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Sample GSM24194 Query DataSets for GSM24194
Status Public on May 27, 2005
Title TPPBS023
Sample type RNA
 
Channel 1
Source Name Ref 1.2
Organism(s) Mus musculus
Extracted molecule total RNA
 
Channel 2
Source Name 023
Organism(s) Mus musculus
Extracted molecule total RNA
 
 
Description Total RNA from tracheal perfusate
1 round amplification (Ambion's MessageAmp aRNA Kit)
PBS
 
Submission date May 27, 2004
Contact name Michael E. Salazar
Phone (415) 514-4371
URL http://arrays.ucsf.edu
Organization name University of California, San Francisco
Department
Lab Functional Genomics Core Laboratories
Street address 1550 Fourth Street, RM 545
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platform ID GPL1089
Series (1)
GSE1438 Differential Gene Expression due to direct effects of IL-13 on Airway Epithelial Cells

Data table header descriptions
ID_REF
X
Y
Dia.
F635 Median
F635 Mean
F635 SD
B635
B635 Median
B635 Mean
B635 SD
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
B532
B532 Median
B532 Mean
B532 SD
% > B532+1SD
% > B532+2SD
F532 % Sat.
VALUE log ratio (log2 of PRE_VALUE)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R™ (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
Autoflag
PRE_VALUE Ratio of Medians (635/532)

Data table
ID_REF X Y Dia. F635 Median F635 Mean F635 SD B635 B635 Median B635 Mean B635 SD % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD B532 B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. VALUE Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R™ (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) Log Ratio (635/532) F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags Normalize Autoflag PRE_VALUE
1 1890 9140 120 269 306 194 93 93 100 78 80 56 0 360 363 116 193 193 201 81 81 53 0 0.0758753 1.253 1.086 1.133 2.473 1.665 0.455 120 661 100 343 383 0.076 176 167 213 170 36743 43598 2.641 2 0 0 0 1.054
2 2080 9140 120 2624 2717 3113 91 91 98 46 98 97 0 3183 3012 1390 192 192 198 66 91 90 0 -0.2395663 0.931 0.81 0.894 2.228 1.6 0.449 120 614 100 5524 5446 -0.24 2533 2991 2626 2820 326011 361470 56.935 42.636 0 0 0 0.847
3 2280 9140 110 1096 1155 461 91 91 102 56 100 100 0 1280 1278 300 192 192 203 95 100 97 0 -0.1140353 0.98 0.874 0.987 1.612 3.55 0.259 80 552 100 2093 2150 -0.114 1005 1088 1064 1086 92417 102241 18.804 11.316 0 0 0 0.924
4 2480 9140 120 2257 2143 1051 92 92 101 57 96 94 0 2378 2186 1043 189 189 198 85 90 86 0 -0.0159583 1.027 1.028 1.154 2.185 1.018 0.857 120 648 100 4354 4048 -0.016 2165 2189 2051 1997 257189 262320 35.825 23.388 0 0 0 0.989
5 2680 9130 110 640 1301 4106 95 95 118 209 92 81 0 656 782 921 190 190 200 89 91 90 0 0.2265093 2.037 1.275 1.49 2.44 22.28 0.026 80 535 100 1011 1798 0.226 545 466 1206 592 104062 62539 5.66 6.539 0 0 0 1.17
6 2870 9140 120 1851 2890 6375 96 96 132 239 87 85 0 2125 2159 1298 189 189 223 255 85 85 0 -0.1408263 1.418 0.964 1.115 2.605 5.585 0.278 120 646 100 3691 4764 -0.142 1755 1936 2794 1970 346806 259051 11.54 7.592 0 0 0 0.907
7 3120 9090 190 402 1113 3082 100 100 181 495 37 17 0 293 718 1284 190 190 251 295 42 20 0 1.5518853 1.919 1.23 1.623 5.634 3.36 0.263 256 1044 100 405 1541 1.552 302 103 1013 528 284843 183795 1.883 1.583 -100 0 0 2.932
8 3240 9100 200 303 1941 5869 97 97 169 469 33 21 0 240 1199 4061 190 190 239 258 36 19 0 2.0426443 1.828 1.528 1.954 5.017 2.736 0.169 316 1177 100 256 2853 2.043 206 50 1844 1009 613408 378869 3.778 3.721 -100 0 0 4.12
9 3480 9140 120 888 2575 3921 95 95 120 183 90 87 0 783 1240 1330 185 185 214 437 77 25 0 0.4070813 2.351 1.355 1.658 2.898 3.518 0.379 120 587 100 1391 3535 0.407 793 598 2480 1055 308950 148753 13.415 2.348 -100 0 0 1.326
10 3670 9130 120 247 558 902 92 92 100 74 73 50 0 296 409 564 182 182 203 418 10 3 0 0.4436073 2.053 1.312 1.611 3.829 3.032 0.104 120 614 100 269 693 0.443 155 114 466 227 66930 49038 6.189 0.493 -100 0 0 1.36
11 3870 9130 110 611 2123 7602 92 92 98 51 100 100 0 539 715 608 180 180 185 42 95 93 0 0.5320683 3.796 1.307 1.716 2.728 29.204 0.078 80 562 100 878 2566 0.532 519 359 2031 535 169846 57216 39.706 12.619 -100 0 0 1.446
12 4070 9130 110 425 431 115 89 89 92 28 100 100 0 513 524 137 176 176 180 48 96 93 0 -0.0043353 0.983 0.883 1.073 2.214 0.93 0.678 80 588 100 673 690 -0.004 336 337 342 348 34519 41906 12.107 7.167 0 0 0 0.997
13 4270 9130 110 615 602 119 89 89 91 26 100 100 0 738 700 176 175 175 179 51 93 93 0 -0.0985063 0.977 0.941 0.993 1.626 0.886 0.813 80 578 100 1089 1038 -0.098 526 563 513 525 48149 56029 19.654 10.216 0 0 0 0.934
14 4480 9130 120 1269 1171 500 87 87 90 26 92 91 0 2079 1811 882 174 174 180 106 84 82 0 -0.6896603 0.662 0.644 0.842 2.914 0.616 0.876 120 675 100 3087 2721 -0.689 1182 1905 1084 1637 140516 217267 41.577 15.387 0 0 0 0.62
15 4680 9130 110 188 187 40 85 85 88 27 96 87 0 308 311 55 172 172 180 118 62 2 0 -0.4016353 0.734 0.754 0.761 2.649 0.667 0.515 80 538 100 239 241 -0.401 103 136 102 139 14976 24904 3.667 1.11 0 0 0 0.757
16 4870 9130 120 567 524 209 87 87 90 26 90 90 0 725 642 265 172 172 174 32 88 85 0 -0.2042333 0.93 0.916 1.033 2.578 0.869 0.806 120 628 100 1033 907 -0.204 480 553 437 470 62885 77083 16.692 14.625 0 0 0 0.868
17 5070 9130 120 549 533 231 88 88 90 26 91 89 0 559 545 248 171 171 173 29 85 81 0 0.2485353 1.19 1.115 1.314 2.564 1.103 0.644 120 642 100 849 819 0.249 461 388 445 374 63910 65416 17.038 12.828 0 0 0 1.188
18 5270 9130 100 132 135 37 87 87 89 24 70 47 0 217 219 32 174 174 175 28 67 33 0 0.0662613 1.067 0.972 1.119 3.036 0.844 0.185 80 500 100 88 93 0.066 45 43 48 45 10810 17493 1.917 1.571 0 0 0 1.047
19 5480 9130 120 1247 1224 478 88 88 90 25 98 95 0 1477 1410 585 172 172 173 28 92 90 0 -0.1713683 0.918 0.895 1.042 2.327 0.878 0.75 120 694 100 2464 2374 -0.171 1159 1305 1136 1238 146923 169201 45.36 44.179 0 0 0 0.888
20 5680 9130 100 228 226 53 90 90 90 26 98 92 0 332 337 55 174 174 175 28 100 97 0 -0.1959463 0.834 0.797 0.802 1.717 0.803 0.555 80 512 100 296 299 -0.195 138 158 136 163 18045 26997 5.231 5.786 0 0 0 0.873

Total number of rows: 19152

Table truncated, full table size 3885 Kbytes.




Supplementary data files not provided

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