proteins
| 14 proteins |
S | COG3439 | Uncharacterized conserved protein | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Brucella melitensis (Rhizobiales | Alphaproteobacteria) | ||||
| BMEI0634_2 | ||||
126 letters 0
0 646 = |||BMEI0634_2 (126) = 37
-3 162 = |NMB0783 (159) = 37
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BMEI0634_2
(126 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
BMEI0634_2 253 5e-68
NMB0783 67 6e-12
NMA0993 67 6e-12
SSO0995 65 2e-11
STM4505 62 2e-10
TP0895 41 5e-04
TVN0121 37 0.009
PM0616 31 0.39
BMEI0171 31 0.50
SMc00776_1 30 0.86
RSc1252 29 1.5
MA3947 29 1.5
MA0879 29 1.5
PAE0710 29 1.9
CC0789 28 2.5
BB0389 28 2.5
Cgl0188 28 4.3
AGc4799 28 4.3
BB0127 27 5.6
mll9511_1 27 5.6
# >BMEI0634_2
# Length = 126
#
# Score = 253 bits (646), Expect = 5e-68
# Identities = 126/126 (100%), Positives = 126/126 (100%)
#
# Query: 1 TVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVL 60
# TVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVL
# Sbjct: 1 TVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVL 60
#
# Query: 61 MQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVT 120
# MQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVT
# Sbjct: 61 MQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVT 120
#
# Query: 121 KYAAGD 126
# KYAAGD
# Sbjct: 121 KYAAGD 126
#
#
# >NMB0783
# Length = 159
#
# Score = 67.0 bits (162), Expect = 6e-12
# Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
#
# Query: 1 TVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVL 60
# T+ S++S ET+ R+ KS GM++F +DH A+ GL + P ++I+FG P+ GT L
# Sbjct: 38 TLTSKYSFDETVSRLETAIKSKGMDIFAVIDHQEAARRNGLTMQPAKVIVFGTPKAGTPL 97
#
# Query: 61 MQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLG 102
# M L LP+R L E GKV D L +G
# Sbjct: 98 MVKDPAFALQLPLRVLVTET-DGKVRAAYTDTRALIAGSRIG 138
#
#
# >NMA0993
# Length = 159
#
# Score = 67.0 bits (162), Expect = 6e-12
# Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
#
# Query: 1 TVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVL 60
# T+ S++S ET+ R+ KS GM++F +DH A+ GL + P ++I+FG P+ GT L
# Sbjct: 38 TLTSKYSFDETVSRLETAIKSKGMDIFAVIDHQEAARRNGLTMQPAKVIVFGTPKAGTPL 97
#
# Query: 61 MQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLG 102
# M L LP+R L E GKV D L +G
# Sbjct: 98 MVKDPAFALQLPLRVLVTET-DGKVRAAYTDTRALIAGSRIG 138
#
#
# >SSO0995
# Length = 123
#
# Score = 65.1 bits (157), Expect = 2e-11
# Identities = 29/73 (39%), Positives = 43/73 (58%)
#
# Query: 10 ETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQDKRTIGL 69
# E ++ + + KS G VF +DH A++ GL L PT +I FGNP GT+LM R +
# Sbjct: 13 ECVKTLIERIKSSGAEVFAIIDHSENARKVGLSLEPTIVIYFGNPSVGTLLMLHNRHVAY 72
#
# Query: 70 DLPIRALAWEDGS 82
# +LP+R L W + +
# Sbjct: 73 ELPLRFLVWSENN 85
#
#
# >STM4505
# Length = 153
#
# Score = 62.4 bits (150), Expect = 2e-10
# Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
#
# Query: 4 SRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQD 63
# S + +T R+ G+ +F DH A+ L +PPT +++FGNP+ GT LM
# Sbjct: 37 SAYDYLQTRARLMHAVADHGLVLFGEFDHARAAQNVNLKMPPTTVLVFGNPKGGTPLMLA 96
#
# Query: 64 KRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAM 112
# + LDLP R L + G+ ++ + PA QR+ L + A+K +
# Sbjct: 97 HPELALDLPFRVLISQQADGRTLVSYH-PAETLQRYGLDAADIQALKKL 144
#
#
# >TP0895
# Length = 168
#
# Score = 40.8 bits (94), Expect = 5e-04
# Identities = 21/73 (28%), Positives = 40/73 (54%)
#
# Query: 1 TVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVL 60
# T+ SR+ T++ + + ++ G +VF VD+ A + L + P +L++ G P+ GT L
# Sbjct: 48 TITSRYPFDRTMQLLESALRTQGFSVFGIVDYREAAHKQNLDIQPAKLMVVGFPKIGTPL 107
#
# Query: 61 MQDKRTIGLDLPI 73
# M + L +P+
# Sbjct: 108 MLEDPYFLLRVPL 120
#
#
# >TVN0121
# Length = 129
#
# Score = 36.6 bits (83), Expect = 0.009
# Identities = 20/85 (23%), Positives = 35/85 (40%), Gaps = 1/85 (1%)
#
# Query: 3 ESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQ 62
# ES +ET+ ++ + GM + T +D K AG+ + P + NP +
# Sbjct: 6 ESPVGYSETLSQLKNSIEKNGMKIVTEIDPQQNLKNAGISIEPQHIFEIFNPVYAKSVFD 65
#
# Query: 63 DKRTIGLDLPIRALAWEDGSGKVWL 87
# G+ P+R + GK W+
# Sbjct: 66 QNILAGIVPPLRIFVYV-SEGKTWM 89
#
#
# >PM0616
# Length = 277
#
# Score = 31.2 bits (69), Expect = 0.39
# Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
#
# Query: 15 VAAKAKSMGMNVFTRVDHG--AGAKEAGLGLPPTELIIFGNPQNGTVLMQDKRTIGLDLP 72
# V A+A G+NV DH AG EA L T+L + + T + R I
# Sbjct: 23 VVARAVEKGVNVLALTDHDTTAGLAEARLAAQQTDLTLISGVEISTT--WENRAI----H 76
#
# Query: 73 IRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSS--------DVAIKAMVTGTGTVTK 121
# I L +++ S K+ + A L + +L +S D +A + TG VT+
# Sbjct: 77 IVGLGFDETSAKMTALLRQQAALRYQRALEISDKLAKVGIVDAFEQAKMLATGEVTR 133
#
#
# >BMEI0171
# Length = 218
#
# Score = 30.8 bits (68), Expect = 0.50
# Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
#
# Query: 62 QDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSD---VAIKAMVTGTGT 118
# ++ TIGL P A AW G G ++ P +A + L +S VAI AM G
# Sbjct: 45 EELATIGLPPPFWAFAWAGGQGVARYILDHPECVAGKRVLDFASGSGLVAIAAMKAGAKN 104
#
# Query: 119 V 119
# +
# Sbjct: 105 I 105
#
#
# >SMc00776_1
# Length = 875
#
# Score = 30.0 bits (66), Expect = 0.86
# Identities = 28/85 (32%), Positives = 37/85 (42%), Gaps = 11/85 (12%)
#
# Query: 27 FTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQDKRT----IGLDLPIRALAWEDGS 82
# F R+ A + +G P E I+F P NG L + R GLD P +A D
# Sbjct: 95 FRRLPLNAAVELIRIG-PGEEAILFTVPNNGKALSTEARAEAMIAGLDGPDTHMAVLDAD 153
#
# Query: 83 GKVWLTVNDPAWLAQRHSLGLSSDV 107
# G V P + SLGLS+D+
# Sbjct: 154 GTV--IAGSPGF----ESLGLSADI 172
#
#
# >RSc1252
# Length = 330
#
# Score = 29.3 bits (64), Expect = 1.5
# Identities = 24/102 (23%), Positives = 41/102 (39%), Gaps = 11/102 (10%)
#
# Query: 36 AKEAGLGLPPTELIIFGNPQNGTVLMQDKR-TIGLDLPIRALAWEDGSGK----VWLTVN 90
# AK+ L P+ + + + V +QD + +DLP + + W SG VW+T +
# Sbjct: 140 AKQLPLAKTPSHIAFTADSKVAFVTLQDSNEVVAIDLPTQTVMWRMTSGAAPAGVWVTTD 199
#
# Query: 91 DPAWLAQR------HSLGLSSDVAIKAMVTGTGTVTKYAAGD 126
# L + + ++K + TG G A GD
# Sbjct: 200 QKYLLVGMTGADFVEVIDWRNRTSVKRIPTGKGAHNFRALGD 241
#
#
# >MA3947
# Length = 153
#
# Score = 29.3 bits (64), Expect = 1.5
# Identities = 23/78 (29%), Positives = 33/78 (41%), Gaps = 3/78 (3%)
#
# Query: 10 ETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFG--NPQNGTVLMQDKRTI 67
# E I +V + G V T +D K+ L T+ II G NP ++ + I
# Sbjct: 41 EAIAKVKKELAKEGFGVLTEIDVKETLKKK-LDYDFTDYIILGACNPPFAKNALEGEMNI 99
#
# Query: 68 GLDLPIRALAWEDGSGKV 85
# GL LP + + DG V
# Sbjct: 100 GLLLPCNVIVYADGDETV 117
#
#
# >MA0879
# Length = 313
#
# Score = 29.3 bits (64), Expect = 1.5
# Identities = 22/82 (26%), Positives = 40/82 (47%), Gaps = 2/82 (2%)
#
# Query: 42 GLPPTELIIFGNPQNGTVLMQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSL 101
# G+ +I G ++++ D+ T GLD+ I+A E K L + + L H+L
# Sbjct: 156 GMRQRAMIAMGLACTPSLIIADEPTTGLDVTIQAQIIE--LLKEVLEQSGASMLLITHNL 213
#
# Query: 102 GLSSDVAIKAMVTGTGTVTKYA 123
# G++S++ V G + +YA
# Sbjct: 214 GVASELCNSIAVMYAGEIIEYA 235
#
#
# >PAE0710
# Length = 120
#
# Score = 28.9 bits (63), Expect = 1.9
# Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
#
# Query: 79 EDGSGKVWLTVNDPAWLAQRH----SLGLSSDVAIKAMVT--GTGTVTKYAAG 125
# E+G K+ LT +D A L Q H SLGL + V I A +T GT T G
# Sbjct: 50 EEGQKKIVLTADDAAHLYQLHERAKSLGLPTAVVIDAGLTELPPGTPTAICVG 102
#
#
# >CC0789
# Length = 983
#
# Score = 28.5 bits (62), Expect = 2.5
# Identities = 14/31 (45%), Positives = 19/31 (61%)
#
# Query: 78 WEDGSGKVWLTVNDPAWLAQRHSLGLSSDVA 108
# WE G + L N+P A++ SL L+SDVA
# Sbjct: 376 WEPNDGYIALLHNNPIPAAEQKSLTLTSDVA 406
#
#
# >BB0389
# Length = 1155
#
# Score = 28.5 bits (62), Expect = 2.5
# Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
#
# Query: 50 IFGNPQNGTVLMQDKRTIGLDLPIRALAWEDGSGKVWLT 88
# + G P++ VLMQ+ R +GLDL I ++D +V LT
# Sbjct: 1111 VSGIPESFNVLMQELRGLGLDLSI----YDDAGNQVPLT 1145
#
#
# >Cgl0188
# Length = 1146
#
# Score = 27.7 bits (60), Expect = 4.3
# Identities = 13/36 (36%), Positives = 22/36 (61%)
#
# Query: 89 VNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVTKYAA 124
# V+DP+ + S GL+ D+ I + T + ++ KYAA
# Sbjct: 202 VDDPSTASALASAGLNVDIEINSRFTSSPSLLKYAA 237
#
#
# >AGc4799
# Length = 214
#
# Score = 27.7 bits (60), Expect = 4.3
# Identities = 16/65 (24%), Positives = 25/65 (37%)
#
# Query: 62 QDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVTK 121
# ++ IGL P A AW G G ++ P + + L +S + A+ K
# Sbjct: 41 EELEEIGLPPPFWAFAWAGGQGLARYILDHPESVCGKRVLDFASGSGLVAIAAAKAGAAK 100
#
# Query: 122 YAAGD 126
# A D
# Sbjct: 101 VLAAD 105
#
#
# >BB0127
# Length = 553
#
# Score = 27.3 bits (59), Expect = 5.6
# Identities = 26/87 (29%), Positives = 35/87 (39%), Gaps = 7/87 (8%)
#
# Query: 43 LPPTELIIFGNPQNGTVLMQDKRTIGLDLPIRAL---AWEDGSGKVWLTVNDPAWLAQRH 99
# + P E G+ NG VL DKR + L I+ L WED S + ++
# Sbjct: 399 IDPEEYFKIGDLVNGKVLEVDKRKRNVRLGIKQLEESPWEDFSKSYKKGDTIEVEIVEKK 458
#
# Query: 100 SLGLSSDVAIKAMVTGTGTVTKYAAGD 126
# S G V K M G ++K GD
# Sbjct: 459 SKGFQVRVYNKIM----GFISKIQLGD 481
#
#
# >mll9511_1
# Length = 630
#
# Score = 27.3 bits (59), Expect = 5.6
# Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
#
# Query: 30 VDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQDKRTIGLDLPIRALAWEDGSGKVWLTV 89
# VDHG PP E + G P+ G + ++ + GL ++ +DG G T+
# Sbjct: 344 VDHGLE--------PPEERLAMGKPEEGLIRLEARHNAGL---LQIAVVDDGRGIELSTL 392
#
# Query: 90 NDPA---WLAQRHSLGLSSDVAIKAMV 113
# + LA R S S+ + A +
# Sbjct: 393 RETVVARQLATRESADTLSETELLAFL 419
#
#
Database: myva
Posted date: Sep 17, 2002 10:27 AM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.315 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,107,846
Number of Sequences: 192987
Number of extensions: 617124
Number of successful extensions: 1659
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1630
Number of HSP's gapped (non-prelim): 54
length of query: 126
length of database: 59,019,183
effective HSP length: 102
effective length of query: 24
effective length of database: 39,334,509
effective search space: 944028216
effective search space used: 944028216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
S2: 57 (26.6 bits)