R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|139588|sp|P28087|VSH_MUMPR SMALL HYDROPHOBIC PROTEIN >gi|94037|pir||S24827
small hydrophobic protein - mumps virus >gi|60595|emb|CAA45241.1|
(X63708) SH gene [Mumps virus]
Length = 57
Frame 2 hits (HSPs): __________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 57
0 20 40
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 8..32
PFAM SH: Viral small hydrophobic protein 1..57
PRODOM PD001504: VSH(13) 27..56
__________________
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 2.2, P = 0.89
Identities = 13/30 (43%), Positives = 20/30 (66%), Frame = +2
Query: 161 LLLLFRGLCLVKIVIVLLFYQTVVRHCVLH 250
L+LL+R + L +I+ + Y+T VRH LH
Sbjct: 15 LILLYRIITLYVWIILTITYKTSVRHAALH 44
>gi|102069|pir||B35349 H+-transporting ATP synthase (EC 3.6.1.34) protein 6 -
Sauroleishmania tarentolae mitochondrion (SGC6) (fragment)
Length = 67
Frame 3 hits (HSPs): _________________________________
Annotated Domains: ____________
__________________________________________________
Database sequence: | | | | | 67
0 20 40 60
__________________
Annotated Domains:
PROSITE CRYSTALLIN_BETAGAMMA: Crystallins beta a 43..58
__________________
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 2.2, P = 0.89
Identities = 19/45 (42%), Positives = 25/45 (55%), Frame = +3
Query: 153 MFDYCYCLEDSV*LK*LLCFCF------IRQL*GTVFYMCLQLSACI 275
MF + C D V ++ LLCFC+ I L VFY+C +L CI
Sbjct: 1 MFVFFVC--DLVIMRILLCFCYSVWSRIIFVLPVNVFYICTELMFCI 45
>gi|6425501|emb|CAB60603.1| (AL132865) contains similarity to Pfam domain:
PF00001 (7 transmembrane receptor (rhodopsin family)), Score=10.9,
E-value=0.0031, N=1 [Caenorhabditis elegans]
Length = 310
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | | 310
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 5.7, P = 1.0
Identities = 26/89 (29%), Positives = 42/89 (47%), Frame = +3
Query: 123 CSLQIHKEV*MFDYCYCLEDSV*LK*LLCFCFIRQL*GTVFYMCLQLSACIVIFKVRFIK 302
C+ IH V MF Y L + CF+ G +F + +Q S C++I R
Sbjct: 59 CTYLIHLRVLMFLDMYMLTSTQ--------CFLLSAYG-LFALNMQSSLCLIIGLDRLYN 109
Query: 303 LTSQINYSLSPSSGGIDLFLYLIEVFIIV 389
+T + YS P+S I LFL+ + +++
Sbjct: 110 VTYPLRYSQLPNSFYIALFLFCVGFSVLI 138
>gi|1840457|gb|AAC56591.1| (U50293) SH protein [Mumps virus]
Length = 57
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 57
0 20 40
Plus Strand HSPs:
Score = 60 (21.1 bits), Expect = 6.4, P = 1.0
Identities = 13/30 (43%), Positives = 19/30 (63%), Frame = +2
Query: 161 LLLLFRGLCLVKIVIVLLFYQTVVRHCVLH 250
L LL+ + L +I+ + Y+T VRH VLH
Sbjct: 15 LTLLYLIITLYIWIILTITYETTVRHAVLH 44
>gi|808679|gb|AAA66559.1| (M19004) unknown protein [Saimiriine herpesvirus 2]
Length = 53
Frame 1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 53
0 20 40
Plus Strand HSPs:
Score = 59 (20.8 bits), Expect = 8.4, P = 1.0
Identities = 12/29 (41%), Positives = 15/29 (51%), Frame = +1
Query: 199 SYC-AFVLSDSCKALCSTCVCSCLHALLF 282
S C A SD C+ TC SC+H L +
Sbjct: 1 SICRAAAASDLCELCQGTCPASCIHTLFY 29
>gi|1840429|gb|AAC56577.1| (U50181) SH protein [Mumps virus]
Length = 57
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 57
0 20 40
Plus Strand HSPs:
Score = 59 (20.8 bits), Expect = 8.4, P = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Frame = +2
Query: 161 LLLLFRGLCLVKIVIVLLFYQTVVRHCVLH 250
L+LL+ + L +I+ + Y+T VRH LH
Sbjct: 15 LILLYLIITLYVWIILTITYKTAVRHAALH 44
>gi|1840439|gb|AAC56582.1| (U50284) SH protein [Mumps virus]
>gi|1840447|gb|AAC56586.1| (U50288) SH protein [Mumps virus]
>gi|1840449|gb|AAC56587.1| (U50289) SH protein [Mumps virus]
>gi|1840453|gb|AAC56589.1| (U50291) SH protein [Mumps virus]
>gi|9581809|emb|CAC00540.1| (AJ272363) small hydrophobic protein
[Mumps virus]
Length = 57
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 57
0 20 40
Plus Strand HSPs:
Score = 59 (20.8 bits), Expect = 8.4, P = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Frame = +2
Query: 161 LLLLFRGLCLVKIVIVLLFYQTVVRHCVLH 250
L+LL+ + L +I+ + Y+T VRH LH
Sbjct: 15 LILLYLIITLYVWIILTITYKTAVRHAALH 44
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.354 0.161 0.561
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.358 0.163 0.609
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.356 0.154 0.543
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.158 0.527
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.348 0.152 0.535
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.375 0.172 0.697
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 148 147 10. 74 3 12 22 0.12 33
30 0.11 36
+2 0 148 147 10. 74 3 12 22 0.12 33
30 0.11 36
+1 0 148 147 10. 74 3 12 22 0.12 33
30 0.11 36
-1 0 148 148 10. 74 3 12 22 0.091 34
30 0.11 36
-2 0 148 147 10. 74 3 12 22 0.12 33
30 0.11 36
-3 0 148 147 10. 74 3 12 22 0.12 33
30 0.11 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 7
No. of states in DFA: 591 (58 KB)
Total size of DFA: 186 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 147.96u 1.05s 149.01t Elapsed: 00:00:26
Total cpu time: 147.98u 1.07s 149.05t Elapsed: 00:00:26
Start: Sat Feb 2 04:53:56 2002 End: Sat Feb 2 04:54:22 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000