proteins
2 BUDs| 592 proteins |
K | COG1309 | Transcriptional regulator | Help | |
|---|---|---|---|---|---|
| 28 from | query genome Caulobacter vibrioides (Caulobacterales | Alphaproteobacteria) | ||||
| 2 BUDs | CC0334 (CC0732 CC0733 ) CC0772 CC0809 CC0919 CC0992 CC1177 (CC1190 CC3118 ) CC1345 CC1539 CC1664 CC1786 CC1855 CC2080 CC2204 CC2339 CC2493 CC2608 CC2662 CC2794 CC2876 CC2977 CC3123 CC3192 CC3343 CC3716 | ||||
209 letters (r) 0
0 964 = ||| 1 CC2977 (209) = 22
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CC2977
(209 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
CC2977 375 e-104
mlr8177 36 0.075
BH3332 35 0.14
CC2493 35 0.15
RSc0698 34 0.20
MT0152 33 0.34
Rv0144 33 0.34
mlr0908 33 0.47
SMc03169 33 0.50
CC2876 32 0.82
PA2885 32 0.98
PM1135 32 1.3
MA2948 31 1.5
SMc04134 31 2.1
BS_yhgD 31 2.1
mlr7466 30 2.5
Cgl1504 30 3.1
MT0343 30 3.4
Rv0328 30 3.4
lin2558 30 3.4
DR0074 30 3.4
DRA0142 30 3.5
AGl676 30 4.1
BH1836 30 4.4
CC0334 30 4.4
SMc01285 30 5.4
mlr0325 30 5.4
AGc3518 29 5.6
BMEI0781 29 6.3
sll1286 29 6.5
BH3415_1 29 6.8
CC2794 29 6.9
mll4816 29 7.7
DR1081 29 8.4
SMc04348 29 8.9
aroH 29 9.0
AGl1093 28 9.7
VC1741 28 9.8
# >CC2977
# Length = 209
#
# Score = 375 bits (964), Expect = e-104
# Identities = 209/209 (100%), Positives = 209/209 (100%)
#
# Query: 1 MTLHLMARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRL 60
# MTLHLMARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRL
# Sbjct: 1 MTLHLMARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRL 60
#
# Query: 61 SDLPFEASIHTYARSLVNALRAEKTVRLGDIFALSLAEGLTDPTYGRPALEHIVEPTLQA 120
# SDLPFEASIHTYARSLVNALRAEKTVRLGDIFALSLAEGLTDPTYGRPALEHIVEPTLQA
# Sbjct: 61 SDLPFEASIHTYARSLVNALRAEKTVRLGDIFALSLAEGLTDPTYGRPALEHIVEPTLQA 120
#
# Query: 121 LEARLAVHIARGEMRADVDPRMAALQLVSPLLLACLHQDQLEGAHLRAMNLEKLIATTCG 180
# LEARLAVHIARGEMRADVDPRMAALQLVSPLLLACLHQDQLEGAHLRAMNLEKLIATTCG
# Sbjct: 121 LEARLAVHIARGEMRADVDPRMAALQLVSPLLLACLHQDQLEGAHLRAMNLEKLIATTCG 180
#
# Query: 181 AFLRAFAVSPPVWGYDEPPEPVLAAADWR 209
# AFLRAFAVSPPVWGYDEPPEPVLAAADWR
# Sbjct: 181 AFLRAFAVSPPVWGYDEPPEPVLAAADWR 209
#
#
# >mlr8177
# Length = 225
#
# Score = 35.8 bits (81), Expect = 0.075
# Identities = 45/147 (30%), Positives = 67/147 (44%), Gaps = 9/147 (6%)
#
# Query: 7 ARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSDLPFE 66
# ARG SF DL AA VS L H+F ++A+ AV+EE R ++A ++ +
# Sbjct: 29 ARGYHATSFGDLMTAAGVSGGALHHHFPTKKALAMAVIEE---RVAAAVEATWIAPVVAA 85
#
# Query: 67 ASIHTYARSLVNALRAEKT----VRLGDIFALSLAEGLTDPTYGRPALEHIVEPTLQALE 122
# AS R++ A+ AE VR + L+ L DP + R AL I QA+
# Sbjct: 86 ASAREGVRAVFEAVAAELEQQGFVRGCPLNNLAHELSLADPDF-RTALAGIFAAWRQAIA 144
#
# Query: 123 ARLAVHIARGEMRADVDPRMAALQLVS 149
# ++ G+ + DPR A V+
# Sbjct: 145 DKVTADQQEGKEQG-ADPRHFATLAVA 170
#
#
# >BH3332
# Length = 195
#
# Score = 34.7 bits (78), Expect = 0.14
# Identities = 17/61 (27%), Positives = 29/61 (46%)
#
# Query: 9 GGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSDLPFEAS 68
# G + S ++A A VSP T+ +YFG + + A L+ + + + SD PF
# Sbjct: 27 GYAKVSINEIATEARVSPATIFNYFGTKEKLYKATLDHWIEQQLSAYEGVLYSDRPFPEK 86
#
# Query: 69 I 69
# +
# Sbjct: 87 V 87
#
#
# >CC2493
# Length = 226
#
# Score = 34.7 bits (78), Expect = 0.15
# Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 3/145 (2%)
#
# Query: 8 RGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSDLPFEA 67
# +G A+F ++ A A S FG ++ +I+A++ R + +D +RL +
# Sbjct: 47 QGVAAATFENIGARAGYSRGLATQRFGSKQGLIEALIARLQARLQAQMDDRRLDQMNGLE 106
#
# Query: 68 SIHTYARSLVNALRAEKTVRLGDIFALSLAEGLTDPTYGRPALEHIVEPTLQALEARLAV 127
# ++ + + + L + +R + + +A + D + R + Q LEA +
# Sbjct: 107 AVLGFVDAFLTTLSQDGELR---AYFVMMAGAVGDMSDLRAPFAAAHKEAEQRLEAMIQR 163
#
# Query: 128 HIARGEMRADVDPRMAALQLVSPLL 152
# A G +R D+D AAL + S LL
# Sbjct: 164 GQAEGVIRPDLDADAAALMVGSLLL 188
#
#
# >RSc0698
# Length = 264
#
# Score = 34.3 bits (77), Expect = 0.20
# Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 11/175 (6%)
#
# Query: 6 MARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEE----CLRRGRPGLDAQRLS 61
# +ARG D+AAAA VS T+ YF ++ + AV++E L G +D S
# Sbjct: 50 VARGFAATRLEDVAAAAGVSKGTVYLYFANKVELFKAVVQENLLPVLAEGEALIDTFEGS 109
#
# Query: 62 DLPFEASIHTYARSLVNALRAEKTVRLGDIFALSLAEGLTDPTYGRPALEHIVEPTLQAL 121
# EA +H L+ + + L +AE P + E +++ +
# Sbjct: 110 S---EALLHEI---LMGWWEMIGESPVSGLTKLLMAEAGNFPDLAQYYHEAVIQRCDRLF 163
#
# Query: 122 EARLAVHIARGEMRADVDPRMAALQLVSPLLLACLHQDQLEGAHLRAMNLEKLIA 176
# + L +ARGE R + D M L LV+P+L + + R ++ + +A
# Sbjct: 164 MSILERGMARGEFR-ETDIDMTTLALVAPMLFLTMWKHSFGPCSHRELDPKAFVA 217
#
#
# >MT0152
# Length = 280
#
# Score = 33.5 bits (75), Expect = 0.34
# Identities = 13/39 (33%), Positives = 27/39 (68%)
#
# Query: 8 RGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEE 46
# RG + A+F+++A A+++ P + HYF ++R + V+E+
# Sbjct: 104 RGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQ 142
#
#
# >Rv0144
# Length = 280
#
# Score = 33.5 bits (75), Expect = 0.34
# Identities = 13/39 (33%), Positives = 27/39 (68%)
#
# Query: 8 RGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEE 46
# RG + A+F+++A A+++ P + HYF ++R + V+E+
# Sbjct: 104 RGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQ 142
#
#
# >mlr0908
# Length = 236
#
# Score = 33.1 bits (74), Expect = 0.47
# Identities = 15/50 (30%), Positives = 29/50 (58%)
#
# Query: 6 MARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGL 55
# + +G +RAS D+ A+A +S HYF + A+++A+ + R+ G+
# Sbjct: 24 LTQGYDRASLNDVIASAGISKGAFYHYFASKEALLEALADRFARQALAGV 73
#
#
# >SMc03169
# Length = 236
#
# Score = 33.1 bits (74), Expect = 0.50
# Identities = 41/180 (22%), Positives = 78/180 (42%), Gaps = 11/180 (6%)
#
# Query: 11 ERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSDLPFEASIH 70
# + AS D+ A VS TL YF ++ + A++ + + P E ++H
# Sbjct: 57 DAASMNDITREAGVSKGTLYVYFENKEDLFTALIARERNIIVNSVKQSLNGNEPIEEALH 116
#
# Query: 71 TYARSLVNALRAEKTVRLGDIFALSLAEGLTD--PTYGRPALEHIVEPTLQALEARLAVH 128
# + LV ++ ++ T+R A+ G+ D P + E L+A L
# Sbjct: 117 AFGVKLVTSITSDYTIR-----AMRTVLGVIDRMPRLAQRFFTATPENGYTVLKAYLDQQ 171
#
# Query: 129 IARGEMRADVDPRMAALQLVSPLLLACLHQDQLEGA--HLRAMNLEKLIATTCGAFLRAF 186
# ++ G + + D +AA Q + L +A + + +L G + A ++EK + + FL A+
# Sbjct: 172 VSAGMLSIE-DTEIAAKQFID-LAMAGMFKGRLFGMCDAVSAESIEKNVRSAIRVFLAAY 229
#
#
# >CC2876
# Length = 184
#
# Score = 32.3 bits (72), Expect = 0.82
# Identities = 18/42 (42%), Positives = 26/42 (61%)
#
# Query: 4 HLMARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLE 45
# HL++ G +AS R LAAAA VS L +YF D+ V+ ++
# Sbjct: 18 HLLSTGLSQASLRQLAAAAGVSDRMLLYYFADKTEVLALAMQ 59
#
#
# >PA2885
# Length = 198
#
# Score = 32.0 bits (71), Expect = 0.98
# Identities = 13/42 (30%), Positives = 27/42 (63%)
#
# Query: 7 ARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECL 48
# ++G ER + RDLA+A + ++ H+F + ++ +V+EE +
# Sbjct: 30 SKGYERTTVRDLASAVGIQSGSIFHHFKSKDEILRSVMEETI 71
#
#
# >PM1135
# Length = 187
#
# Score = 31.6 bits (70), Expect = 1.3
# Identities = 18/63 (28%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
#
# Query: 4 HLMARGG-ERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSD 62
# HLMA+ G S +A AA++SP T+ YF + +++ ++ R + L+
# Sbjct: 18 HLMAKEGLHNLSMHKIAKAAKISPGTIYIYFKCKEELLEQFAQQVFARFQRALEKNHDDR 77
#
# Query: 63 LPF 65
# PF
# Sbjct: 78 QPF 80
#
#
# >MA2948
# Length = 230
#
# Score = 31.2 bits (69), Expect = 1.5
# Identities = 13/38 (34%), Positives = 24/38 (62%)
#
# Query: 7 ARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVL 44
# +RG + S ++A+ E+S P L +YF D+ ++ AV+
# Sbjct: 28 SRGYDNVSMDEIASEVELSKPALYYYFKDKESLFFAVV 65
#
#
# >SMc04134
# Length = 225
#
# Score = 30.8 bits (68), Expect = 2.1
# Identities = 23/61 (37%), Positives = 29/61 (46%), Gaps = 2/61 (3%)
#
# Query: 9 GGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSDLPFEAS 68
# GG R +A A ++ L HYFGD+ + AVLEE R + LSDL E
# Sbjct: 47 GGARVD--AIAERAGINKRMLYHYFGDKEQLYLAVLEEAYVGIRTAEKSLNLSDLEPEQG 104
#
# Query: 69 I 69
# I
# Sbjct: 105 I 105
#
#
# >BS_yhgD
# Length = 191
#
# Score = 30.8 bits (68), Expect = 2.1
# Identities = 22/80 (27%), Positives = 36/80 (44%), Gaps = 4/80 (5%)
#
# Query: 10 GERASFRDLAAA-AEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSDLPFEAS 68
# G +A+ DL A A V T+ +F ++ + D + L+ + D LPF +
# Sbjct: 21 GYKATTMDLVAKLANVGKGTIYTFFKNKEELFDEIFTTLLKEMKQKADEAMEPSLPFHEN 80
#
# Query: 69 IHTYARSLVNALRAEKTVRL 88
# +H R+L L KT +L
# Sbjct: 81 VH---RALFAILEFRKTHQL 97
#
#
# >mlr7466
# Length = 202
#
# Score = 30.4 bits (67), Expect = 2.5
# Identities = 14/38 (36%), Positives = 24/38 (62%)
#
# Query: 9 GGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEE 46
# G AS D A+A ++ L H+FGD++ +++AV+ E
# Sbjct: 28 GYAEASMDDFTASAGLTRGALYHHFGDKKGLLEAVIAE 65
#
#
# >Cgl1504
# Length = 188
#
# Score = 30.4 bits (67), Expect = 3.1
# Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
#
# Query: 9 GGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSDLPFEAS 68
# G E A+ R L A S + H+FGD+ + A+ E DA R++++ E
# Sbjct: 28 GYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALARE---------DAARMAEVVSENG 78
#
# Query: 69 IHTYARSLVNALRAEKTVRLGDIFALSLAEGL-TDPTYGRPALEHIVEPTL-QALEARLA 126
# + R ++ + + L +++ L TDP + ++H + L +A+ RL+
# Sbjct: 79 LVEVMRGMLEDPERYDWMSV----RLEISKQLRTDPVFRAKWIDH--QSVLDEAVRVRLS 132
#
# Query: 127 VHIARGEMRADV 138
# ++ +G+MR DV
# Sbjct: 133 RNVDKGQMRTDV 144
#
#
# >MT0343
# Length = 200
#
# Score = 30.0 bits (66), Expect = 3.4
# Identities = 16/43 (37%), Positives = 25/43 (57%)
#
# Query: 5 LMARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEEC 47
# L RG S RD+A AA V+ ++ ++FG + A++D L C
# Sbjct: 19 LRERGYGNTSSRDIARAAGVNIASINYHFGSKDALLDDALGRC 61
#
#
# >Rv0328
# Length = 200
#
# Score = 30.0 bits (66), Expect = 3.4
# Identities = 16/43 (37%), Positives = 25/43 (57%)
#
# Query: 5 LMARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEEC 47
# L RG S RD+A AA V+ ++ ++FG + A++D L C
# Sbjct: 19 LRERGYGNTSSRDIARAAGVNIASINYHFGSKDALLDDALGRC 61
#
#
# >lin2558
# Length = 202
#
# Score = 30.0 bits (66), Expect = 3.4
# Identities = 13/41 (31%), Positives = 24/41 (57%)
#
# Query: 6 MARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEE 46
# M +G S R++A A+++ P L H+F D+ ++ V+ E
# Sbjct: 27 MEKGYRAVSTREIAKIAKITQPALYHHFEDKESLYIEVVRE 67
#
#
# >DR0074
# Length = 197
#
# Score = 30.0 bits (66), Expect = 3.4
# Identities = 16/41 (39%), Positives = 24/41 (58%)
#
# Query: 8 RGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECL 48
# RG E + DLA + S PT+ YF A++DA+L++ L
# Sbjct: 28 RGFESVTVADLAHELQTSRPTIYSYFPSTEAILDALLQQRL 68
#
#
# >DRA0142
# Length = 224
#
# Score = 30.0 bits (66), Expect = 3.5
# Identities = 20/48 (41%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
#
# Query: 2 TLHLMARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLR 49
# TLH G + S R LAA VSP +L HYF + ++ V E LR
# Sbjct: 25 TLH--RDGLDGLSIRKLAAELGVSPKSLYHYFPTKEDLLQGVYSEILR 70
#
#
# >AGl676
# Length = 234
#
# Score = 30.0 bits (66), Expect = 4.1
# Identities = 19/62 (30%), Positives = 28/62 (44%)
#
# Query: 13 ASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSDLPFEASIHTY 72
# A ++AA S + +YFGD+ + VLEE + R G L DL A++
# Sbjct: 47 ARIDEIAARTRTSKRMIYYYFGDKEGLYKRVLEEAYAQVRGGEGNLELDDLEPIAALEKL 106
#
# Query: 73 AR 74
# R
# Sbjct: 107 CR 108
#
#
# >BH1836
# Length = 209
#
# Score = 29.6 bits (65), Expect = 4.4
# Identities = 13/43 (30%), Positives = 27/43 (62%)
#
# Query: 6 MARGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECL 48
# + +G E+ + R++A A S ++ YF D+R +++A+ +E L
# Sbjct: 20 LKKGYEQVTVREIAKEANCSHTSIYVYFEDKRKLLEALAKEPL 62
#
#
# >CC0334
# Length = 257
#
# Score = 29.6 bits (65), Expect = 4.4
# Identities = 23/71 (32%), Positives = 35/71 (48%), Gaps = 10/71 (14%)
#
# Query: 16 RDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSDLPFEASIHTYARS 75
# R +AA A V + +YFG +R + DAV LRR L+ R EAS++ Y ++
# Sbjct: 68 RQVAAEAGVDTALIHYYFGAKRELFDAVF---LRRAEI-LNQAR------EASMNAYVKA 117
#
# Query: 76 LVNALRAEKTV 86
# A+ E +
# Sbjct: 118 NAGAMTVEGVI 128
#
#
# >SMc01285
# Length = 336
#
# Score = 29.6 bits (65), Expect = 5.4
# Identities = 14/38 (36%), Positives = 21/38 (54%)
#
# Query: 78 NALRAEKTVRLGDIFALSLAEGLTDPTYGRPALEHIVE 115
# N L+ + V +GD+ + AE L P +GR +L I E
# Sbjct: 267 NCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKE 304
#
#
# >mlr0325
# Length = 336
#
# Score = 29.6 bits (65), Expect = 5.4
# Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
#
# Query: 78 NALRAEKTVRLGDIFALSLAEGLTDPTYGRPALEHIVEPTLQALEARLAVHI 129
# N L+ + V +GD+ + AE L P +GR +L I E L A+ L + +
# Sbjct: 267 NCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKE-VLAAMGLHLGMEV 317
#
#
# >AGc3518
# Length = 336
#
# Score = 29.3 bits (64), Expect = 5.6
# Identities = 14/38 (36%), Positives = 21/38 (54%)
#
# Query: 78 NALRAEKTVRLGDIFALSLAEGLTDPTYGRPALEHIVE 115
# N L+ + V +GD+ + AE L P +GR +L I E
# Sbjct: 267 NCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKE 304
#
#
# >BMEI0781
# Length = 337
#
# Score = 29.3 bits (64), Expect = 6.3
# Identities = 14/38 (36%), Positives = 21/38 (54%)
#
# Query: 78 NALRAEKTVRLGDIFALSLAEGLTDPTYGRPALEHIVE 115
# N L+ + V +GD+ + AE L P +GR +L I E
# Sbjct: 268 NCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKE 305
#
#
# >sll1286
# Length = 236
#
# Score = 29.3 bits (64), Expect = 6.5
# Identities = 13/33 (39%), Positives = 22/33 (66%)
#
# Query: 8 RGGERASFRDLAAAAEVSPPTLRHYFGDRRAVI 40
# +G E + +DLA AA V+ TL YF +++A++
# Sbjct: 58 KGYEGTTTKDLAQAANVAEGTLFRYFTNKKAIL 90
#
#
# >BH3415_1
# Length = 205
#
# Score = 29.3 bits (64), Expect = 6.8
# Identities = 15/70 (21%), Positives = 36/70 (51%)
#
# Query: 8 RGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSDLPFEA 67
# +G + + +++ A A+V+ T +YF + +++ ++ E+ L ++ + + LP
# Sbjct: 25 QGYDSTTVQEITAKAQVAKGTFFNYFPTKESIMRSLAEDRLHSVSVYMEQRHIQSLPILK 84
#
# Query: 68 SIHTYARSLV 77
# I TY L+
# Sbjct: 85 KIRTYLSYLL 94
#
#
# >CC2794
# Length = 255
#
# Score = 29.3 bits (64), Expect = 6.9
# Identities = 42/132 (31%), Positives = 60/132 (44%), Gaps = 7/132 (5%)
#
# Query: 9 GGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSDLPFEAS 68
# G E AS +A AA VS P L +Y+ + A+ AVLE+ L L +D P EA
# Sbjct: 78 GPEGASVEAIAQAAGVSKPNLLYYYPSKDALYLAVLEQGLALWLSPLGRFTEADDPAEAI 137
#
# Query: 69 IHTYARSLVNALRAEKTVRLGDIFALSLAEGLTDPTYGRPALEHIVEPTLQALEARLAVH 128
# A L + + RL FAL + G +P L ++ +A A +A
# Sbjct: 138 AALIAAKLEMSRDHPEVSRL---FALEMLRG---APLLKPVLSGPLKAVFEAKCAVIAAW 191
#
# Query: 129 IARGEMRADVDP 140
# +A G++ A VDP
# Sbjct: 192 VAAGKL-APVDP 202
#
#
# >mll4816
# Length = 244
#
# Score = 28.9 bits (63), Expect = 7.7
# Identities = 14/39 (35%), Positives = 23/39 (58%)
#
# Query: 8 RGGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEE 46
# +G E AS D+ A VS T+ YF ++ + +A++EE
# Sbjct: 48 KGFEAASMNDITREAGVSKGTIYVYFANKEELFEALIEE 86
#
#
# >DR1081
# Length = 233
#
# Score = 28.9 bits (63), Expect = 8.4
# Identities = 59/220 (26%), Positives = 85/220 (37%), Gaps = 32/220 (14%)
#
# Query: 5 LMARGG-ERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLSDL 63
# L AR G + S +D+A AA VS L YF + ++ A E + R A+ L L
# Sbjct: 23 LFARTGLDSVSAQDIARAAFVSRTNLYRYFPSKTHMLLAHFERTVGETR----AEALRRL 78
#
# Query: 64 PFEASIHTYARSLVNALRAEKTVRLGDIFAL--SLAEGLTDPTYGRPA------------ 109
# A+ + LV A+ VR + G + P G P+
# Sbjct: 79 SSGANPQVVWQ-LVTTRMADLGVRYRHLAGAVGQAVLGRSRPAEGTPSGPVPQELQTAQT 137
#
# Query: 110 LEHIVEPTLQALEARLAVHIARGEMRADVDPRMAALQLVSPLLLACLHQDQLEGAHLRAM 169
# L +VEP L A+ +G++R D D R A LV L++ LH +
# Sbjct: 138 LVSLVEPVLSAMR-------QQGKLRPDADTRFLAALLVDACLMSLLHGGHRNQREVLGD 190
#
# Query: 170 NLEKLIATTCGAFL-RAFAVSP----PVWGYDEPPEPVLA 204
# ++ GA A A+ P P DEPP P L+
# Sbjct: 191 WQDRFSLLMHGALAPNAPALPPDGQRPPASSDEPPTPPLS 230
#
#
# >SMc04348
# Length = 215
#
# Score = 28.9 bits (63), Expect = 8.9
# Identities = 23/88 (26%), Positives = 44/88 (49%), Gaps = 2/88 (2%)
#
# Query: 3 LHLMARGGERA-SFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRP-GLDAQRL 60
# L L+ GGE+A + +A AA S +L +FGDR ++ A++ + R + A +L
# Sbjct: 28 LRLLVDGGEKALTTAGVARAANCSKESLYKWFGDREGLLSAMIAFQASKVRTLDVSAAKL 87
#
# Query: 61 SDLPFEASIHTYARSLVNALRAEKTVRL 88
# + +A+ L++ L + ++ L
# Sbjct: 88 DGGSLRVHLVAFAKDLLDVLAGDVSLAL 115
#
#
# >aroH
# Length = 348
#
# Score = 28.9 bits (63), Expect = 9.0
# Identities = 28/123 (22%), Positives = 51/123 (40%), Gaps = 6/123 (4%)
#
# Query: 4 HLMARGGERASFR--DLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDAQRLS 61
# H++ RGG++ ++ D+AAA + TL + V+D C ++ R L+
# Sbjct: 229 HIIMRGGKKPNYHADDIAAACD----TLHEFDLPEHLVVDFSHGNCQKQHRRQLEVCEDI 284
#
# Query: 62 DLPFEASIHTYARSLVNALRAEKTVRLGDIFALSLAEGLTDPTYGRPALEHIVEPTLQAL 121
# A + + E T ++ L+ + +TDP G E +VE A+
# Sbjct: 285 CQQIRNGSTAIAGIMAESFLREGTQKIVGSQPLTYGQSITDPCLGWEDTERLVEKLASAV 344
#
# Query: 122 EAR 124
# + R
# Sbjct: 345 DTR 347
#
#
# >AGl1093
# Length = 201
#
# Score = 28.5 bits (62), Expect = 9.7
# Identities = 14/38 (36%), Positives = 22/38 (57%)
#
# Query: 9 GGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEE 46
# G AS D A A ++ L H+FGD++ ++ AV+ E
# Sbjct: 32 GYAEASMDDFTAGAGLTRGALYHHFGDKKGLLMAVVAE 69
#
#
# >VC1741
# Length = 224
#
# Score = 28.5 bits (62), Expect = 9.8
# Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
#
# Query: 9 GGERASFRDLAAAAEVSPPTLRHYFGDRRAVIDAVLEECLRRGRPGLDA--QRLSDLP-- 64
# G S R + + A V+ ++ ++FGD++ ++ AVL L P + +RL++
# Sbjct: 39 GFNDTSLRTITSKAGVNLASVNYHFGDKKTLVRAVLNRYLEAFMPEMKQSLERLNERDDY 98
#
# Query: 65 -----FEASIHTYARSLVNALRAEKTVRLGDIFALSLAEGLTD 102
# FEA + RSL + LR T R F L + G TD
# Sbjct: 99 DMAEVFEA-LRAPLRSL-SELRPNGTSR----FMLLIGRGYTD 135
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.323 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,466,381
Number of Sequences: 192987
Number of extensions: 823899
Number of successful extensions: 2720
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2672
Number of HSP's gapped (non-prelim): 83
length of query: 209
length of database: 59,019,183
effective HSP length: 105
effective length of query: 104
effective length of database: 38,755,548
effective search space: 4030576992
effective search space used: 4030576992
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
S2: 63 (28.9 bits)