R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 35 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|2059326|dbj|BAA19836.1| (D67067) thymic epithelial cell surface antigen
[Mus musculus]
Length = 515
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 515
0 150 300 450
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.055, P = 0.053
Identities = 23/55 (41%), Positives = 31/55 (56%), Frame = +2
Query: 26 KKKSLLGGSPDSSEAQVTSKVVDESEDDDSNDDGPVEWASYWKPNITINLVADFT 190
K K+LL G E + +++ +ED GPVE S+W PNITIN+V D T
Sbjct: 207 KTKNLLTG-----ETEADPEMIKRAEDY-----GPVEVISHWHPNITINIVDDHT 251
>gi|4502897 ref|NP_001285.1| cleft lip and palate associated transmembrane
protein 1 >gi|4039014|gb|AAC97420.1| (AF037338) cleft lip and
palate transmembrane protein 1 [Homo sapiens]
>gi|4063033|gb|AAC98151.1| (AF037339) cleft lip and palate
transmembrane protein 1 [Homo sapiens]
Length = 669
Frame 2 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 669
0 150 300 450 600
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.076, P = 0.073
Identities = 23/55 (41%), Positives = 31/55 (56%), Frame = +2
Query: 26 KKKSLLGGSPDSSEAQVTSKVVDESEDDDSNDDGPVEWASYWKPNITINLVADFT 190
K K+LL G E + +++ +ED GPVE S+W PNITIN+V D T
Sbjct: 207 KTKNLLTG-----ETEADPEMIKRAEDY-----GPVEVISHWHPNITINIVDDHT 251
>gi|7298539|gb|AAF53758.1| (AE003661) CG15174 gene product [Drosophila
melanogaster]
Length = 131
Frame -1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 131
0 50 100
Minus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.085, P = 0.082
Identities = 12/32 (37%), Positives = 16/32 (50%), Frame = -1
Query: 158 LVSNMKPTPQDHHH*NHHLQIHQPPWMSLEPH 63
++ +KP P HHH H Q+ PP PH
Sbjct: 1 MMQTLKPPPPLHHHHQHQHQLQHPPQQQPHPH 32
>gi|4512707|gb|AAD21760.1| (AC006569) hypothetical protein [Arabidopsis
thaliana]
Length = 371
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 371
0 150 300
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.42, P = 0.34
Identities = 15/42 (35%), Positives = 27/42 (64%), Frame = +2
Query: 11 KSQADKKKSLLGGSPDSSEAQVTSKVVDESEDDDSNDDGPVE 136
+ +A K++ G S S +A+ +SK V+E E+DD +DD ++
Sbjct: 303 EQKAKNKEAEAGTSKSSGDAEQSSKEVNEEEEDDDDDDDDLD 344
>gi|6599157|emb|CAB63723.1| (AL133576) hypothetical protein [Homo sapiens]
Length = 115
Frame 2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | 115
0 50 100
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 0.47, P = 0.38
Identities = 14/34 (41%), Positives = 20/34 (58%), Frame = +2
Query: 26 KKKSLLGGSPDSSEAQVTSKVVDESEDDDSNDDG 127
KKK GGSPD +++ T ++ D D ND+G
Sbjct: 45 KKKRKQGGSPDEPDSKATRTDCSDNSDSD-NDEG 77
>gi|6705952|dbj|BAA89442.1| (AB003159) ORF [Corynebacterium ammoniagenes]
Length = 193
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.51, P = 0.40
Identities = 12/30 (40%), Positives = 23/30 (76%), Frame = +2
Query: 50 SPDSSEAQVTSKVVDESEDDDSNDDGPVEW 139
S +S+EA +S+++D E D+++DDG V++
Sbjct: 29 SSESTEAAESSEIIDAGEADEASDDGAVDY 58
>gi|6682619|gb|AAF23340.1|AC016163_14 (AC016163) hypothetical protein
[Arabidopsis thaliana]
Length = 131
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 131
0 50 100
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 0.74, P = 0.52
Identities = 14/27 (51%), Positives = 21/27 (77%), Frame = +2
Query: 53 PDSSEAQVT-SKVVDESEDDDSNDDGP 130
P+SSE +++ S+V + SEDDDS +D P
Sbjct: 12 PESSEEELSDSQVSNSSEDDDSMEDEP 38
>gi|433395|gb|AAA03606.1| (U04197) HNF3 beta transcription factor [Mus
musculus]
Length = 259
Frame -1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | 259
0 50 100 150 200 250
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.86, P = 0.58
Identities = 13/40 (32%), Positives = 24/40 (60%), Frame = -1
Query: 161 YLVSNMKPTPQDHHH*NHHLQIHQPPWMSLEPH*NLVNLP 42
+ ++N+ + Q HHH +HH HQP M L+ + +++ P
Sbjct: 177 FSINNLMSSEQQHHHSHHH---HQPHKMDLKAYEQVMHYP 213
>gi|3719323|gb|AAC63308.1| (AF085252) D7-like protein [Perca flavescens]
Length = 152
Frame 3 hits (HSPs): ____________
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
Plus Strand HSPs:
Score = 46 (16.2 bits), Expect = 1.3, Sum P(2) = 0.72
Identities = 13/33 (39%), Positives = 17/33 (51%), Frame = +3
Query: 6 CPSHKQIKRKVC-WEVHQILVRLK*HPRWLMNLK 104
CP K + + C + H I R K HP+ M LK
Sbjct: 42 CPFDKNHQIRACRFPYHLIKCR-KNHPKLAMELK 74
Score = 34 (12.0 bits), Expect = 1.3, Sum P(2) = 0.72
Identities = 5/15 (33%), Positives = 9/15 (60%), Frame = +2
Query: 95 ESEDDDSNDDGPVEW 139
++ED+ +D P W
Sbjct: 103 DTEDEADDDAAPFVW 117
>gi|913042|gb|AAB33816.1| hepatocyte nuclear factor 3 beta, HNF3 beta [rats,
AR42J exocrine pancreatic cells, Peptide, 450 aa]
Length = 450
Frame -1 hits (HSPs): _____
Annotated Domains: ___ __
__________________________________________________
Database sequence: | | | | 450
0 150 300
__________________
Annotated Domains:
PROSITE FORK_HEAD_1: Fork head domain signature 150..163
PROSITE FORK_HEAD_2: Fork head domain signature 194..200
__________________
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.9, P = 0.85
Identities = 13/40 (32%), Positives = 24/40 (60%), Frame = -1
Query: 161 YLVSNMKPTPQDHHH*NHHLQIHQPPWMSLEPH*NLVNLP 42
+ ++N+ + Q HHH +HH HQP M L+ + +++ P
Sbjct: 368 FSINNLMSSEQQHHHSHHH---HQPHKMDLKTYEQVMHYP 404
>gi|4958950|dbj|BAA78106.1| (AB028021) hepatocyte nuclear factor-3 beta [Homo
sapiens] >gi|5231123|gb|AAD41081.1| (AF147787) hepatocyte nuclear
factor-3 beta [Homo sapiens] >gi|5805394|gb|AAD51978.1|AF176110_1
(AF176110) hepatocyte nuclear factor-3 beta [Homo sapiens]
>gi|7688215|emb|CAB89773.1| (AL121722) dJ788L20.1 (hepatocyte
nuclear factor 3, beta) [Homo sapiens]
Length = 457
Frame -1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | || 457
0 150 300 450
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.9, P = 0.85
Identities = 13/40 (32%), Positives = 24/40 (60%), Frame = -1
Query: 161 YLVSNMKPTPQDHHH*NHHLQIHQPPWMSLEPH*NLVNLP 42
+ ++N+ + Q HHH +HH HQP M L+ + +++ P
Sbjct: 376 FSINNLMSSEQQHHHSHHH---HQPHKMDLKAYEQVMHYP 412
>gi|112412|pir||B39533 transcription factor HNF-3 beta - rat
Length = 458
Frame -1 hits (HSPs): _____
Annotated Domains: ___________
__________________________________________________
Database sequence: | | | || 458
0 150 300 450
__________________
Annotated Domains:
Entrez domain: fork head DNA-binding domain hom 159..249
PROSITE FORK_HEAD_1: Fork head domain signature 159..172
PROSITE FORK_HEAD_2: Fork head domain signature 203..209
__________________
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.9, P = 0.85
Identities = 13/40 (32%), Positives = 24/40 (60%), Frame = -1
Query: 161 YLVSNMKPTPQDHHH*NHHLQIHQPPWMSLEPH*NLVNLP 42
+ ++N+ + Q HHH +HH HQP M L+ + +++ P
Sbjct: 376 FSINNLMSSEQQHHHSHHH---HQPHKMDLKTYEQVMHYP 412
>gi|6981036 ref|NP_036875.1| hepatocyte nuclear factor 3 beta
>gi|417134|sp|P32182|HN3B_RAT HEPATOCYTE NUCLEAR FACTOR 3-BETA
(HNF-3B) >gi|204623|gb|AAA41338.1| (L09647) HNF-3 beta [Rattus
norvegicus]
Length = 458
Frame -1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | || 458
0 150 300 450
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.9, P = 0.85
Identities = 13/40 (32%), Positives = 24/40 (60%), Frame = -1
Query: 161 YLVSNMKPTPQDHHH*NHHLQIHQPPWMSLEPH*NLVNLP 42
+ ++N+ + Q HHH +HH HQP M L+ + +++ P
Sbjct: 376 FSINNLMSSEQQHHHSHHH---HQPHKMDLKTYEQVMHYP 412
>gi|6753898 ref|NP_034576.1| forkhead box A2 >gi|547662|sp|P35583|HN3B_MOUSE
HEPATOCYTE NUCLEAR FACTOR 3-BETA (HNF-3B) >gi|1083354|pir||B54258
transcription factor HNF-3 beta - mouse >gi|402191|emb|CAA52891.1|
(X74937) HNF-3beta [Mus musculus]
Length = 459
Frame -1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 459
0 150 300 450
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.9, P = 0.85
Identities = 13/40 (32%), Positives = 24/40 (60%), Frame = -1
Query: 161 YLVSNMKPTPQDHHH*NHHLQIHQPPWMSLEPH*NLVNLP 42
+ ++N+ + Q HHH +HH HQP M L+ + +++ P
Sbjct: 377 FSINNLMSSEQQHHHSHHH---HQPHKMDLKAYEQVMHYP 413
>gi|404764|gb|AAA03161.1| (L10409) fork head related protein [Mus musculus]
Length = 459
Frame -1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 459
0 150 300 450
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.9, P = 0.85
Identities = 13/40 (32%), Positives = 24/40 (60%), Frame = -1
Query: 161 YLVSNMKPTPQDHHH*NHHLQIHQPPWMSLEPH*NLVNLP 42
+ ++N+ + Q HHH +HH HQP M L+ + +++ P
Sbjct: 377 FSINNLMSSEQQHHHSHHH---HQPHKMDLKAYEQVMHYP 413
>gi|913041|gb|AAB33815.1| hepatocyte nuclear factor 3 beta, HNF3 beta [rats,
AR42J exocrine pancreatic cells, Peptide, 459 aa]
Length = 459
Frame -1 hits (HSPs): _____
Annotated Domains: __ _
__________________________________________________
Database sequence: | | | | | 459
0 150 300 450
__________________
Annotated Domains:
PROSITE FORK_HEAD_1: Fork head domain signature 159..172
PROSITE FORK_HEAD_2: Fork head domain signature 203..209
__________________
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.9, P = 0.85
Identities = 13/40 (32%), Positives = 24/40 (60%), Frame = -1
Query: 161 YLVSNMKPTPQDHHH*NHHLQIHQPPWMSLEPH*NLVNLP 42
+ ++N+ + Q HHH +HH HQP M L+ + +++ P
Sbjct: 377 FSINNLMSSEQQHHHSHHH---HQPHKMDLKTYEQVMHYP 413
>gi|6633811|gb|AAF19670.1|AC009519_4 (AC009519) F1N19.7 [Arabidopsis thaliana]
Length = 368
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 368
0 150 300
Plus Strand HSPs:
Score = 55 (19.4 bits), Expect = 1.9, Sum P(2) = 0.86
Identities = 8/16 (50%), Positives = 10/16 (62%), Frame = +2
Query: 92 DESEDDDSNDDGPVEW 139
D+ +DDD DD P W
Sbjct: 60 DDDDDDDDGDDAPKTW 75
Score = 33 (11.6 bits), Expect = 1.9, Sum P(2) = 0.86
Identities = 7/17 (41%), Positives = 10/17 (58%), Frame = +3
Query: 6 CPSHKQIKRKVCWEVHQ 56
C S KQ K V +V++
Sbjct: 3 CTSSKQAKANVVADVYK 19
>gi|348522|pir||H45557 orf B downstream of env - feline immunodeficiency virus
Length = 85
Frame 2 hits (HSPs): ______________________
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
__________________
Annotated Domains:
DOMO DM02889: FIVNEFPROTEIN 11..84
__________________
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 2.0, P = 0.87
Identities = 11/36 (30%), Positives = 17/36 (47%), Frame = +2
Query: 77 TSKVVDESEDDDSNDDGPVEWASYWKPNITINLVAD 184
T DE+E+ S + V+W YW P ++ D
Sbjct: 50 TPSTTDETEEKTSAKEKRVDWEDYWDPEEIEKMLMD 85
>gi|7430738|pir||S69935 ferredoxin [2Fe-2S] II - tomato
>gi|1589259|prf||2210387B ferredoxin:ISOTYPE=II [Lycopersicon
esculentum]
Length = 97
Frame 2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | 97
0 20 40 60 80
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 2.0, P = 0.87
Identities = 20/54 (37%), Positives = 28/54 (51%), Frame = +2
Query: 23 DKKKSLLGGSPDSSEAQVTSKVVDESE----DDDSNDDGPV-EWASYWKPNITI 169
D S G+ S +VT+ VD+S+ DDD D+G V +Y K N+TI
Sbjct: 34 DLPYSCRAGACSSCAGKVTAGSVDQSDNSFLDDDQIDEGFVLTCVAYPKSNVTI 87
>gi|4733979|gb|AAD28661.1|AC007264_11 (AC007264) hypothetical protein
[Arabidopsis thaliana]
Length = 85
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 2.0, P = 0.87
Identities = 16/42 (38%), Positives = 25/42 (59%), Frame = +2
Query: 5 LPKSQADKKKSLL-GGSPDSSEAQVTSKVVDESEDDDSNDDGP 130
LP + D K SLL GG P S+ A++ +K V++ ++N P
Sbjct: 11 LPFNGDDTKSSLLTGGDPPSA-AELAAKTVEDQLPREANPTAP 52
>gi|1572667|gb|AAB09083.1| (U69985) kinesin-like protein K8 [Dictyostelium
discoideum]
Length = 338
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 338
0 150 300
Plus Strand HSPs:
Score = 69 (24.3 bits), Expect = 2.1, P = 0.88
Identities = 15/41 (36%), Positives = 24/41 (58%), Frame = +2
Query: 11 KSQADKKKSLLGGSPDS---SEAQVTSKVVDESEDDDSNDD 124
K Q+ KK + SPDS ++ +S ++DE E+DD D+
Sbjct: 239 KKQSKGKKKMFSSSPDSLSPNKDDDSSIMIDEDEEDDEEDE 279
>gi|4506307 ref|NP_002829.1| protein tyrosine phosphatase, receptor type, c
polypeptide >gi|116006|sp|P08575|CD45_HUMAN LEUKOCYTE COMMON
ANTIGEN PRECURSOR (L-CA) (CD45 ANTIGEN) (T200)
>gi|34281|emb|CAA68669.1| (Y00638) LCA (AA -23 to 1281) [Homo
sapiens]
Length = 1304
Frame 2 hits (HSPs): __ __
__________________________________________________
Database sequence: | | | | 1304
0 500 1000
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 2.2, Sum P(2) = 0.89
Identities = 14/32 (43%), Positives = 19/32 (59%), Frame = +2
Query: 92 DESEDDDSNDDGPVEWA------SYWKPNITI 169
DES DDDS+ + P ++ SYWKP + I
Sbjct: 1000 DESSDDDSDSEEPSKYINASFIMSYWKPEVMI 1031
Score = 33 (11.6 bits), Expect = 2.2, Sum P(2) = 0.89
Identities = 6/17 (35%), Positives = 11/17 (64%), Frame = +2
Query: 50 SPDSSEAQVTSKVVDES 100
SPD++ QV+ +D +
Sbjct: 75 SPDNTSTQVSPDSLDNA 91
>gi|539627|pir||A46546 leukocyte common antigen long splice form precursor -
human
Length = 1304
Frame 2 hits (HSPs): __ __
Annotated Domains: __________________________
__________________________________________________
Database sequence: | | | | 1304
0 500 1000
__________________
Annotated Domains:
Entrez domain: leukocyte common antigen cytosol 594..1235
Entrez active site: Cys (phosphocysteine interm 851
Entrez binding site: substrate phosphate (Arg) 857
PROSITE TYR_PHOSPHATASE_1: Tyrosine specific pro 1165..1177
PROSITE TYR_PHOSPHATASE_1: Tyrosine specific pro 849..861
__________________
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 2.2, Sum P(2) = 0.89
Identities = 14/32 (43%), Positives = 19/32 (59%), Frame = +2
Query: 92 DESEDDDSNDDGPVEWA------SYWKPNITI 169
DES DDDS+ + P ++ SYWKP + I
Sbjct: 1000 DESSDDDSDSEEPSKYINASFIMSYWKPEVMI 1031
Score = 33 (11.6 bits), Expect = 2.2, Sum P(2) = 0.89
Identities = 6/17 (35%), Positives = 11/17 (64%), Frame = +2
Query: 50 SPDSSEAQVTSKVVDES 100
SPD++ QV+ +D +
Sbjct: 75 SPDNTSTQVSPDSLDNA 91
>gi|3970862|dbj|BAA34795.1| (AB015337) HRIHFB2115 [Homo sapiens]
Length = 105
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | | 105
0 20 40 60 80 100
Plus Strand HSPs:
Score = 60 (21.1 bits), Expect = 2.6, P = 0.93
Identities = 18/45 (40%), Positives = 22/45 (48%), Frame = +2
Query: 8 PKSQADKKKSLLGGS-----PDSSEAQVTSKV--VDESEDDDSND 121
PK D KS+ GS P +S AQ V VD E+D SN+
Sbjct: 21 PKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNN 65
>gi|7621167|gb|AAF64934.1|AF232470_1 (AF232470) Sic1.165 [Streptococcus
pyogenes]
Length = 276
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 276
0 50 100 150 200 250
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 2.6, P = 0.93
Identities = 16/35 (45%), Positives = 19/35 (54%), Frame = +2
Query: 35 SLLGGSPDSSEAQVTSKVVDESEDDDSNDDGPVEW 139
+LLG + S TS+ D S DD S DD P EW
Sbjct: 22 ALLGATQPVSAETYTSRNFDWSGDDWSGDDWPEEW 56
>gi|7294803|gb|AAF50137.1| (AE003547) CG6449 gene product [Drosophila
melanogaster]
Length = 196
Frame 2 hits (HSPs): ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 196
0 50 100 150
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 2.6, Sum P(2) = 0.93
Identities = 9/16 (56%), Positives = 13/16 (81%), Frame = +2
Query: 83 KVVDESEDDDSNDDGP 130
+V+ E++DDD NDD P
Sbjct: 18 QVLPETDDDD-NDDRP 32
Score = 41 (14.4 bits), Expect = 2.6, Sum P(2) = 0.93
Identities = 9/15 (60%), Positives = 10/15 (66%), Frame = +1
Query: 133 GVGFILETKYNNKLG 177
GVG IL +YN K G
Sbjct: 137 GVGLILNGQYNIKNG 151
>gi|7506307|pir||T16692 hypothetical protein R05F9.11 - Caenorhabditis elegans
>gi|1109819|gb|AAA83173.1| (U41533) weak similarity to A. thaliana
ELI3-2 protein (PIR:S28044) [Caenorhabditis elegans]
Length = 521
Frame 2 hits (HSPs): ___ ____
__________________________________________________
Database sequence: | | | | | 521
0 150 300 450
Plus Strand HSPs:
Score = 56 (19.7 bits), Expect = 2.7, Sum P(2) = 0.93
Identities = 12/28 (42%), Positives = 23/28 (82%), Frame = +2
Query: 92 DESEDDDSNDDGPVEWASYWKPNITINL 175
DES++++S++D PV +S+ +P++TI L
Sbjct: 435 DESDEENSDED-PVAESSH-RPHLTIQL 460
Score = 34 (12.0 bits), Expect = 2.7, Sum P(2) = 0.93
Identities = 6/25 (24%), Positives = 16/25 (64%), Frame = +2
Query: 26 KKKSLLGGSPDSSEAQVTSKVVDES 100
K K + G+P + ++ S+V++++
Sbjct: 191 KDKFGITGNPLNDPTEILSRVIEKN 215
>gi|433501|emb|CAA53152.1| (X75383) TFIIA [Homo sapiens]
>gi|727195|dbj|BAA03603.1| (D14886) TFIIA-37 [Homo sapiens]
Length = 337
Frame -1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 337
0 150 300
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 2.7, P = 0.93
Identities = 14/33 (42%), Positives = 19/33 (57%), Frame = -1
Query: 185 SQQPSLLLYLVSNMKPTPQDHHH*NHHLQIHQP 87
S++ LLL + +P Q HHH +HH Q QP
Sbjct: 22 SEEQQLLLQVQQQHQPQQQQHHHHHHHQQA-QP 53
>gi|6319605 ref|NP_009687.1| involved in mating pathway; Opy1p
>gi|586539|sp|P38271|OPY1_YEAST OPY1 PROTEIN (OVERPRODUCTION
INDUCED PHEROMONE RESISTANT YEAST 1) >gi|626518|pir||S45998
hypothetical protein YBR129c - yeast (Saccharomyces cerevisiae)
>gi|496860|emb|CAA53488.1| (X75891) YBR1004 [Saccharomyces
cerevisiae] >gi|536417|emb|CAA85086.1| (Z35998) ORF YBR129c
[Saccharomyces cerevisiae] >gi|2440017|gb|AAB81505.1| (AF016262)
overproduction induced pheromone resistant yeast 1 [Saccharomyces
cerevisiae] >gi|1582516|prf||2118402D YBR1004 gene [Saccharomyces
cerevisiae]
Length = 328
Frame 2 hits (HSPs): ____ ____
__________________________________________________
Database sequence: | | | | 328
0 150 300
Plus Strand HSPs:
Score = 51 (18.0 bits), Expect = 3.0, Sum P(2) = 0.95
Identities = 10/21 (47%), Positives = 12/21 (57%), Frame = +2
Query: 50 SPDSSEAQVTSKVVDESEDDD 112
SP +E+ T DE EDDD
Sbjct: 151 SPSGNESVTTGSDYDEEEDDD 171
Score = 34 (12.0 bits), Expect = 3.0, Sum P(2) = 0.95
Identities = 7/19 (36%), Positives = 10/19 (52%), Frame = +2
Query: 113 SNDDGPVEWASYWKPNITI 169
+ND V+W +K I I
Sbjct: 301 ANDQDMVDWIINFKSGILI 319
>gi|7294392|gb|AAF49739.1| (AE003534) CG9598 gene product [Drosophila
melanogaster]
Length = 1100
Frame 2 hits (HSPs): __ __
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | | | | 1100
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 47 (16.5 bits), Expect = 3.1, Sum P(3) = 0.95
Identities = 8/17 (47%), Positives = 13/17 (76%), Frame = +1
Query: 127 SCGVGFILETKYNNKLG 177
SCG+GF +E +++ LG
Sbjct: 1024 SCGLGFSIEGGFDSPLG 1040
Score = 36 (12.7 bits), Expect = 3.1, Sum P(3) = 0.95
Identities = 7/16 (43%), Positives = 10/16 (62%), Frame = +2
Query: 8 PKSQADKKKSLLGGSP 55
P D ++SL GG+P
Sbjct: 185 PSLTRDYQRSLSGGTP 200
Score = 31 (10.9 bits), Expect = 3.1, Sum P(3) = 0.95
Identities = 6/15 (40%), Positives = 10/15 (66%), Frame = +2
Query: 77 TSKVVDESEDDDSND 121
++K + ED+DS D
Sbjct: 568 SAKSRGQEEDNDSTD 582
>gi|7706735 ref|NP_056943.1| TFIIA alpha, p55 >gi|1711663|sp|P52655|T2AA_HUMAN
TRANSCRIPTION INITIATION FACTOR IIA ALPHA AND BETA CHAINS (TFIIA
P35 AND P19 SUBUNITS) (TFIIA-42) (TFIIAL) >gi|627655|pir||A49077
transcription initiation factor IIA alpha chain precursor - human
>gi|433500|emb|CAA53151.1| (X75383) TFIIA [Homo sapiens]
>gi|452272|emb|CAA54442.1| (X77225) TFIIA/alpha, p55 [Homo sapiens]
>gi|727197|dbj|BAA03604.1| (D14887) 'TFIIA-42' [Homo sapiens]
>gi|6721137|gb|AAF26776.1|AC010582_2 (AC010582) TFIIA-42 [Homo
sapiens]
Length = 376
Frame -1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 376
0 150 300
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 3.1, P = 0.96
Identities = 14/33 (42%), Positives = 19/33 (57%), Frame = -1
Query: 185 SQQPSLLLYLVSNMKPTPQDHHH*NHHLQIHQP 87
S++ LLL + +P Q HHH +HH Q QP
Sbjct: 61 SEEQQLLLQVQQQHQPQQQQHHHHHHHQQA-QP 92
>gi|2149996|gb|AAB58716.1| (AF000943) TFIIA large subunit [Rattus norvegicus]
Length = 377
Frame -1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 377
0 150 300
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 3.1, P = 0.96
Identities = 14/33 (42%), Positives = 19/33 (57%), Frame = -1
Query: 185 SQQPSLLLYLVSNMKPTPQDHHH*NHHLQIHQP 87
S++ LLL + +P Q HHH +HH Q QP
Sbjct: 61 SEEQQLLLQVQQQHQPQQQQHHHHHHHQQA-QP 92
>gi|6561995|emb|CAB62484.1| (AL133363) hypothetical protein [Arabidopsis
thaliana]
Length = 95
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 95
0 20 40 60 80
Plus Strand HSPs:
Score = 59 (20.8 bits), Expect = 3.3, P = 0.96
Identities = 12/38 (31%), Positives = 20/38 (52%), Frame = +2
Query: 23 DKKKSLLGGSPDSSEAQVTSKVVDESEDDDSNDDGPVE 136
++ ++L G +SSE T D +DD+ +DD E
Sbjct: 38 EEDRNLSGDDSESSEDDYTDSNSDSDDDDEEDDDDEEE 75
>gi|806994|gb|AAB32547.1| (S74564) rheumatoid factor RF1-7=IgM autoantibody
kappa chain variable region {clone RF1-7K} [mice, MRL/lpr, spleen,
B cell hybridoma, Peptide Partial Mutant, 109 aa] [Mus sp.]
Length = 109
Frame -1 hits (HSPs): _______
Frame -3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | 109
0 20 40 60 80 100
Minus Strand HSPs:
Score = 45 (15.8 bits), Expect = 3.7, Sum P(2) = 0.98
Identities = 8/14 (57%), Positives = 12/14 (85%), Frame = -1
Query: 182 QQPSLLLYLVSNMK 141
Q P LL+Y+VSN++
Sbjct: 46 QPPRLLIYVVSNLE 59
Score = 31 (10.9 bits), Expect = 3.7, Sum P(2) = 0.98
Identities = 6/17 (35%), Positives = 9/17 (52%), Frame = -3
Query: 126 PSSLESSSSDSSTTLDV 76
P+ S S + TLD+
Sbjct: 63 PARFSGSGSGTDFTLDI 79
>gi|540872|pir||JQ2384 rev protein - feline immunodeficiency virus
>gi|455722|gb|AAB28971.1| (S67436) Rev=regulatory protein
{alternatively spliced} [feline immunodeficiency virus FIV, TM2,
Peptide, 148 aa] [Feline immunodeficiency virus]
Length = 148
Frame 2 hits (HSPs): _____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
DOMO DM04773: FIVNEFPROTEIN 1..71
DOMO DM02889: FIVNEFPROTEIN 73..147
__________________
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 4.0, P = 0.98
Identities = 11/36 (30%), Positives = 17/36 (47%), Frame = +2
Query: 77 TSKVVDESEDDDSNDDGPVEWASYWKPNITINLVAD 184
T DE+E+ S + V+W YW P ++ D
Sbjct: 113 TPSTTDETEEKTSAKEKRVDWEDYWDPEEIEKMLMD 148
>gi|3970854|dbj|BAA34791.1| (AB015332) HRIHFB2018 [Homo sapiens]
Length = 373
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 373
0 150 300
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 4.0, P = 0.98
Identities = 14/34 (41%), Positives = 20/34 (58%), Frame = +2
Query: 26 KKKSLLGGSPDSSEAQVTSKVVDESEDDDSNDDG 127
KKK GGSPD +++ T ++ D D ND+G
Sbjct: 290 KKKRKQGGSPDEPDSKATRTDCSDNSDSD-NDEG 322
>gi|7295764|gb|AAF51067.1| (AE003578) CG10019 gene product [Drosophila
melanogaster]
Length = 1131
Frame -1 hits (HSPs): __
Frame -2 hits (HSPs): _
__________________________________________________
Database sequence: | | | | | | | | | 1131
0 150 300 450 600 750 900 1050
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 4.2, Sum P(2) = 0.99
Identities = 12/26 (46%), Positives = 15/26 (57%), Frame = -1
Query: 161 YLVSNMKPTPQDHH-H*NHHLQIHQP 87
Y+ + M P Q HH H +HH Q H P
Sbjct: 274 YMYNPMPPAHQSHHQHDHHHAQQHHP 299
Score = 30 (10.6 bits), Expect = 4.2, Sum P(2) = 0.99
Identities = 8/13 (61%), Positives = 9/13 (69%), Frame = -2
Query: 40 QTFLFICL*LGQV 2
QTFL I + LG V
Sbjct: 683 QTFLGISMALGVV 695
>gi|90157|pir||A25345 troponin T, cardiac muscle, major isoform - rabbit
Length = 276
Frame 2 hits (HSPs): ___________
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | | | | 276
0 50 100 150 200 250
__________________
Annotated Domains:
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 217..238
__________________
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 4.3, P = 0.99
Identities = 20/57 (35%), Positives = 31/57 (54%), Frame = +2
Query: 11 KSQADKKKSLLGGSPDSSEAQVTSKVVDESEDDDSND-DGPVEWASYWKPNITI-NLV 178
+ +A +++ GG+ +E + T D E++D D DGPVE S KP + NLV
Sbjct: 16 EQEAGEEEEAGGGAEAEAETEETQAEEDGQEEEDKEDEDGPVE-ESKPKPRPFMPNLV 72
>gi|6678621 ref|NP_033563.1| YY1 transcription factor >gi|1083540|pir||A56418
transcription factor delta - mouse >gi|192941|gb|AAA37521.1|
(M74590) delta-transcription factor [Mus musculus]
Length = 414
Frame -1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 414
0 150 300
Minus Strand HSPs:
Score = 67 (23.6 bits), Expect = 4.6, P = 0.99
Identities = 10/20 (50%), Positives = 14/20 (70%), Frame = -1
Query: 125 HHH*NHHLQIHQPPWMSLEP 66
HHH +HH H PP ++L+P
Sbjct: 71 HHHHHHHHHHHHPPMIALQP 90
>gi|1174842|sp|Q00899|TYY1_MOUSE TRANSCRIPTIONAL REPRESSOR PROTEIN YY1 (YIN AND
YANG 1) (YY-1) (DELTA TRANSCRIPTION FACTOR) (NF-E1) (UCR-MOTIF
DNA-BINDING PROTEIN) >gi|2137259|pir||A48273 delta/YY1/NF-E1/UCRBP
transcription factor - mouse >gi|202271|gb|AAA40522.1| (M73963)
UCR-motif DNA binding protein [Mus musculus]
>gi|293849|gb|AAA40477.1| (L13968) delta/YY1/NF-E1/UCRBP
transcription factor [Mus musculus]
Length = 414
Frame -1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 414
0 150 300
Minus Strand HSPs:
Score = 67 (23.6 bits), Expect = 4.6, P = 0.99
Identities = 10/20 (50%), Positives = 14/20 (70%), Frame = -1
Query: 125 HHH*NHHLQIHQPPWMSLEP 66
HHH +HH H PP ++L+P
Sbjct: 71 HHHHHHHHHHHHPPMIALQP 90
>gi|7507075|pir||T24446 hypothetical protein T04C10.4 - Caenorhabditis elegans
>gi|3879473|emb|CAA93757.1| (Z69885) Similarity to Human
transcription factor ATF-4 (SW:ATF4_HUMAN)~cDNA EST EMBL:Z14931
comes from this gene~cDNA EST EMBL:D32684 comes from this gene~cDNA
EST EMBL:T01302 comes from this gene~cDNA EST EMBL:D35394 comes
from this gene~cDNA EST yk2>
Length = 208
Frame -1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 4.6, P = 0.99
Identities = 15/33 (45%), Positives = 19/33 (57%), Frame = -1
Query: 182 QQPSLLLY--LVSNMKPTPQDHHH*NHHLQIHQPP 84
Q P LLY + + TPQ H+H +HH HQ P
Sbjct: 7 QNPQFLLYNGMHNQTHSTPQYHNHHHHH---HQSP 38
>gi|7620979|gb|AAF64840.1|AF232376_1 (AF232376) Sic1.71 [Streptococcus
pyogenes]
Length = 290
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | 290
0 50 100 150 200 250
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 4.6, P = 0.99
Identities = 17/41 (41%), Positives = 22/41 (53%), Frame = +2
Query: 35 SLLGGSPDSSEAQVTSKVVDESEDDDSNDDGPVE-WASY-W 151
+LLG + S TS+ D S DD S DD P + W+ Y W
Sbjct: 22 ALLGATQPVSAETYTSRNFDWSGDDWSGDDWPEDDWSKYGW 62
>gi|5306160|gb|AAD41944.1|AF160864_32 (AF160864) NADH dehydrogenase subunit 5
[Tetrahymena pyriformis]
Length = 755
Frame -1 hits (HSPs): __
Frame -2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | || 755
0 150 300 450 600 750
Minus Strand HSPs:
Score = 59 (20.8 bits), Expect = 4.7, Sum P(2) = 0.99
Identities = 11/29 (37%), Positives = 21/29 (72%), Frame = -2
Query: 169 YCYIWFPI*SPLHRTIIIRIIIFRFINHL 83
YC + F I +PL+ T++++ II+ +IN +
Sbjct: 87 YCKVIFNI-APLYLTLLVKNIIYLYINFI 114
Score = 32 (11.3 bits), Expect = 4.7, Sum P(2) = 0.99
Identities = 6/13 (46%), Positives = 7/13 (53%), Frame = -1
Query: 59 NLVNLPTDFSFYL 21
NL LP FY+
Sbjct: 566 NLSGLPLTLGFYI 578
>gi|1352439|sp|P48724|IF5_PHAVU EUKARYOTIC TRANSLATION INITIATION FACTOR 5
(EIF-5) >gi|7488764|pir||T11804 eukaryotic translation initiation
factor 5 - kidney bean >gi|1008881|gb|AAA92861.1| (L47221)
eukaryotic initiation factor 5 [Phaseolus vulgaris]
Length = 443
Frame 2 hits (HSPs): _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 443
0 150 300
__________________
Annotated Domains:
DOMO DM03318: GTPNP_BIND 1..442
Entrez np-binding site: GTP (POTENTIAL). 29..36
Entrez Domain: POLY-ASP. 229..236
Entrez Domain: POLY-LYS. 274..277
PFAM eIF5_eIF2B: Domain found in IF2B/IF5 1..131
PRODOM PD004078: IF2B(10) IF5(7) 10..126
PRODOM PD037964: IF5(2) 128..216
PRODOM PD006913: IF5(7) Q15394(1) O49733(1) 240..435
__________________
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 5.0, P = 0.99
Identities = 17/43 (39%), Positives = 22/43 (51%), Frame = +2
Query: 11 KSQADKKKSLLGGSPDSSEAQVTSKVVDESE---DDDSNDDGPVEW 139
KS KKK G D T K ++E E D+D +DD V+W
Sbjct: 198 KSTISKKK---GSGSDEDRRSPTHKQIEEKEEAKDEDDDDDDGVQW 240
>gi|7518728|pir||H71173 hypothetical protein PH0588 - Pyrococcus horikoshii
>gi|3256994|dbj|BAA29677.1| (AP000002) 626aa long hypothetical
protein [Pyrococcus horikoshii]
Length = 626
Frame 3 hits (HSPs): _
Frame 2 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 626
0 150 300 450 600
Plus Strand HSPs:
Score = 51 (18.0 bits), Expect = 5.1, Sum P(2) = 0.99
Identities = 12/42 (28%), Positives = 20/42 (47%), Frame = +2
Query: 11 KSQADKKKSLLGGSPDSSEAQVTSKVVDESEDDDSNDDGPVE 136
KSQ +K+S SP + VD+++ + + PVE
Sbjct: 27 KSQEKQKQSKASTSPPQPSPPIPESTVDKTQIQKFSKEEPVE 68
Score = 38 (13.4 bits), Expect = 5.1, Sum P(2) = 0.99
Identities = 5/12 (41%), Positives = 10/12 (83%), Frame = +3
Query: 126 VLWSGLHIGNQI 161
++W+ LH+G +I
Sbjct: 377 IVWNKLHLGAEI 388
>gi|2584819|gb|AAB82733.1| (U86868) non-structural protein 1 [chipmunk
parvovirus]
Length = 711
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | 711
0 150 300 450 600
Plus Strand HSPs:
Score = 69 (24.3 bits), Expect = 5.4, P = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Frame = +2
Query: 41 LGGSPDSSEAQVTSKVVDESEDDDSNDDG 127
LGGSP + + T DE EDDD++ G
Sbjct: 558 LGGSPAPAVSSTTESSADEDEDDDTSSSG 586
>gi|7621249|gb|AAF64975.1|AF232511_1 (AF232511) Sic1.206 [Streptococcus
pyogenes]
Length = 276
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 276
0 50 100 150 200 250
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 5.6, P = 1.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Frame = +2
Query: 35 SLLGGSPDSSEAQVTSKVVDESEDDDSNDDGPVEW 139
+LLG + S TS+ D S DD S DD P +W
Sbjct: 22 ALLGATQPVSAETYTSRNFDWSGDDWSGDDWPEDW 56
>gi|4056488|gb|AAC98054.1| (AC005896) unknown protein [Arabidopsis thaliana]
Length = 249
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 249
0 50 100 150 200
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 6.1, P = 1.0
Identities = 19/53 (35%), Positives = 24/53 (45%), Frame = +2
Query: 8 PKSQADKKKSLLGGSP-DSSEAQVTSKVVDESEDDDSNDDGPVEWASYWKPNIT 166
PK Q + GGSP D+ V S VV D D PV+ ++PN T
Sbjct: 190 PKLQKEVGSDRDGGSPQDNGRNSVVSPVVGAGGDSSKEDRSPVD--DDYEPNRT 241
>gi|420088|pir||B34735 protein-tyrosine kinase (EC 2.7.1.112) (ret) - human
(fragment)
Length = 402
Frame -3 hits (HSPs): _____ ___
Annotated Domains: _____________________________________
__________________________________________________
Database sequence: | | | | 402
0 150 300
__________________
Annotated Domains:
Entrez domain: protein kinase homology #label K 10..300
Entrez region: protein kinase ATP-binding motif 18..26
PROSITE PROTEIN_KINASE_TYR: Tyrosine protein kin 158..170
__________________
Minus Strand HSPs:
Score = 51 (18.0 bits), Expect = 6.1, Sum P(2) = 1.0
Identities = 12/32 (37%), Positives = 18/32 (56%), Frame = -3
Query: 174 KFIVIFGFQYEAHSTGPSSLESSSSDSSTTLD 79
K+ + GF E+ GP L S S +S++LD
Sbjct: 96 KYGSLRGFLRESRKVGPGYLGSGGSRNSSSLD 127
Score = 33 (11.6 bits), Expect = 6.1, Sum P(2) = 1.0
Identities = 7/10 (70%), Positives = 7/10 (70%), Frame = -3
Query: 54 GEPPNRLFFL 25
G PP RLF L
Sbjct: 242 GIPPERLFNL 251
>gi|7499127|pir||T20931 hypothetical protein F14H3.6 - Caenorhabditis elegans
>gi|5824456|emb|CAB05487.2| (Z83105) cDNA EST EMBL:D68878 comes
from this gene~cDNA EST EMBL:C09019 comes from this gene~cDNA EST
EMBL:C08332 comes from this gene~cDNA EST EMBL:C10040 comes from
this gene~cDNA EST EMBL:C10083 comes from this gene~cDNA EST
yk263c7.5 comes from thi>
Length = 245
Frame 2 hits (HSPs): ____ ____
__________________________________________________
Database sequence: | | | | | | 245
0 50 100 150 200
Plus Strand HSPs:
Score = 46 (16.2 bits), Expect = 6.2, Sum P(2) = 1.0
Identities = 7/14 (50%), Positives = 9/14 (64%), Frame = +2
Query: 104 DDDSNDDGPVEWAS 145
D D +DDGP W +
Sbjct: 225 DGDDDDDGPGNWGN 238
Score = 33 (11.6 bits), Expect = 6.2, Sum P(2) = 1.0
Identities = 8/20 (40%), Positives = 8/20 (40%), Frame = +2
Query: 44 GGSPDSSEAQVTSKVVDESE 103
GG D E V V E E
Sbjct: 21 GGGNDGQEEDVQMAEVSEQE 40
WARNING: HSPs involving 35 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.88
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.353 0.150 0.589
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.302 0.124 0.352 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.417 0.196 0.906
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.343 0.148 0.545
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.361 0.163 0.620
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.330 0.140 0.410
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 64 64 10. 57 3 12 22 0.11 30
27 0.12 30
+2 0 64 63 10. 57 3 12 23 0.11 31
26 0.084 31
+1 0 64 63 10. 57 3 12 22 0.11 30
26 0.12 30
-1 0 64 64 10. 57 3 12 22 0.11 30
27 0.12 30
-2 0 64 64 10. 57 3 12 22 0.11 30
27 0.12 30
-3 0 64 63 10. 57 3 12 22 0.11 30
26 0.12 30
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 85
No. of states in DFA: 583 (57 KB)
Total size of DFA: 118 KB (128 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 93.83u 1.24s 95.07t Elapsed: 00:00:24
Total cpu time: 93.88u 1.31s 95.19t Elapsed: 00:00:24
Start: Thu Feb 15 01:32:48 2001 End: Thu Feb 15 01:33:12 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000