Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss308519	KWOK|OVLP-000621-361966		rev/B	C/T	ttcgtatctacctatcctgttcattgccag	gcagctccctaacccaggtttccatcatct	06/30/00	10/10/03	79	Genomic			97 %
ss309420	KWOK|OVLP-000621-366571		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	06/30/00	10/10/03	79	Genomic			97 %
ss437387	KWOK|OVLP-000621-344117		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	06/30/00	10/10/03	92	Genomic			99 %
ss440473	KWOK|OVLP-000621-350926		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	06/30/00	10/10/03	92	Genomic			99 %
ss622345	SC_JCM|AC011851.3_151723		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	07/12/00	10/10/03	92	Genomic			unknown
ss1070457	KWOK|OVLP-000804-9765		rev/B	C/T	ttcgtatctacctatcctgttcattgccag	gcagctccctaacccaggtttccatcatct	09/02/00	10/10/03	92	Genomic			99 %
ss1071898	KWOK|OVLP-000804-16141		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	09/02/00	10/10/03	92	Genomic			99 %
ss1200490	KWOK|OVLP-000804-20722		rev/B	C/T	ttcgtatctacctatcctgttcattgccag	gcagctccctaacccaggtttccatcatct	09/02/00	10/10/03	92	Genomic			97 %
ss1201170	KWOK|OVLP-000804-27739		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	09/02/00	10/10/03	92	Genomic			97 %
ss1730459	KWOK|OVLP-000925-307542		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	10/05/00	10/10/03	92	Genomic			97 %
ss1730968	KWOK|OVLP-000925-321671		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	10/05/00	10/10/03	92	Genomic			97 %
ss1731371	KWOK|OVLP-000925-332281		rev/B	C/T	ttcgtatctacctatcctgttcattgccag	gcagctccctaacccaggtttccatcatct	10/05/00	10/10/03	92	Genomic			97 %
ss1732174	KWOK|OVLP-000925-340297		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	10/05/00	10/10/03	92	Genomic			97 %
ss6484848	WI_SSAHASNP|NT_007299.11_12119335		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	02/12/03	10/10/03	111	Genomic			unknown
ss22484179	SSAHASNP|WGSA-200403-chr6.chr6.NT_007299.12_18463721		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	03/21/04	03/21/04	121	Genomic			unknown
ss23395642	PERLEGEN|afd4596971		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	08/10/04	09/13/04	123	Genomic			unknown
ss42759446	ABI|hCV3181674		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	07/18/05	07/18/05	126	Genomic			unknown
ss84779849	HGSV|Cor18517_SNV_20070510.chr6_80700269		fwd/T	A/G	agatgatggaaacctgggttagggagctgc	ctggcaatgaacaggataggtagatacgaa	12/06/07	12/08/07	130	Genomic			unknown

Fasta sequence   (Legend)

 GCAGACAGGG AGAAAAGTCT TTTTTCAGGG GGCAGAATTA GAAAGACCTA CAAAAGTTCC
 CTTAGTACAA TGACAAGATA TAAGCAAATG AGAATATCTG AATACCCTGA GAGAACTGAA
 TGTATAAGCA GCCCAGAAGC AAGAAATAAA ACAATCTGGA AACTAAGCAG ACATGATGAA
 GAGGATATAT ACAAAGGAAG AGGGCAGGAA ATGACTGTGA TGATCCCCTA GGAGGTCTTA
 CAAACTACAC TGAGGATGCT GGAATTTATC ATGTAGATAA TGAAGAGATA tttgattgtt
 tttgtttgtt tgtttgtttg tttgtttgtt ttgggactgg gtctggctct gttgcccaga
 ctagaatgca gtggcatgat ctcagctcac tgcagcctcc acctccaggg cttaagcgat
 tttcgtgcct cagccaccca agtagcttgg actacaggtg catgccacaa cacccagcta
 atttttgtgt tttttgtaga gacgaggatt cgccatgttg ctcaggctgg ccctgaaccc
 ctgagctcaa gcaacccacc tacctcagcc tcccaaagtg ctgggattac agtcatgagc
 caccacaccc agccAGTTTT GGCTTTCAAA AGATCATGGT AGAGGCAGTG GGGTGTGGAC
 TGAGGGGAAG GGGATATGTC AAGAGGCAGG AAAACCAACT GCATcagtgg ttctcaatac
 ttgtctacca ctagactacc catgtaagaa tcatgtgctt gctaaaatta tagattccca
 ggtcctactg aatcaaaatc tctgcgggtg ggactggaca ctatgatctg agctccccca
 ggtgattctg acaggcaggc agacttggag accactAGGA CATAagagat gatggaaacc
 tgggttaggg agctgc
 R
 ctggcaatga acaggatagg tagatacgaa ggtttcgtgg gtaaaatcta cagactccac
 gactgttgtg gatgtgagag aagagagtca aagaaaagtt caggattact cccagatttc
 tggtctatct ggcaacacag acagtgaagt catgatccat aacagagtaa aggaagagga
 gcagatctgg gagaaactga tcaggtgaat gttgaacatc tcgcatctga gctacttttg
 ggacagctag gtggaggcgt ccagtagcct ctggagctgc agaggaactg ccagggctgt
 ggacacaCAG AGGGGTCACT GACAATGACA ATCACACCAG AGTTTGAGGT CACAAGGGAA
 GGAGCATGTA CAGTGAGAGA ATAACATGAA AAAGGAATGA CTCTGAGGAC AGTTGAAGAT
 GAGTGGGTGA AATGGCAGCA AATAAGCCAG AGAGGCAGGA AAAGAGAAAA CCATGTCACA
 AAGACCGAGA AATTTCCAAA AGGAAAGGGT GCAGAACAGA ATCTATAGCT GGAAAACCAA
 ctgttcttcc tttttctttt tttaatgagg aaatagttac ttcatagggt taagatgtga
 taactaaatg aaccaaagta tgcgaagGTT CCTAGCACAC ATGGATACCA CGACGTCATG
 CATTCCCTTC TGCTGCAGCC TATTCTCTCC CAAATTTACA TCTTCACAAA GTATGTCTCA
 TGTCAGAGAT AATCTGAGC

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_007299->NM_022726 function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss23395642	AFD_EUR_PANEL	European	44	IG	0.727	0.227	0.045	0.527	0.841	0.159
	AFD_AFR_PANEL	African American	44	IG	0.227	0.455	0.318	0.752	0.455	0.545
	AFD_CHN_PANEL	Asian	46	IG	0.739	0.261		0.479	0.870	0.130

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN