
Neighbor
SNP
SNP_flank
position
11NW_001838018.217076432303041minusCalt_assembly_8HuRefHuRefview9257
11NT_009237.1713006712470006plusGref_assemblyreferencereferenceview9257
11NW_924962.121280072548251plusGalt_assembly_1CeleraCeleraview9257

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_028310 AC000377 AC003693 AC003693.1 AJ006345
dbSNP Blast Analysis
GenBank HTGS Finished:
AP006463.2

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterwith2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .