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An organized view of the transcripome



Library:798 (dbEST ID)

Gall bladder I

Library Description

Organism:Homo sapiens
Developmental stage:adult, 25 yrs
Sex:female
Organ:gall bladder
Vector:pBluescript SK-
Cloning site 1:EcoRI
Cloning site 2:XhoI

Source: Kerlavage, AR, The Institute for Genomic Research

Gene Content Analysis

1,564 ESTs from this library were grouped into 1,001 UniGene entries (putative genes) [UniGene build #218, 05-Jan-2009]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
1 639 Hs.702021 Heat shock 70kDa protein 8.
1 639 Hs.699247 Cysteine rich transmembrane BMP regulator 1 (chordin-like).
1 639 Hs.69855 Cold shock domain containing E1, RNA-binding.
1 639 Hs.696113 Glutamyl-tRNA synthetase 2, mitochondrial (putative).
1 639 Hs.695999 Chromosome 18 open reading frame 10.
1 639 Hs.695943 ADP-ribosylation factor 4.
1 639 Hs.694721 CD24 molecule.
1 639 Hs.69293 Hexosaminidase B (beta polypeptide).
1 639 Hs.692329 Transcribed locus.
1 639 Hs.687907 Transcribed locus.
1 639 Hs.684594 MRNA full length insert cDNA clone EUROIMAGE 122871.
1 639 Hs.681911 Transcribed locus.
1 639 Hs.681088 Transcribed locus.
1 639 Hs.676483 Transcribed locus, strongly similar to NP_038691.1 splicing factor, arginine/serine-rich 3 (SRp20) [Mus musculus].
1 639 Hs.671973 Transcribed locus, moderately similar to XP_001175078.1 PREDICTED: hypothetical protein [Pan troglodytes].
1 639 Hs.671165 Transcribed locus.
1 639 Hs.670654 Transcribed locus, strongly similar to XP_001174079.1 PREDICTED: hypothetical protein [Pan troglodytes].
1 639 Hs.664948 Transcribed locus.
1 639 Hs.661959 CDNA FLJ41020 fis, clone UTERU2019163.
1 639 Hs.661958 Transcribed locus.
1 639 Hs.661957 Transcribed locus.
1 639 Hs.661948 CDNA FLJ26148 fis, clone ADG00428.
1 639 Hs.661947 CDNA FLJ14259 fis, clone PLACE1001076.
1 639 Hs.661944 Transcribed locus.
1 639 Hs.661943 Transcribed locus, moderately similar to XP_619824.1 PREDICTED: similar to BTB (POZ) domain containing 1 [Mus musculus].
1 639 Hs.661942 Chemokine (C-C motif) ligand 4-like 1.
1 639 Hs.661940 Transcribed locus.
1 639 Hs.661939 CDNA FLJ45858 fis, clone OCBBF2030963.
1 639 Hs.660147 Transcribed locus, strongly similar to NP_002202.2 integrin beta 1 isoform 1A precursor [Homo sapiens].
1 639 Hs.659695 Transcribed locus, weakly similar to NP_001006512.1 NEDD8-conjugating enzyme [Gallus gallus].
1 639 Hs.658566 CDNA FLJ53558 complete cds, highly similar to Protein disulfide-isomerase A3 precursor (EC 5.3.4.1).
1 639 Hs.658353 CDNA FLJ37931 fis, clone CTONG2004397.
1 639 Hs.657639 Transcribed locus.
1 639 Hs.65758 Inositol 1,4,5-triphosphate receptor, type 3.
1 639 Hs.657347 Muscleblind-like 2 (Drosophila).
1 639 Hs.657015 Syndecan binding protein (syntenin) 2.
1 639 Hs.656901 Chromosome 19 open reading frame 28.
1 639 Hs.656836 Ecotropic viral integration site 5.
1 639 Hs.656799 RCAN family member 3.
1 639 Hs.656074 Nudix (nucleoside diphosphate linked moiety X)-type motif 22.
1 639 Hs.655988 Chromosome 12 open reading frame 10.
1 639 Hs.655812 Transcribed locus.
1 639 Hs.655758 KIAA1219.
1 639 Hs.655501 Solute carrier family 35, member C2.
1 639 Hs.655452 Full length insert cDNA clone YB21G12.
1 639 Hs.655424 Transcribed locus, strongly similar to NP_058944.1 heterogeneous nuclear ribonucleoprotein A1 [Rattus norvegicus].
1 639 Hs.655393 Sialic acid binding Ig-like lectin 7.
1 639 Hs.655346 Selenoprotein X, 1.
1 639 Hs.655336 Coiled-coil domain containing 69.
1 639 Hs.655327 Prefoldin subunit 5.
1 639 Hs.655255 Similar to solute carrier family 35, member E2.
1 639 Hs.655180 Transcribed locus, strongly similar to NP_001032253.1 mortality factor 4 like 1 isoform 2 [Gallus gallus].
1 639 Hs.655165 Chromosome 7 open reading frame 44.
1 639 Hs.655070 CDNA: FLJ21556 fis, clone COL06353.
1 639 Hs.654978 RAB27A, member RAS oncogene family.
1 639 Hs.654965 Thioredoxin domain containing 14.
1 639 Hs.654950 Transcribed locus.
1 639 Hs.654657 Signal-induced proliferation-associated 1 like 1.
1 639 Hs.654628 Ankyrin repeat and LEM domain containing 2.
1 639 Hs.654588 Glucuronidase, beta pseudogene.
1 639 Hs.652562 Transcribed locus.
1 639 Hs.652429 Nuclear casein kinase and cyclin-dependent kinase substrate 1.
1 639 Hs.652390 Tubulin, alpha 1c.
1 639 Hs.652174 Plasminogen-like B1.
1 639 Hs.651905 Casein kinase 1, gamma 2.
1 639 Hs.651228 Cell division cycle 2-like 1 (PITSLRE proteins).
1 639 Hs.650174 Major histocompatibility complex, class I, E.
1 639 Hs.649302 Transcribed locus.
1 639 Hs.647421 GABA(A) receptor-associated protein.
1 639 Hs.647044 Transducin (beta)-like 2.
1 639 Hs.646647 Chromosome 13 open reading frame 33.
1 639 Hs.645344 Transcribed locus, strongly similar to NP_775462.2 ribosomal protein L13A [Rattus norvegicus].
1 639 Hs.644924 Transcribed locus.
1 639 Hs.6449 Cleavage and polyadenylation specific factor 3-like.
1 639 Hs.644788 Mediator complex subunit 28.
1 639 Hs.644701 Transcribed locus.
1 639 Hs.644306 Tropomyosin 3.
1 639 Hs.644231 V-ets erythroblastosis virus E26 oncogene homolog 2 (avian).
1 639 Hs.643801 Versican.
1 639 Hs.643605 Mesenchymal stem cell protein DSC96.
1 639 Hs.643566 Mitogen-activated protein kinase-activated protein kinase 2.
1 639 Hs.643560 KIAA0467.
1 639 Hs.643472 Heterogeneous nuclear ribonucleoprotein H3 (2H9).
1 639 Hs.643465 Chromodomain helicase DNA binding protein 1.
1 639 Hs.643357 ADAM metallopeptidase with thrombospondin type 1 motif, 1.
1 639 Hs.642715 Chromosome 1 open reading frame 57.
1 639 Hs.642127 Transcribed locus.
1 639 Hs.64016 Protein S (alpha).
1 639 Hs.634116 Transcribed locus.
1 639 Hs.634115 Transcribed locus.
1 639 Hs.634114 Transcribed locus.
1 639 Hs.634113 Transcribed locus.
1 639 Hs.633003 Apolipoprotein A-I.
1 639 Hs.632891 Transcribed locus, strongly similar to NP_001002079.1 ribosomal protein S13 [Danio rerio].
1 639 Hs.632717 Myosin, light chain 6, alkali, smooth muscle and non-muscle.
1 639 Hs.632483 Roadblock domain containing 3.
1 639 Hs.632294 Zinc finger and SCAN domain containing 21.
1 639 Hs.632050 Werner syndrome.
1 639 Hs.631995 Solute carrier family 39 (zinc transporter), member 7.
1 639 Hs.631599 Transcribed locus, strongly similar to NP_060927.1 proline rich 13 isoform 1 [Homo sapiens].

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Source: NCBI UniGene

EST Sequences

1,775 EST sequences from this library have been submitted to the public sequence database as of 05-Jan-2009.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • liver
  • normal
  • adult
  • female
  • non-normalized
  • bulk

Source: NCBI Clone Registry



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