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GEO accession:
Sample GSM24194
Query DataSets for GSM24194
Status
Public on May 27, 2005
Title
TPPBS023
Sample type
RNA
Channel 1
Source Name
Ref 1.2
Organism(s)
Mus musculus
Extracted molecule
total RNA
Channel 2
Source Name
023
Organism(s)
Mus musculus
Extracted molecule
total RNA
Description
Total RNA from tracheal perfusate
1 round amplification (Ambion's MessageAmp aRNA Kit)
PBS
Submission date
May 27, 2004
Contact name
Michael E. Salazar
Phone
(415) 514-4371
URL
http://arrays.ucsf.edu
Organization name
University of California, San Francisco
Department
Lab
Functional Genomics Core Laboratories
Street address
1550 Fourth Street, RM 545
City
San Francisco
State/province
CA
ZIP/Postal code
94158
Country
USA
Platform ID
GPL1089
Series (1)
GSE1438
Differential Gene Expression due to direct effects of IL-13 on Airway Epithelial Cells
Data table header descriptions
ID_REF
X
Y
Dia.
F635 Median
F635 Mean
F635 SD
B635
B635 Median
B635 Mean
B635 SD
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
B532
B532 Median
B532 Mean
B532 SD
% > B532+1SD
% > B532+2SD
F532 % Sat.
VALUE
log ratio (log2 of PRE_VALUE)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R™ (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
Autoflag
PRE_VALUE
Ratio of Medians (635/532)
Data table
ID_REF
X
Y
Dia.
F635 Median
F635 Mean
F635 SD
B635
B635 Median
B635 Mean
B635 SD
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
B532
B532 Median
B532 Mean
B532 SD
% > B532+1SD
% > B532+2SD
F532 % Sat.
VALUE
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R™ (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
Autoflag
PRE_VALUE
1
1890
9140
120
269
306
194
93
93
100
78
80
56
0
360
363
116
193
193
201
81
81
53
0
0.0758753
1.253
1.086
1.133
2.473
1.665
0.455
120
661
100
343
383
0.076
176
167
213
170
36743
43598
2.641
2
0
0
0
1.054
2
2080
9140
120
2624
2717
3113
91
91
98
46
98
97
0
3183
3012
1390
192
192
198
66
91
90
0
-0.2395663
0.931
0.81
0.894
2.228
1.6
0.449
120
614
100
5524
5446
-0.24
2533
2991
2626
2820
326011
361470
56.935
42.636
0
0
0
0.847
3
2280
9140
110
1096
1155
461
91
91
102
56
100
100
0
1280
1278
300
192
192
203
95
100
97
0
-0.1140353
0.98
0.874
0.987
1.612
3.55
0.259
80
552
100
2093
2150
-0.114
1005
1088
1064
1086
92417
102241
18.804
11.316
0
0
0
0.924
4
2480
9140
120
2257
2143
1051
92
92
101
57
96
94
0
2378
2186
1043
189
189
198
85
90
86
0
-0.0159583
1.027
1.028
1.154
2.185
1.018
0.857
120
648
100
4354
4048
-0.016
2165
2189
2051
1997
257189
262320
35.825
23.388
0
0
0
0.989
5
2680
9130
110
640
1301
4106
95
95
118
209
92
81
0
656
782
921
190
190
200
89
91
90
0
0.2265093
2.037
1.275
1.49
2.44
22.28
0.026
80
535
100
1011
1798
0.226
545
466
1206
592
104062
62539
5.66
6.539
0
0
0
1.17
6
2870
9140
120
1851
2890
6375
96
96
132
239
87
85
0
2125
2159
1298
189
189
223
255
85
85
0
-0.1408263
1.418
0.964
1.115
2.605
5.585
0.278
120
646
100
3691
4764
-0.142
1755
1936
2794
1970
346806
259051
11.54
7.592
0
0
0
0.907
7
3120
9090
190
402
1113
3082
100
100
181
495
37
17
0
293
718
1284
190
190
251
295
42
20
0
1.5518853
1.919
1.23
1.623
5.634
3.36
0.263
256
1044
100
405
1541
1.552
302
103
1013
528
284843
183795
1.883
1.583
-100
0
0
2.932
8
3240
9100
200
303
1941
5869
97
97
169
469
33
21
0
240
1199
4061
190
190
239
258
36
19
0
2.0426443
1.828
1.528
1.954
5.017
2.736
0.169
316
1177
100
256
2853
2.043
206
50
1844
1009
613408
378869
3.778
3.721
-100
0
0
4.12
9
3480
9140
120
888
2575
3921
95
95
120
183
90
87
0
783
1240
1330
185
185
214
437
77
25
0
0.4070813
2.351
1.355
1.658
2.898
3.518
0.379
120
587
100
1391
3535
0.407
793
598
2480
1055
308950
148753
13.415
2.348
-100
0
0
1.326
10
3670
9130
120
247
558
902
92
92
100
74
73
50
0
296
409
564
182
182
203
418
10
3
0
0.4436073
2.053
1.312
1.611
3.829
3.032
0.104
120
614
100
269
693
0.443
155
114
466
227
66930
49038
6.189
0.493
-100
0
0
1.36
11
3870
9130
110
611
2123
7602
92
92
98
51
100
100
0
539
715
608
180
180
185
42
95
93
0
0.5320683
3.796
1.307
1.716
2.728
29.204
0.078
80
562
100
878
2566
0.532
519
359
2031
535
169846
57216
39.706
12.619
-100
0
0
1.446
12
4070
9130
110
425
431
115
89
89
92
28
100
100
0
513
524
137
176
176
180
48
96
93
0
-0.0043353
0.983
0.883
1.073
2.214
0.93
0.678
80
588
100
673
690
-0.004
336
337
342
348
34519
41906
12.107
7.167
0
0
0
0.997
13
4270
9130
110
615
602
119
89
89
91
26
100
100
0
738
700
176
175
175
179
51
93
93
0
-0.0985063
0.977
0.941
0.993
1.626
0.886
0.813
80
578
100
1089
1038
-0.098
526
563
513
525
48149
56029
19.654
10.216
0
0
0
0.934
14
4480
9130
120
1269
1171
500
87
87
90
26
92
91
0
2079
1811
882
174
174
180
106
84
82
0
-0.6896603
0.662
0.644
0.842
2.914
0.616
0.876
120
675
100
3087
2721
-0.689
1182
1905
1084
1637
140516
217267
41.577
15.387
0
0
0
0.62
15
4680
9130
110
188
187
40
85
85
88
27
96
87
0
308
311
55
172
172
180
118
62
2
0
-0.4016353
0.734
0.754
0.761
2.649
0.667
0.515
80
538
100
239
241
-0.401
103
136
102
139
14976
24904
3.667
1.11
0
0
0
0.757
16
4870
9130
120
567
524
209
87
87
90
26
90
90
0
725
642
265
172
172
174
32
88
85
0
-0.2042333
0.93
0.916
1.033
2.578
0.869
0.806
120
628
100
1033
907
-0.204
480
553
437
470
62885
77083
16.692
14.625
0
0
0
0.868
17
5070
9130
120
549
533
231
88
88
90
26
91
89
0
559
545
248
171
171
173
29
85
81
0
0.2485353
1.19
1.115
1.314
2.564
1.103
0.644
120
642
100
849
819
0.249
461
388
445
374
63910
65416
17.038
12.828
0
0
0
1.188
18
5270
9130
100
132
135
37
87
87
89
24
70
47
0
217
219
32
174
174
175
28
67
33
0
0.0662613
1.067
0.972
1.119
3.036
0.844
0.185
80
500
100
88
93
0.066
45
43
48
45
10810
17493
1.917
1.571
0
0
0
1.047
19
5480
9130
120
1247
1224
478
88
88
90
25
98
95
0
1477
1410
585
172
172
173
28
92
90
0
-0.1713683
0.918
0.895
1.042
2.327
0.878
0.75
120
694
100
2464
2374
-0.171
1159
1305
1136
1238
146923
169201
45.36
44.179
0
0
0
0.888
20
5680
9130
100
228
226
53
90
90
90
26
98
92
0
332
337
55
174
174
175
28
100
97
0
-0.1959463
0.834
0.797
0.802
1.717
0.803
0.555
80
512
100
296
299
-0.195
138
158
136
163
18045
26997
5.231
5.786
0
0
0
0.873
Total number of rows:
19152
Table truncated, full table size
3885 Kbytes
.
Supplementary data files not provided
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