proteins
| 22 proteins |
J | COG2163 | Ribosomal protein L14E/L6E/L27E | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Pyrobaculum aerophilum (Thermoproteales | Thermoprotei) | ||||
| PAE0862 | ||||
103 letters (r) 0
0 392 = ||| 1 PAE0862 (103) = 5
-3 281 = || 4 APE0976 (105) = -1
10
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAE0862
(103 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
PAE0862 155 2e-38
APE0976 112 1e-25
SSO5763 107 5e-24
MK0833 104 4e-23
PAB7290 79 2e-15
PH1265a 79 2e-15
MJ0657 76 1e-14
MTH31 57 7e-09
YHL001w 50 9e-07
YKL006w 48 4e-06
YLR448w 39 0.002
YML073c 38 0.003
SPCC622.18 34 0.071
SPAC1805.13 33 0.14
ECU08g1780 29 2.4
ECU04g0330 28 2.5
lin1178 28 3.2
SPCC74.05 28 3.2
SPBC685.07c 28 3.2
BH0157 28 4.8
YDR471w 28 5.3
mll2410 28 5.4
YHR010w 27 6.2
# >PAE0862
# Length = 103
#
# Score = 155 bits (392), Expect = 2e-38
# Identities = 103/103 (100%), Positives = 103/103 (100%)
#
# Query: 1 MVKVIDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDK 60
# MVKVIDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDK
# Sbjct: 1 MVKVIDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDK 60
#
# Query: 61 KIDIKRGASDDEVAKAIEAAGLVEYMRERVKPSFVGITKAETK 103
# KIDIKRGASDDEVAKAIEAAGLVEYMRERVKPSFVGITKAETK
# Sbjct: 61 KIDIKRGASDDEVAKAIEAAGLVEYMRERVKPSFVGITKAETK 103
#
#
# >APE0976
# Length = 105
#
# Score = 112 bits (281), Expect = 1e-25
# Identities = 59/91 (64%), Positives = 79/91 (85%)
#
# Query: 1 MVKVIDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDK 60
# M KV+++GR+ VK GREAGRK V+VDI+DEN+V++TGPK +TGV+RRRVNI+HIE DK
# Sbjct: 6 MAKVVEVGRICVKTRGREAGRKCVIVDIIDENFVLVTGPKSLTGVRRRRVNIDHIEILDK 65
#
# Query: 61 KIDIKRGASDDEVAKAIEAAGLVEYMRERVK 91
# K+DI++GASD+EV KA+E AGL ++MRE V+
# Sbjct: 66 KVDIQKGASDEEVLKALEEAGLADFMREPVR 96
#
#
# >SSO5763
# Length = 96
#
# Score = 107 bits (267), Expect = 5e-24
# Identities = 58/87 (66%), Positives = 76/87 (86%)
#
# Query: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
# I++GR+ VKV GREAG K V+VDI+D+N+V++TGPK ITGVKRRRVNI H+EPTDKKIDI
# Sbjct: 4 IEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDI 63
#
# Query: 65 KRGASDDEVAKAIEAAGLVEYMRERVK 91
# ++GASD+EV K +E + L EYM+E++K
# Sbjct: 64 QKGASDEEVKKKLEESNLTEYMKEKIK 90
#
#
# >MK0833
# Length = 94
#
# Score = 104 bits (259), Expect = 4e-23
# Identities = 55/86 (63%), Positives = 72/86 (82%)
#
# Query: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
# I++GR+ VK GREAG+ VVVDIVDEN+V+ITGPK +TGVKRRR NI H+EPT +K+DI
# Sbjct: 5 IEVGRICVKTAGREAGKYCVVVDIVDENFVIITGPKDVTGVKRRRCNIKHLEPTPEKVDI 64
#
# Query: 65 KRGASDDEVAKAIEAAGLVEYMRERV 90
# RGASD+EV +A+E AGL++ M+E +
# Sbjct: 65 DRGASDEEVKEALEEAGLLDLMKEGI 90
#
#
# >PAB7290
# Length = 82
#
# Score = 78.6 bits (192), Expect = 2e-15
# Identities = 44/78 (56%), Positives = 61/78 (77%), Gaps = 1/78 (1%)
#
# Query: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
# ID+GR+ V + GR AG+K V+VDI+D+N+V++TG + VKRRR+NI H+EP +KIDI
# Sbjct: 4 IDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGAG-LNKVKRRRMNIKHLEPLPEKIDI 62
#
# Query: 65 KRGASDDEVAKAIEAAGL 82
# RGASD+EV A+E AG+
# Sbjct: 63 PRGASDEEVKAALEKAGI 80
#
#
# >PH1265a
# Length = 82
#
# Score = 78.6 bits (192), Expect = 2e-15
# Identities = 44/78 (56%), Positives = 61/78 (77%), Gaps = 1/78 (1%)
#
# Query: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
# ID+GR+ V + GR AG+K V+VDI+D+N+V++TG + VKRRR+NI H+EP +KIDI
# Sbjct: 4 IDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGAG-LNKVKRRRMNIKHLEPLPEKIDI 62
#
# Query: 65 KRGASDDEVAKAIEAAGL 82
# RGASD+EV A+E AG+
# Sbjct: 63 PRGASDEEVKAALEKAGI 80
#
#
# >MJ0657
# Length = 80
#
# Score = 76.3 bits (186), Expect = 1e-14
# Identities = 43/80 (53%), Positives = 62/80 (76%), Gaps = 5/80 (6%)
#
# Query: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
# I++GRV +K GREAG+ V+VDI+D+N+V++ G VKRRR NI H+EPT+KK+DI
# Sbjct: 4 IEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGL-----VKRRRCNIKHLEPTEKKVDI 58
#
# Query: 65 KRGASDDEVAKAIEAAGLVE 84
# +GAS +EV A++AAGL++
# Sbjct: 59 PKGASTEEVKLALDAAGLLK 78
#
#
# >MTH31
# Length = 75
#
# Score = 57.0 bits (136), Expect = 7e-09
# Identities = 36/77 (46%), Positives = 53/77 (68%), Gaps = 9/77 (11%)
#
# Query: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
# I++GRV VK GREAG V++DI+D+N+V + G VK RR N++H+EPT+ KI++
# Sbjct: 4 IEVGRVCVKTAGREAGENGVILDIIDKNFVEVVG----VNVKNRRCNVSHLEPTENKIEL 59
#
# Query: 65 KRGASDD--EVAKAIEA 79
# K SDD E+ K +E+
# Sbjct: 60 K---SDDIEEIKKELES 73
#
#
# >YHL001w
# Length = 138
#
# Score = 50.1 bits (118), Expect = 9e-07
# Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
#
# Query: 3 KVIDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKI 62
# +++++GRVV+ G+ AG+ A +V+I+D+ V+I GPK GV R+ +N+ + T
# Sbjct: 13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPK--AGVPRQAINLGQVVLTPLTF 70
#
# Query: 63 DIKRGASDDEVAKAIEAAGLVE 84
# + RGA V+K AAG+ E
# Sbjct: 71 ALPRGARTATVSKKWAAAGVCE 92
#
#
# >YKL006w
# Length = 138
#
# Score = 47.8 bits (112), Expect = 4e-06
# Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
#
# Query: 3 KVIDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKI 62
# +++++GRVV+ G+ AG+ A +V+I+D+ V+I GPK GV R+ +N+ + T
# Sbjct: 13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPK--AGVPRQAINLGQVVLTPLTF 70
#
# Query: 63 DIKRGASDDEVAKAIEAAGLVE 84
# + RGA V+K AA + E
# Sbjct: 71 ALPRGARTATVSKKWAAAAVCE 92
#
#
# >YLR448w
# Length = 176
#
# Score = 38.9 bits (89), Expect = 0.002
# Identities = 18/58 (31%), Positives = 36/58 (62%)
#
# Query: 8 GRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDIK 65
# G V++ + GR G++ V + +++N +++TGP + GV RRVN ++ T K+ ++
# Sbjct: 37 GTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVE 94
#
#
# >YML073c
# Length = 176
#
# Score = 38.1 bits (87), Expect = 0.003
# Identities = 18/58 (31%), Positives = 36/58 (62%)
#
# Query: 8 GRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDIK 65
# G V++ + GR G++ V + +++N ++I+GP + GV RRVN ++ T K+ ++
# Sbjct: 37 GTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVE 94
#
#
# >SPCC622.18
# Length = 195
#
# Score = 33.9 bits (76), Expect = 0.071
# Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
#
# Query: 8 GRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDK-KIDIKR 66
# G V + + GR G++ VV+ + E+ +V+TGP + GV RRVN ++ T KID+
# Sbjct: 55 GTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVS- 112
#
# Query: 67 GASDDEVAKA 76
# G S ++ KA
# Sbjct: 113 GVSVEKFTKA 122
#
#
# >SPAC1805.13
# Length = 134
#
# Score = 32.7 bits (73), Expect = 0.14
# Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
#
# Query: 3 KVIDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKI 62
# + +++GRVV+ G G+ AV+VDIVD +I P + R+ + + T +
# Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALID--SPCSEFPRQVIRYGSVVLTHIVM 63
#
# Query: 63 DIKRGASDDEVAKAIEA 79
# + RGA VAK +A
# Sbjct: 64 KLPRGARSGIVAKKWKA 80
#
#
# >ECU08g1780
# Length = 155
#
# Score = 28.9 bits (63), Expect = 2.4
# Identities = 17/57 (29%), Positives = 31/57 (53%)
#
# Query: 8 GRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
# G VVV + G A R+ V + +++N + GPK I G+ R++ ++ T +D+
# Sbjct: 30 GMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSINGIPLFRIDERYLLATSTVLDL 86
#
#
# >ECU04g0330
# Length = 126
#
# Score = 28.5 bits (62), Expect = 2.5
# Identities = 13/26 (50%), Positives = 19/26 (73%)
#
# Query: 10 VVVKVLGREAGRKAVVVDIVDENYVV 35
# +VV G+ AG+KAVV+ +DE YV+
# Sbjct: 8 IVVVTSGKNAGKKAVVIKQIDERYVL 33
#
#
# >lin1178
# Length = 289
#
# Score = 28.5 bits (62), Expect = 3.2
# Identities = 12/45 (26%), Positives = 24/45 (52%), Gaps = 1/45 (2%)
#
# Query: 24 VVVDIVDENYVVITGPKPITGVKRRRVN-INHIEPTDKKIDIKRG 67
# V+ +V + Y+++T PKP + N +N + P ++I + G
# Sbjct: 30 VIASVVRQQYLIMTAPKPDPAFHSKEQNFLNELSPRAQEIQAEHG 74
#
#
# >SPCC74.05
# Length = 136
#
# Score = 28.5 bits (62), Expect = 3.2
# Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 25/89 (28%)
#
# Query: 1 MVKVIDIGRVVVKVLGREAGRKAVVVDIVDE-------NYVVITG----PKPIT---GVK 46
# MVK++ G+V + GR AG+K V++ VD+ + V+ G P +T G K
# Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
#
# Query: 47 R-----------RRVNINHIEPTDKKIDI 64
# R + +N NH+ PT +++
# Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALEL 89
#
#
# >SPBC685.07c
# Length = 136
#
# Score = 28.1 bits (61), Expect = 3.2
# Identities = 27/89 (30%), Positives = 43/89 (47%), Gaps = 25/89 (28%)
#
# Query: 1 MVKVIDIGRVVVKVLGREAGRKAVVVDIVDE-------NYVVITG----PKPIT---GVK 46
# MVK++ G+V + GR AG+K V++ +D+ + V+ G P +T G K
# Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
#
# Query: 47 R--RR---------VNINHIEPTDKKIDI 64
# R RR VN NH+ PT +++
# Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALEL 89
#
#
# >BH0157
# Length = 102
#
# Score = 27.7 bits (60), Expect = 4.8
# Identities = 16/54 (29%), Positives = 31/54 (56%)
#
# Query: 6 DIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTD 59
# +IG++V V GR+ + +V++ VD+ +V I + +R N+NH++ D
# Sbjct: 9 EIGQIVKIVKGRDRDQFSVIIKRVDDRFVYIADGDKRKVDRAKRKNMNHLKLID 62
#
#
# >YDR471w
# Length = 136
#
# Score = 27.7 bits (60), Expect = 5.3
# Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 25/90 (27%)
#
# Query: 1 MVKVIDIGRVVVKVLGREAGRKAVVVDIVDE-------NYVVITG----PKPIT---GVK 46
# M K + G+V V V GR AG+K V+V DE + ++ G P +T G K
# Sbjct: 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAK 60
#
# Query: 47 R-----------RRVNINHIEPTDKKIDIK 65
# + + VN NH+ PT +D++
# Sbjct: 61 KVAKRTKIKPFIKVVNYNHLLPTRYTLDVE 90
#
#
# >mll2410
# Length = 161
#
# Score = 27.7 bits (60), Expect = 5.4
# Identities = 11/24 (45%), Positives = 18/24 (74%)
#
# Query: 3 KVIDIGRVVVKVLGREAGRKAVVV 26
# +++D R VVKV+GR+ G + V+V
# Sbjct: 126 RIVDANRRVVKVVGRQDGDRVVIV 149
#
#
# >YHR010w
# Length = 136
#
# Score = 27.3 bits (59), Expect = 6.2
# Identities = 15/31 (48%), Positives = 19/31 (60%)
#
# Query: 1 MVKVIDIGRVVVKVLGREAGRKAVVVDIVDE 31
# M K + G+V V V GR AG+K V+V DE
# Sbjct: 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDE 31
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.317 0.138 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,237,708
Number of Sequences: 192987
Number of extensions: 430210
Number of successful extensions: 1407
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1370
Number of HSP's gapped (non-prelim): 46
length of query: 103
length of database: 59,019,183
effective HSP length: 79
effective length of query: 24
effective length of database: 43,773,210
effective search space: 1050557040
effective search space used: 1050557040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
S2: 58 (26.9 bits)