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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs28204524          
refSNP ID: rs28204524
Organism:mouse (Mus musculus)
Molecule Type:Genomic
Created/Updated in build:125/128
Map to Genome Build:37.1
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Strain:not submitted
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss37128853 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs28204524 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss37128853PERLEGEN|NES08330688byFreqfwd/BC/Ttacgcattggaatttgagtctttagtggaacataagtccatgcatatagtcagaatcttt04/26/0507/28/05125Genomic100 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs28204524|allelePos=101|totalLen=201|taxid=10090|snpclass=1|alleles='C/T'|mol=Genomic|build=125
 GGTTAGAACC CAGACTGTCT CTATAAAAGA GACTTCACCT CTGCATTTCC TTCTTGCTCA
 CATCGCATCA TACGCATTGG AATTTGAG
 TCTTTAGTGG AA
 Y
 CATAAGTCCA TG
 CATATAGTCA GAATCTTTCA CTTTTTCATT CAGGGCTTTG CACTATTTCT CCTTTCATTG
 GCTCTACCAG ATTATGTACT ACCCTCTT

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs28204524 maps exactly once on NCBI mouse chromosome 11
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
11NT_096135.5903289543528017plusCref_strainC57BL/6JC57BL/6Jview100
11NW_001030461.179757348340585plusCalt_assembly_1CeleraCeleraview100

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NC_000077.1
dbSNP Blast Analysis
GenBank HTGS Finished:
AL732633.6

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceC/C
T/T
ss37128853MM_PANEL2 26IG 11 2

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
-1.000+/-0151500

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byFreqUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .