Reference SNP(refSNP) Cluster Report: rs3855955

Reference SNP(refSNP) Cluster Report: rs3855955

refSNP ID: rs3855955
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	108/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_004421.2:c.606-194C>T
NM_182779.3:c.606-194C>T
NT_004350.18:g.754709G>A

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss2296632 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs3855955 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss2296632	TSC-CSHL\|TSC0396351	fwd/B	C/T	tctggctacatgtgtctgtgcccagtttgc	tgtctctgggattttcgtgtgtgctcatat	06/14/01	10/10/03	108	Genomic	unknown
ss5442727	TSC-CSHL\|TSC1350430	rev/T	A/G	atatgagcacacacgaaaatcccagagaca	gcaaactgggcacagacacatgtagccaga	09/20/02	10/10/03	108	Genomic	unknown
ss74979568	ILLUMINA\|ILMN_Human_1M_rs3855955	fwd/B	C/T	tctggctacatgtgtctgtgcccagtttgc	tgtctctgggattttcgtgtgtgctcatat	08/28/07	08/29/07	129	Genomic	unknown
ss87159180	BCMHGSC_JDW\|JWB-0000648	rev/T	A/G	atatgagcacacacgaaaatcccagagaca	gcaaactgggcacagacacatgtagccaga	02/26/08	02/26/08	129	Genomic	unknown

Fasta sequence (Legend)

 tgcatgtgca ggcgtgcgtg tgcaggtgtg tgcaggtgtg cctgtgtgca ggggtgcgtg
 tgtgcaggtg tgcatgtgtg tgcaggggtg cgtgtgtgca ggggtgcatt gtgcaggggt
 gcgtgtgcag gtgagtatgc aggtgtgcat gtgtgcctgt gcaggtgtgt agtgtgCAGG
 Ggtgcgtgtg tgcaggtgtg catgcgtgtg caggtgtgcg tgtgttcatg cgtgcgtgtg
 caggggtgtg catgtgtgcc tgtgcgcagg ggtgcatgtg tgcagggttg cgtgtgtgca
 ggtgtgtgtg caggtgtgtg catgtgtgcc ttgtgcaggg gtgcgtgtgt gcaggtgtgc
 atgtgtgTGC AGGTGTGCAT GTGTGCAGGT GTGTCAGTAG TGGATCTGGC TACATGTGTC
 TGTGCCCAGT TTGC
 Y
 TGTCTCTGGG ATTTTCGTGT GTGCTCATAT GCATATCACG TGTGCAGGGC CTGGGGCGTG
 GACGTCAGGC ACTGAGCCTG CTTTGGAACA AGCC

GeneView

GeneView via analysis of contig annotation: DVL1 dishevelled, dsh homolog 1 (Drosophila)

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_004350->NM_004421

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_004350->NM_004421->NP_004412	754709	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs3855955 maps exactly once on NCBI human chromosome 1

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
1	NT_113871.1	81140	unplaced	minus	G	ref_assembly	reference	reference	view	434
1	NW_001838585.1	528072	547319	minus	A	alt_assembly_8	HuRef	HuRef	view	434
1	NT_004350.18	754709	1265940	minus	G	ref_assembly	reference	reference	view	434
Un	NW_927662.1	8460	unplaced	plus	C	alt_assembly_1	Celera	Celera	view	434

NCBI Resource Links

Submitter-Referenced

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
AL139287.24	AL732582.4

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .