proteins
| 14 proteins |
S | COG3439 | Uncharacterized conserved protein | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Brucella melitensis (Rhizobiales | Alphaproteobacteria) | ||||
| BMEI0634_2 | ||||
126 letters (r) 0
0 605 = ||| 1 BMEI0634_2 (126) = 3
-6 160 = 4 SSO0995 (123) = 37
3
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BMEI0634_2
(126 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
BMEI0634_2 237 2e-63
SSO0995 66 1e-11
NMA0993 65 2e-11
NMB0783 65 3e-11
STM4505 64 7e-11
TP0895 42 3e-04
TVN0121 35 0.023
BMEI0171 30 0.64
MJ1396 30 0.67
MA3947 30 1.1
BB0389 30 1.2
CC0789 28 2.4
SMc00776_1 28 3.3
BB0127 28 3.7
RSc0068 28 4.5
PAE0710 28 4.8
PH0147 27 4.9
MA0879 27 5.2
ECs3736 27 6.3
BS_trpA 27 6.4
RSc1252 27 6.5
SP0267 27 6.8
Cgl0188 27 7.5
SMb21065 27 7.5
ygeQ 27 7.7
ECs3110 27 7.8
Z3480 27 7.8
NMB0180 27 7.9
yfaQ 27 8.0
VNG0498C 27 8.1
PM0616 27 9.3
lin1197 27 9.5
# >BMEI0634_2
# Length = 126
#
# Score = 237 bits (605), Expect = 2e-63
# Identities = 126/126 (100%), Positives = 126/126 (100%)
#
# Query: 1 TVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVL 60
# TVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVL
# Sbjct: 1 TVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVL 60
#
# Query: 61 MQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVT 120
# MQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVT
# Sbjct: 61 MQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVT 120
#
# Query: 121 KYAAGD 126
# KYAAGD
# Sbjct: 121 KYAAGD 126
#
#
# >SSO0995
# Length = 123
#
# Score = 66.2 bits (160), Expect = 1e-11
# Identities = 29/73 (39%), Positives = 43/73 (58%)
#
# Query: 10 ETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQDKRTIGL 69
# E ++ + + KS G VF +DH A++ GL L PT +I FGNP GT+LM R +
# Sbjct: 13 ECVKTLIERIKSSGAEVFAIIDHSENARKVGLSLEPTIVIYFGNPSVGTLLMLHNRHVAY 72
#
# Query: 70 DLPIRALAWEDGS 82
# +LP+R L W + +
# Sbjct: 73 ELPLRFLVWSENN 85
#
#
# >NMA0993
# Length = 159
#
# Score = 65.1 bits (157), Expect = 2e-11
# Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
#
# Query: 1 TVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVL 60
# T+ S++S ET+ R+ KS GM++F +DH A+ GL + P ++I+FG P+ GT L
# Sbjct: 38 TLTSKYSFDETVSRLETAIKSKGMDIFAVIDHQEAARRNGLTMQPAKVIVFGTPKAGTPL 97
#
# Query: 61 MQDKRTIGLDLPIRALAWEDGSGKVWLTVND 91
# M L LP+R L E GKV D
# Sbjct: 98 MVKDPAFALQLPLRVLVTET-DGKVRAAYTD 127
#
#
# >NMB0783
# Length = 159
#
# Score = 64.7 bits (156), Expect = 3e-11
# Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
#
# Query: 1 TVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVL 60
# T+ S++S ET+ R+ KS GM++F +DH A+ GL + P ++I+FG P+ GT L
# Sbjct: 38 TLTSKYSFDETVSRLETAIKSKGMDIFAVIDHQEAARRNGLTMQPAKVIVFGTPKAGTPL 97
#
# Query: 61 MQDKRTIGLDLPIRALAWEDGSGKVWLTVND 91
# M L LP+R L E GKV D
# Sbjct: 98 MVKDPAFALQLPLRVLVTET-DGKVRAAYTD 127
#
#
# >STM4505
# Length = 153
#
# Score = 63.5 bits (153), Expect = 7e-11
# Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
#
# Query: 4 SRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQD 63
# S + +T R+ G+ +F DH A+ L +PPT +++FGNP+ GT LM
# Sbjct: 37 SAYDYLQTRARLMHAVADHGLVLFGEFDHARAAQNVNLKMPPTTVLVFGNPKGGTPLMLA 96
#
# Query: 64 KRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAM 112
# + LDLP R L + G+ ++ + PA QR+ L + A+K +
# Sbjct: 97 HPELALDLPFRVLISQQADGRTLVSYH-PAETLQRYGLDAADIQALKKL 144
#
#
# >TP0895
# Length = 168
#
# Score = 41.6 bits (96), Expect = 3e-04
# Identities = 21/73 (28%), Positives = 40/73 (54%)
#
# Query: 1 TVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVL 60
# T+ SR+ T++ + + ++ G +VF VD+ A + L + P +L++ G P+ GT L
# Sbjct: 48 TITSRYPFDRTMQLLESALRTQGFSVFGIVDYREAAHKQNLDIQPAKLMVVGFPKIGTPL 107
#
# Query: 61 MQDKRTIGLDLPI 73
# M + L +P+
# Sbjct: 108 MLEDPYFLLRVPL 120
#
#
# >TVN0121
# Length = 129
#
# Score = 35.4 bits (80), Expect = 0.023
# Identities = 20/85 (23%), Positives = 35/85 (40%), Gaps = 1/85 (1%)
#
# Query: 3 ESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQ 62
# ES +ET+ ++ + GM + T +D K AG+ + P + NP +
# Sbjct: 6 ESPVGYSETLSQLKNSIEKNGMKIVTEIDPQQNLKNAGISIEPQHIFEIFNPVYAKSVFD 65
#
# Query: 63 DKRTIGLDLPIRALAWEDGSGKVWL 87
# G+ P+R + GK W+
# Sbjct: 66 QNILAGIVPPLRIFVYVS-EGKTWM 89
#
#
# >BMEI0171
# Length = 218
#
# Score = 30.4 bits (67), Expect = 0.64
# Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
#
# Query: 62 QDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSD---VAIKAMVTGTGT 118
# ++ TIGL P A AW G G ++ P +A + L +S VAI AM G
# Sbjct: 45 EELATIGLPPPFWAFAWAGGQGVARYILDHPECVAGKRVLDFASGSGLVAIAAMKAGAKN 104
#
# Query: 119 V 119
# +
# Sbjct: 105 I 105
#
#
# >MJ1396
# Length = 2894
#
# Score = 30.4 bits (67), Expect = 0.67
# Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
#
# Query: 53 NPQNGTVLMQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAM 112
# NP G V M R P WEDG + + +N ++ + + G S DV
# Sbjct: 1685 NPTYGVVEMFGGRD-----PNEEDNWEDGKYEHYCLINLNSYSGKNITFGFSFDVITNTK 1739
#
# Query: 113 VTGTGTVTKY 122
# TG G+ +++
# Sbjct: 1740 STGQGSFSQF 1749
#
#
# >MA3947
# Length = 153
#
# Score = 29.6 bits (65), Expect = 1.1
# Identities = 23/78 (29%), Positives = 33/78 (41%), Gaps = 3/78 (3%)
#
# Query: 10 ETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFG--NPQNGTVLMQDKRTI 67
# E I +V + G V T +D K+ L T+ II G NP ++ + I
# Sbjct: 41 EAIAKVKKELAKEGFGVLTEIDVKETLKKK-LDYDFTDYIILGACNPPFAKNALEGEMNI 99
#
# Query: 68 GLDLPIRALAWEDGSGKV 85
# GL LP + + DG V
# Sbjct: 100 GLLLPCNVIVYADGDETV 117
#
#
# >BB0389
# Length = 1155
#
# Score = 29.6 bits (65), Expect = 1.2
# Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
#
# Query: 50 IFGNPQNGTVLMQDKRTIGLDLPIRALAWEDGSGKVWLT 88
# + G P++ VLMQ+ R +GLDL I ++D +V LT
# Sbjct: 1111 VSGIPESFNVLMQELRGLGLDLSI----YDDAGNQVPLT 1145
#
#
# >CC0789
# Length = 983
#
# Score = 28.5 bits (62), Expect = 2.4
# Identities = 14/31 (45%), Positives = 19/31 (61%)
#
# Query: 78 WEDGSGKVWLTVNDPAWLAQRHSLGLSSDVA 108
# WE G + L N+P A++ SL L+SDVA
# Sbjct: 376 WEPNDGYIALLHNNPIPAAEQKSLTLTSDVA 406
#
#
# >SMc00776_1
# Length = 875
#
# Score = 28.1 bits (61), Expect = 3.3
# Identities = 28/85 (32%), Positives = 37/85 (42%), Gaps = 11/85 (12%)
#
# Query: 27 FTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQDKRT----IGLDLPIRALAWEDGS 82
# F R+ A + +G P E I+F P NG L + R GLD P +A D
# Sbjct: 95 FRRLPLNAAVELIRIG-PGEEAILFTVPNNGKALSTEARAEAMIAGLDGPDTHMAVLDAD 153
#
# Query: 83 GKVWLTVNDPAWLAQRHSLGLSSDV 107
# G V P + SLGLS+D+
# Sbjct: 154 GTV--IAGSPGF----ESLGLSADI 172
#
#
# >BB0127
# Length = 553
#
# Score = 28.1 bits (61), Expect = 3.7
# Identities = 26/87 (29%), Positives = 35/87 (39%), Gaps = 7/87 (8%)
#
# Query: 43 LPPTELIIFGNPQNGTVLMQDKRTIGLDLPIRAL---AWEDGSGKVWLTVNDPAWLAQRH 99
# + P E G+ NG VL DKR + L I+ L WED S + ++
# Sbjct: 399 IDPEEYFKIGDLVNGKVLEVDKRKRNVRLGIKQLEESPWEDFSKSYKKGDTIEVEIVEKK 458
#
# Query: 100 SLGLSSDVAIKAMVTGTGTVTKYAAGD 126
# S G V K M G ++K GD
# Sbjct: 459 SKGFQVRVYNKIM----GFISKIQLGD 481
#
#
# >RSc0068
# Length = 401
#
# Score = 27.7 bits (60), Expect = 4.5
# Identities = 19/51 (37%), Positives = 24/51 (46%)
#
# Query: 3 ESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGN 53
# E ++A IER AA A G +FT D G + L PPT L G+
# Sbjct: 81 EPDEALAALIERTAAWAAEPGNAIFTLADRGYPPRLLELPDPPTLLYAKGD 131
#
#
# >PAE0710
# Length = 120
#
# Score = 27.7 bits (60), Expect = 4.8
# Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
#
# Query: 79 EDGSGKVWLTVNDPAWLAQRH----SLGLSSDVAIKAMVT 114
# E+G K+ LT +D A L Q H SLGL + V I A +T
# Sbjct: 50 EEGQKKIVLTADDAAHLYQLHERAKSLGLPTAVVIDAGLT 89
#
#
# >PH0147
# Length = 235
#
# Score = 27.3 bits (59), Expect = 4.9
# Identities = 13/35 (37%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
#
# Query: 55 QNGTVLMQDKRTIGLDLPIRALAWEDGSGKVWLTV 89
# + GTV++ DK+T+G R WE G +WL++
# Sbjct: 32 EEGTVIVADKQTMGHGRLNR--KWESPEGGLWLSI 64
#
#
# >MA0879
# Length = 313
#
# Score = 27.3 bits (59), Expect = 5.2
# Identities = 22/82 (26%), Positives = 40/82 (47%), Gaps = 2/82 (2%)
#
# Query: 42 GLPPTELIIFGNPQNGTVLMQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSL 101
# G+ +I G ++++ D+ T GLD+ I+A E K L + + L H+L
# Sbjct: 156 GMRQRAMIAMGLACTPSLIIADEPTTGLDVTIQAQIIE--LLKEVLEQSGASMLLITHNL 213
#
# Query: 102 GLSSDVAIKAMVTGTGTVTKYA 123
# G++S++ V G + +YA
# Sbjct: 214 GVASELCNSIAVMYAGEIIEYA 235
#
#
# >ECs3736
# Length = 352
#
# Score = 27.3 bits (59), Expect = 6.3
# Identities = 17/55 (30%), Positives = 26/55 (46%), Gaps = 7/55 (12%)
#
# Query: 72 PIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVTKYAAGD 126
# P+ A E+G ++W Q +LGL D+ I+A+ TGT + GD
# Sbjct: 10 PVMADVQEEGKPQLWNH-------KQNDALGLYLDLLIQAINTGTINAEDWQKGD 57
#
#
# >BS_trpA
# Length = 267
#
# Score = 27.3 bits (59), Expect = 6.4
# Identities = 10/33 (30%), Positives = 19/33 (57%)
#
# Query: 12 IERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLP 44
# I+R + +A GMN+ ++ G K+ G+ +P
# Sbjct: 58 IQRASKRALDQGMNIVKAIELGGEMKKNGVNIP 90
#
#
# >RSc1252
# Length = 330
#
# Score = 26.9 bits (58), Expect = 6.5
# Identities = 24/102 (23%), Positives = 41/102 (39%), Gaps = 11/102 (10%)
#
# Query: 36 AKEAGLGLPPTELIIFGNPQNGTVLMQD-KRTIGLDLPIRALAWEDGSGK----VWLTVN 90
# AK+ L P+ + + + V +QD + +DLP + + W SG VW+T +
# Sbjct: 140 AKQLPLAKTPSHIAFTADSKVAFVTLQDSNEVVAIDLPTQTVMWRMTSGAAPAGVWVTTD 199
#
# Query: 91 DPAWLAQR------HSLGLSSDVAIKAMVTGTGTVTKYAAGD 126
# L + + ++K + TG G A GD
# Sbjct: 200 QKYLLVGMTGADFVEVIDWRNRTSVKRIPTGKGAHNFRALGD 241
#
#
# >SP0267
# Length = 349
#
# Score = 26.9 bits (58), Expect = 6.8
# Identities = 23/60 (38%), Positives = 27/60 (44%), Gaps = 11/60 (18%)
#
# Query: 37 KEAGLGLPPTELIIFGNPQNGTVLMQDKRTIG-------LDLPIRALAW----EDGSGKV 85
# K A GLP II GNP+ L+Q R IG DL + A +W EDG V
# Sbjct: 189 KIAQAGLPIVYAIIGGNPRYFKKLIQAYREIGSEAGHADKDLKVGAHSWGWIAEDGEQAV 248
#
#
# >Cgl0188
# Length = 1146
#
# Score = 26.9 bits (58), Expect = 7.5
# Identities = 13/36 (36%), Positives = 22/36 (61%)
#
# Query: 89 VNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVTKYAA 124
# V+DP+ + S GL+ D+ I + T + ++ KYAA
# Sbjct: 202 VDDPSTASALASAGLNVDIEINSRFTSSPSLLKYAA 237
#
#
# >SMb21065
# Length = 325
#
# Score = 26.9 bits (58), Expect = 7.5
# Identities = 10/24 (41%), Positives = 14/24 (57%)
#
# Query: 71 LPIRALAWEDGSGKVWLTVNDPAW 94
# LP+ +L +E G VW +ND W
# Sbjct: 175 LPLFSLGYETGIDLVWTRLNDDPW 198
#
#
# >ygeQ
# Length = 278
#
# Score = 26.9 bits (58), Expect = 7.7
# Identities = 17/55 (30%), Positives = 26/55 (46%), Gaps = 7/55 (12%)
#
# Query: 72 PIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVTKYAAGD 126
# P+ A E+G ++W Q +LGL D+ I+A+ TGT + GD
# Sbjct: 208 PVMADVQEEGKPQLWNH-------KQNDALGLYLDLLIQAINTGTINAEDWQKGD 255
#
#
# >ECs3110
# Length = 264
#
# Score = 26.9 bits (58), Expect = 7.8
# Identities = 14/48 (29%), Positives = 22/48 (45%)
#
# Query: 72 PIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTV 119
# P R D G+ W PAWLA +L + V +K+++ T+
# Sbjct: 115 PQRLHIGADVWGQYWQQRQAPAWLASLSTLKPETSVTVKSLLDSLATL 162
#
#
# >Z3480
# Length = 264
#
# Score = 26.9 bits (58), Expect = 7.8
# Identities = 14/48 (29%), Positives = 22/48 (45%)
#
# Query: 72 PIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTV 119
# P R D G+ W PAWLA +L + V +K+++ T+
# Sbjct: 115 PQRLHIGADVWGQYWQQRQAPAWLASLSTLKPETSVTVKSLLDSLATL 162
#
#
# >NMB0180
# Length = 348
#
# Score = 26.9 bits (58), Expect = 7.9
# Identities = 22/93 (23%), Positives = 38/93 (40%)
#
# Query: 30 VDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQDKRTIGLDLPIRALAWEDGSGKVWLTV 89
# + GA G GL + F PQ G V + D IG + I A D + +
# Sbjct: 174 IHSGAVIGADGFGLAFADDSWFKIPQTGAVTLGDDVEIGSNTNIDRGAMSDTTVGNGTKI 233
#
# Query: 90 NDPAWLAQRHSLGLSSDVAIKAMVTGTGTVTKY 122
# ++ + +G + +A K ++G+ T+ Y
# Sbjct: 234 DNQVQIGHNCKIGSHTVIAAKTGISGSVTIGSY 266
#
#
# >yfaQ
# Length = 549
#
# Score = 26.9 bits (58), Expect = 8.0
# Identities = 14/48 (29%), Positives = 22/48 (45%)
#
# Query: 72 PIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTV 119
# P R D G+ W PAWLA +L + V +K+++ T+
# Sbjct: 115 PQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATL 162
#
#
# >VNG0498C
# Length = 168
#
# Score = 26.9 bits (58), Expect = 8.1
# Identities = 12/27 (44%), Positives = 15/27 (55%)
#
# Query: 78 WEDGSGKVWLTVNDPAWLAQRHSLGLS 104
# WE G+GKVW DP +LGL+
# Sbjct: 51 WEKGAGKVWALPFDPGAPVPVEALGLT 77
#
#
# >PM0616
# Length = 277
#
# Score = 26.6 bits (57), Expect = 9.3
# Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
#
# Query: 15 VAAKAKSMGMNVFTRVDHG--AGAKEAGLGLPPTELIIFGNPQNGTVLMQDKRTIGLDLP 72
# V A+A G+NV DH AG EA L T+L + + T + R I
# Sbjct: 23 VVARAVEKGVNVLALTDHDTTAGLAEARLAAQQTDLTLISGVEISTTW--ENRAIH---- 76
#
# Query: 73 IRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAI--------KAMVTGTGTVTK 121
# I L +++ S K+ + A L + +L +S +A +A + TG VT+
# Sbjct: 77 IVGLGFDETSAKMTALLRQQAALRYQRALEISDKLAKVGIVDAFEQAKMLATGEVTR 133
#
#
# >lin1197
# Length = 603
#
# Score = 26.6 bits (57), Expect = 9.5
# Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
#
# Query: 42 GLPPTELIIFGNPQNGTVLMQDKRT--IGLDLPIRALAWEDGSGKVWLTVNDP 92
# GLP +LI+ + +D T +GLD+P+ LA +D L DP
# Sbjct: 445 GLPMPDLILIDGGKGQIDSAKDVLTNELGLDIPVAGLAKDDKHRTSQLLFGDP 497
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.315 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,107,846
Number of Sequences: 192987
Number of extensions: 617124
Number of successful extensions: 1659
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1630
Number of HSP's gapped (non-prelim): 54
length of query: 126
length of database: 59,019,183
effective HSP length: 102
effective length of query: 24
effective length of database: 39,334,509
effective search space: 944028216
effective search space used: 944028216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
S2: 57 (26.6 bits)