BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= pPI0455
(402 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34540611|ref|NP_905090.1| integrase [Porphyromonas gingi... 649 0.0
gi|53712575|ref|YP_098567.1| tyrosine type site-specific re... 609 e-172
gi|8347627|gb|AAF74726.1|AF251288_3 integrase [Bacteroides ... 606 e-171
gi|153807870|ref|ZP_01960538.1| hypothetical protein BACCAC... 587 e-166
gi|150004298|ref|YP_001299042.1| integrase [Bacteroides vul... 253 1e-65
gi|86130630|ref|ZP_01049230.1| integrase [Cellulophaga sp. ... 137 2e-30
gi|15072716|emb|CAC47923.1| putative integrase [Bacteroides... 125 4e-27
gi|89891088|ref|ZP_01202596.1| putative integrase [Flavobac... 125 5e-27
gi|156110579|gb|EDO12324.1| hypothetical protein BACOVA_018... 120 2e-25
gi|53712631|ref|YP_098623.1| tyrosine type site-specific re... 119 3e-25
gi|120435029|ref|YP_860715.1| phage integrase family protei... 119 5e-25
gi|29348887|ref|NP_812390.1| integrase [Bacteroides thetaio... 118 8e-25
gi|29345486|ref|NP_808989.1| transposase [Bacteroides theta... 114 8e-24
gi|150005005|ref|YP_001299749.1| putative transposase [Bact... 112 4e-23
gi|60680742|ref|YP_210886.1| putative transposase [Bacteroi... 110 1e-22
gi|34541110|ref|NP_905589.1| integrase [Porphyromonas gingi... 110 2e-22
gi|156862827|gb|EDO56258.1| hypothetical protein BACUNI_000... 108 7e-22
gi|88805941|ref|ZP_01121459.1| tyrosine type site-specific ... 107 9e-22
gi|29350147|ref|NP_813650.1| transposase [Bacteroides theta... 107 1e-21
gi|146302080|ref|YP_001196671.1| phage integrase family pro... 107 1e-21
gi|150004634|ref|YP_001299378.1| transposase [Bacteroides v... 105 5e-21
gi|88804063|ref|ZP_01119583.1| integrase [Robiginitalea bif... 102 3e-20
gi|29347687|ref|NP_811190.1| transposase [Bacteroides theta... 102 5e-20
gi|29347986|ref|NP_811489.1| transposase [Bacteroides theta... 100 2e-19
gi|86130576|ref|ZP_01049176.1| putative transposase [Cellul... 99 7e-19
gi|156109291|gb|EDO11036.1| hypothetical protein BACOVA_029... 97 2e-18
gi|86143473|ref|ZP_01061858.1| tyrosine type site-specific ... 96 4e-18
gi|53711947|ref|YP_097939.1| tyrosine type site-specific re... 95 7e-18
gi|124004236|ref|ZP_01689082.1| transposase, putative [Micr... 95 7e-18
gi|124004365|ref|ZP_01689211.1| transposase, putative [Micr... 95 8e-18
gi|124008731|ref|ZP_01693421.1| transposase, putative [Micr... 95 9e-18
gi|124005636|ref|ZP_01690475.1| transposase, putative [Micr... 93 3e-17
gi|60681592|ref|YP_211736.1| putative bacteriophage integra... 93 3e-17
gi|67940412|ref|ZP_00532834.1| Phage integrase [Chlorobium ... 92 6e-17
gi|150003228|ref|YP_001297972.1| transposase [Bacteroides v... 92 7e-17
gi|153808509|ref|ZP_01961177.1| hypothetical protein BACCAC... 92 7e-17
gi|154494486|ref|ZP_02033806.1| hypothetical protein PARMER... 91 1e-16
gi|53713347|ref|YP_099339.1| tyrosine type site-specific re... 91 2e-16
gi|150010411|ref|YP_001305154.1| transposase [Parabacteroid... 91 2e-16
gi|154493767|ref|ZP_02033087.1| hypothetical protein PARMER... 90 2e-16
gi|150004164|ref|YP_001298908.1| transposase [Bacteroides v... 90 2e-16
gi|54307145|ref|YP_133699.1| IntN1 [Bacteroides uniformis] ... 89 7e-16
gi|53713277|ref|YP_099269.1| tyrosine type site-specific re... 88 1e-15
gi|1263306|gb|AAB06447.1| integrase IntN1 [Bacteroides unif... 87 2e-15
gi|150009849|ref|YP_001304592.1| transposase [Parabacteroid... 87 2e-15
gi|154491478|ref|ZP_02031104.1| hypothetical protein PARMER... 86 3e-15
gi|53713608|ref|YP_099600.1| tyrosine type site-specific re... 86 3e-15
gi|150008853|ref|YP_001303596.1| transposase [Parabacteroid... 86 4e-15
gi|29346548|ref|NP_810051.1| transposase [Bacteroides theta... 86 6e-15
gi|83857491|ref|ZP_00951019.1| putative transposase [Crocei... 85 7e-15
gi|150005337|ref|YP_001300081.1| integrase protein [Bactero... 85 8e-15
gi|154492102|ref|ZP_02031728.1| hypothetical protein PARMER... 84 1e-14
gi|3930211|gb|AAC80279.1| transposase [Bacteroides fragilis] 84 2e-14
gi|153809442|ref|ZP_01962110.1| hypothetical protein BACCAC... 82 6e-14
gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific ... 81 1e-13
gi|60681287|ref|YP_211431.1| putative bacteriophage integra... 80 2e-13
gi|153807337|ref|ZP_01960005.1| hypothetical protein BACCAC... 80 2e-13
gi|156859706|gb|EDO53137.1| hypothetical protein BACUNI_031... 80 2e-13
gi|153809551|ref|ZP_01962219.1| hypothetical protein BACCAC... 80 3e-13
gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides... 79 6e-13
gi|150007906|ref|YP_001302649.1| site-specific recombinase ... 77 2e-12
gi|154491554|ref|ZP_02031180.1| hypothetical protein PARMER... 77 2e-12
gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC... 76 3e-12
gi|154495261|ref|ZP_02034266.1| hypothetical protein PARMER... 76 4e-12
gi|156859929|gb|EDO53360.1| hypothetical protein BACUNI_033... 75 5e-12
gi|60681325|ref|YP_211469.1| putative bacteriophage integra... 75 6e-12
gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_030... 75 7e-12
gi|120436834|ref|YP_862520.1| phage integrase family protei... 75 7e-12
gi|126661716|ref|ZP_01732715.1| tyrosine type site-specific... 75 8e-12
gi|29348544|ref|NP_812047.1| integrase [Bacteroides thetaio... 75 8e-12
gi|53713278|ref|YP_099270.1| tyrosine type site-specific re... 74 1e-11
gi|154492804|ref|ZP_02032430.1| hypothetical protein PARMER... 74 1e-11
gi|150006208|ref|YP_001300952.1| tyrosine type site-specifi... 74 2e-11
gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides... 74 2e-11
gi|154495043|ref|ZP_02034048.1| hypothetical protein PARMER... 73 3e-11
gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_009... 73 3e-11
gi|150010080|ref|YP_001304823.1| integrase [Parabacteroides... 73 4e-11
gi|29349417|ref|NP_812920.1| integrase [Bacteroides thetaio... 72 6e-11
gi|124008268|ref|ZP_01692964.1| transposase, putative [Micr... 72 6e-11
gi|53714292|ref|YP_100284.1| tyrosine type site-specific re... 72 9e-11
gi|156859288|gb|EDO52719.1| hypothetical protein BACUNI_035... 71 1e-10
gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaio... 71 2e-10
gi|150008748|ref|YP_001303491.1| integrase [Parabacteroides... 70 2e-10
gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_046... 70 2e-10
gi|150007408|ref|YP_001302151.1| putative phage integrase [... 70 3e-10
gi|29347338|ref|NP_810841.1| transposase [Bacteroides theta... 70 4e-10
gi|156860150|gb|EDO53581.1| hypothetical protein BACUNI_028... 70 4e-10
gi|91217859|ref|ZP_01254813.1| tyrosine type site-specific ... 69 4e-10
gi|83815635|ref|YP_444738.1| Phage integrase family protein... 69 6e-10
gi|53711957|ref|YP_097949.1| tyrosine type site-specific re... 69 7e-10
gi|150006223|ref|YP_001300967.1| transposase [Bacteroides v... 69 7e-10
gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides... 68 9e-10
gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_000... 68 1e-09
gi|150004395|ref|YP_001299139.1| tyrosine type site-specifi... 68 1e-09
gi|88710848|ref|ZP_01104936.1| integrase [Flavobacteriales ... 68 1e-09
gi|156862826|gb|EDO56257.1| hypothetical protein BACUNI_000... 68 1e-09
gi|60683282|ref|YP_213426.1| putative phage integrase [Bact... 68 1e-09
gi|53711443|ref|YP_097435.1| tyrosine type site-specific re... 67 2e-09
gi|146298371|ref|YP_001192962.1| phage integrase family pro... 67 3e-09
gi|15072714|emb|CAC47921.1| integrase protein [Bacteroides ... 66 4e-09
gi|83814942|ref|YP_445217.1| Phage integrase family protein... 66 4e-09
gi|153838484|ref|ZP_01991151.1| integrase [Vibrio parahaemo... 65 6e-09
gi|34540596|ref|NP_905075.1| integrase [Porphyromonas gingi... 65 6e-09
gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaio... 65 1e-08
gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_054... 64 2e-08
gi|60681762|ref|YP_211906.1| putative phage integrase [Bact... 64 2e-08
gi|150004923|ref|YP_001299667.1| transposase [Bacteroides v... 64 2e-08
gi|60681034|ref|YP_211178.1| putative integrase [Bacteroide... 63 3e-08
gi|154492975|ref|ZP_02032601.1| hypothetical protein PARMER... 63 4e-08
gi|150010096|ref|YP_001304839.1| site-specific recombinase ... 62 5e-08
gi|153809553|ref|ZP_01962221.1| hypothetical protein BACCAC... 62 8e-08
gi|150005457|ref|YP_001300201.1| integrase [Bacteroides vul... 62 9e-08
gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae ... 61 1e-07
gi|150009561|ref|YP_001304304.1| site-specific recombinase ... 61 1e-07
gi|119357861|ref|YP_912505.1| phage integrase family protei... 60 2e-07
gi|60682252|ref|YP_212396.1| putative recombinase/integrase... 60 4e-07
gi|53714058|ref|YP_100050.1| tyrosine type site-specific re... 59 4e-07
gi|83855510|ref|ZP_00949039.1| tyrosine type site-specific ... 59 5e-07
gi|120435520|ref|YP_861206.1| phage integrase family protei... 59 6e-07
gi|29349423|ref|NP_812926.1| transposase [Bacteroides theta... 59 7e-07
gi|150007898|ref|YP_001302641.1| transposase [Parabacteroid... 59 7e-07
gi|150004653|ref|YP_001299397.1| tyrosine type site-specifi... 59 7e-07
gi|154491051|ref|ZP_02030992.1| hypothetical protein PARMER... 58 9e-07
gi|153809550|ref|ZP_01962218.1| hypothetical protein BACCAC... 58 1e-06
gi|153808763|ref|ZP_01961431.1| hypothetical protein BACCAC... 57 2e-06
gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_020... 57 2e-06
gi|53712967|ref|YP_098959.1| tyrosine type site-specific re... 57 3e-06
gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica su... 56 4e-06
gi|156860014|gb|EDO53445.1| hypothetical protein BACUNI_027... 56 5e-06
gi|120600872|ref|YP_965446.1| phage integrase family protei... 56 5e-06
gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformi... 55 6e-06
gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_047... 55 9e-06
>gi|34540611|ref|NP_905090.1| integrase [Porphyromonas gingivalis W83]
gi|34396924|gb|AAQ65989.1| integrase [Porphyromonas gingivalis W83]
Length = 432
Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats.
Identities = 317/404 (78%), Positives = 361/404 (89%), Gaps = 2/404 (0%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
MRVNFAS+RIEFTTGYRID AKWDADKQRVKNGC+NKLKQSASEINA+LL YYTE+Q +F
Sbjct: 29 MRVNFASQRIEFTTGYRIDVAKWDADKQRVKNGCTNKLKQSASEINAALLGYYTELQEVF 88
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKP--VSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNW 118
KRFEV +VMP+P +K AFNA H+ V E K +F++ FD+FV CGRQN+W
Sbjct: 89 KRFEVAEVMPSPADVKSAFNARHRSDDVQTEQTSDKPDASAEFYKAFDEFVRVCGRQNDW 148
Query: 119 TDSTFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWF 178
T +T+EKFAAVKNHL +FR L+F FF+E GL +YV YLR+V++MRN+TIGKQLSFLKWF
Sbjct: 149 THATYEKFAAVKNHLRSFRADLSFSFFNEVGLTEYVRYLREVRKMRNSTIGKQLSFLKWF 208
Query: 179 LRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFL 238
LRW+F +G+H NNAYD+++PKLK TQKKIIFLTW+EL +LREF+IP KQ+L+RVRDVFL
Sbjct: 209 LRWSFGQGIHSNNAYDTFRPKLKDTQKKIIFLTWEELTKLREFEIPPAKQSLDRVRDVFL 268
Query: 239 FQCFTGLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDK 298
FQCFTGLRYSDV+NLRRSDIK+DHIEVTT+KTSDSL+IELN HSKAIL+KY+DV FE DK
Sbjct: 269 FQCFTGLRYSDVYNLRRSDIKEDHIEVTTIKTSDSLVIELNKHSKAILEKYQDVVFEHDK 328
Query: 299 VLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICN 358
LPVITNQKMN+YLKELAELAGI+EPIRQTYYKGNERID+VTPKYALLGTHAGRRTFICN
Sbjct: 329 ALPVITNQKMNEYLKELAELAGINEPIRQTYYKGNERIDEVTPKYALLGTHAGRRTFICN 388
Query: 359 ALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQL 402
ALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQL
Sbjct: 389 ALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQL 432
>gi|53712575|ref|YP_098567.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|150005004|ref|YP_001299748.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
gi|153807829|ref|ZP_01960497.1| hypothetical protein BACCAC_02113 [Bacteroides caccae ATCC 43185]
gi|52215440|dbj|BAD48033.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|149129438|gb|EDM20652.1| hypothetical protein BACCAC_02113 [Bacteroides caccae ATCC 43185]
gi|149933428|gb|ABR40126.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
Length = 430
Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats.
Identities = 302/402 (75%), Positives = 350/402 (87%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
MRV FAS+RIEFTTGYRID+ KWD DKQRVKNGC+NKLK SASEINA LL YTEIQ+IF
Sbjct: 29 MRVIFASQRIEFTTGYRIDATKWDTDKQRVKNGCTNKLKLSASEINADLLRQYTEIQNIF 88
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTD 120
K FEV++V+PTP QIK +FNA K + E F++ F++FV +CG+QN+WTD
Sbjct: 89 KEFEVQNVLPTPAQIKDSFNARMKDAPVTEQETAEGPKISFWEAFEEFVRECGKQNDWTD 148
Query: 121 STFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLR 180
+T+EKFAAVKNHL FR+ L+F+ F E GLNDYV +LR+ K+MRN+TIGKQ++FLKWFLR
Sbjct: 149 ATYEKFAAVKNHLKEFRDELSFDTFTENGLNDYVDFLRNKKDMRNSTIGKQIAFLKWFLR 208
Query: 181 WAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQ 240
W+FKKG +QN AYDS+KPKLK+T KK+IFLTW+ELNRL+++KIP KQ LERVRDVFLF
Sbjct: 209 WSFKKGYNQNMAYDSFKPKLKNTPKKVIFLTWEELNRLKDYKIPQTKQYLERVRDVFLFC 268
Query: 241 CFTGLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVL 300
CF+GLRYSDV+NL+RSDIK DHIEVTTVKT+DSLIIELNNHSKAIL+KYK V FED K L
Sbjct: 269 CFSGLRYSDVYNLKRSDIKPDHIEVTTVKTADSLIIELNNHSKAILEKYKSVHFEDHKAL 328
Query: 301 PVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNAL 360
PVI+NQKMNDYLKEL ELA I++P+R+TYYKGNERID VTPKYALLGTHAGRRTFICNAL
Sbjct: 329 PVISNQKMNDYLKELGELAEINDPVRETYYKGNERIDTVTPKYALLGTHAGRRTFICNAL 388
Query: 361 ALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQL 402
ALGIP QVVMKWTGHSDYKAMKPYID+ADDIKANAM+KFNQL
Sbjct: 389 ALGIPAQVVMKWTGHSDYKAMKPYIDVADDIKANAMNKFNQL 430
>gi|8347627|gb|AAF74726.1|AF251288_3 integrase [Bacteroides fragilis]
Length = 427
Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats.
Identities = 301/402 (74%), Positives = 352/402 (87%), Gaps = 3/402 (0%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
MRV FAS+RIEFTTGYRID AKWDADKQRVK+GC+NKLKQSA+EIN LL+YY EIQ+IF
Sbjct: 29 MRVIFASQRIEFTTGYRIDVAKWDADKQRVKSGCTNKLKQSAAEINTDLLKYYAEIQNIF 88
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTD 120
K FEV++VMPT +Q+K+AFN K SEE + E P F++VFD+FV++CG QNNWT
Sbjct: 89 KEFEVQEVMPTTQQLKEAFNMRMKDTSEE---QPEEAPVSFWEVFDEFVKECGNQNNWTA 145
Query: 121 STFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLR 180
ST+EKFAAV+NHL F+E TF +F+E GLN+YV +LRD K+MRN+TIGKQ+ FLKWFLR
Sbjct: 146 STYEKFAAVRNHLKEFKEDATFNYFNEFGLNEYVNFLRDTKDMRNSTIGKQMGFLKWFLR 205
Query: 181 WAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQ 240
W+FKKG HQN AYD++KPKLK+T KK+IFLTWDELN+L++++IP +KQ LERVRDVFLF
Sbjct: 206 WSFKKGHHQNIAYDTFKPKLKTTSKKVIFLTWDELNKLKDYQIPKDKQYLERVRDVFLFC 265
Query: 241 CFTGLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVL 300
CFT LRYSDV NL+RSD+K DHIE+TTVKT+DSL IELN +SKAILDKYKD+ FE+ L
Sbjct: 266 CFTSLRYSDVRNLKRSDVKSDHIEITTVKTADSLTIELNKYSKAILDKYKDIHFENYMAL 325
Query: 301 PVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNAL 360
PVI+NQKMNDYLKEL ELA I+EP+R+TYYKGNERID+VTPKYALL THAGRRTFICNAL
Sbjct: 326 PVISNQKMNDYLKELGELAEINEPVRETYYKGNERIDEVTPKYALLSTHAGRRTFICNAL 385
Query: 361 ALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQL 402
ALGIP QVVMKWTGHSDYKAMKPYIDIADDIKANAM+KFNQL
Sbjct: 386 ALGIPAQVVMKWTGHSDYKAMKPYIDIADDIKANAMNKFNQL 427
>gi|153807870|ref|ZP_01960538.1| hypothetical protein BACCAC_02155 [Bacteroides caccae ATCC 43185]
gi|149129479|gb|EDM20693.1| hypothetical protein BACCAC_02155 [Bacteroides caccae ATCC 43185]
Length = 427
Score = 587 bits (1512), Expect = e-166, Method: Composition-based stats.
Identities = 300/402 (74%), Positives = 354/402 (88%), Gaps = 3/402 (0%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
MRV +AS+RIEFTTGYRID AKWDADKQRVKNGC+NKLKQSASEINA LL+YY E+Q++F
Sbjct: 29 MRVIYASQRIEFTTGYRIDVAKWDADKQRVKNGCTNKLKQSASEINADLLKYYAEMQNVF 88
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTD 120
K FEV++ MPT +Q+K AFN K SEE ++E F++VFD+FV++CG QNNWT
Sbjct: 89 KEFEVQETMPTTQQLKDAFNLRMKDNSEE---QQEEAQISFWEVFDEFVKECGNQNNWTA 145
Query: 121 STFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLR 180
ST+EKFAAV+NHL F+E +TFE+F++ GLN+YV +LRD K+MRN+TIGKQ+ FLKWFLR
Sbjct: 146 STYEKFAAVRNHLKEFKEDVTFEYFNDFGLNEYVNFLRDKKDMRNSTIGKQMGFLKWFLR 205
Query: 181 WAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQ 240
W+FKKG HQN AYD++KPKLK+T KK+IFLTWDELN+L++++IP +KQ LERVRDVFLF
Sbjct: 206 WSFKKGHHQNIAYDTFKPKLKTTPKKVIFLTWDELNKLKDYQIPHDKQYLERVRDVFLFC 265
Query: 241 CFTGLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVL 300
CFT LRYSDV NL+RSDIK DHIEVTTVKT+DSLIIELN+HSKAIL+KYKDV FE+ L
Sbjct: 266 CFTSLRYSDVRNLKRSDIKPDHIEVTTVKTADSLIIELNDHSKAILEKYKDVHFENHMAL 325
Query: 301 PVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNAL 360
PVI+NQKMNDYLKEL ELA I+EP+R+TYYKGNERID+VTPKYALL THAGR+TFICNAL
Sbjct: 326 PVISNQKMNDYLKELGELAEINEPVRETYYKGNERIDEVTPKYALLSTHAGRKTFICNAL 385
Query: 361 ALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQL 402
ALGIP VVMKWTGHSDYKAMKPYIDIADDI+ANAM+KFNQL
Sbjct: 386 ALGIPAPVVMKWTGHSDYKAMKPYIDIADDIRANAMNKFNQL 427
>gi|150004298|ref|YP_001299042.1| integrase [Bacteroides vulgatus ATCC 8482]
gi|149932722|gb|ABR39420.1| integrase [Bacteroides vulgatus ATCC 8482]
Length = 451
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 148/406 (36%), Positives = 229/406 (56%), Gaps = 11/406 (2%)
Query: 1 MRVNFASKRIE--FTTGYRIDSAKWDADKQRVKNGCSNKLKQS---ASEINASLLEYYTE 55
+RV + SK+ E F+ GY ID KWD+D+Q VK+ ++K+ A EIN+++ +
Sbjct: 20 IRVRWNSKKNEVGFSVGYTIDPLKWDSDRQLVKSNTTHKISGKTVYAREINSTIRSFIAC 79
Query: 56 IQSIFKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQ 115
I+ +F ++ + +PT +K+ N + EE + KE +F DF+ ++
Sbjct: 80 IEEVFAKYNIHSAIPTTTDLKEQVNEKLGRIKEE-EIVKENKSKTLKDIFSDFLRLRPQE 138
Query: 116 NNWTDSTFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVG-YLRDVKEMRNTTIGKQLSF 174
NW+ + K+ + + LT + + + ++ + + Y+++ N TI KQ
Sbjct: 139 GNWSQNAQYKYEQMWHQLTGYDPKIELDTLNKDKMIQLMNWYIKN--NYCNRTIVKQFKM 196
Query: 175 LKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVR 234
LK FLRW + G +KPKLK K + FL + EL F+ P K+ L + R
Sbjct: 197 LKSFLRWVSRNGYVIQPGVLEFKPKLKVIPKAVTFLKYKELMHFFHFEFPKEKEHLSKAR 256
Query: 235 DVFLFQCFTGLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAF 294
D+F F FT LRYSD+ L+ ++ D +++ T KT D L I LN H+ I++KY +
Sbjct: 257 DMFCFMAFTSLRYSDLAALKPVNLVDGYLDFCTEKTDDKLHIALNEHAMKIIEKYS--WY 314
Query: 295 EDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRT 354
+ D + PV +NQK+NDYLKE A+LAG+D I Q Y+KGN R +D + + H RRT
Sbjct: 315 KGDTIFPVPSNQKLNDYLKEAAKLAGLDREISQVYFKGNTRHEDTYKFWEQISCHDARRT 374
Query: 355 FICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFN 400
F+C +LALGIP VVM TGHSDY++MKPYI++AD+ + M K+N
Sbjct: 375 FVCCSLALGIPASVVMSCTGHSDYESMKPYIEVADETQKMQMEKWN 420
>gi|86130630|ref|ZP_01049230.1| integrase [Cellulophaga sp. MED134]
gi|85819305|gb|EAQ40464.1| integrase [Dokdonia donghaensis MED134]
Length = 414
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 115/389 (29%), Positives = 191/389 (49%), Gaps = 32/389 (8%)
Query: 8 KRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSAS--EINASLLEYYTEIQSIFKRFEV 65
K ++TG RI A WD +R K NK++ + + +L ++ + + ++E+
Sbjct: 29 KSFIYSTGQRIHPADWDLKHKRPKKN-PNKIESGIAFRNLKKTLEDHVNLLDRLSVQYEM 87
Query: 66 EDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTD----- 120
D T + ++AF+ K S + FF+V+D F+E + N+ TD
Sbjct: 88 IDEKLTIDIARQAFDKEFKKSSSKTN--------GFFKVYDIFLEQ--KINDPTDKGNSP 137
Query: 121 STFEKFAAVKNHLTNFREGL----TFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLK 176
ST +++ K L F L F ++ ++ + +VK+ T+ + + LK
Sbjct: 138 STIKRYQYNKKLLQEFESYLGKPIRFSALNQTVYQTFLRFCIEVKKHSANTLSRNVGLLK 197
Query: 177 WFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDV 236
FL WA K N+ + +++ + ++I F +++ + + SN + LE+VRD+
Sbjct: 198 TFLFWAEKNKYTYNDEFKNFENVKRFPTEEIAF-NLNQVKDIYSVDLSSNTR-LEKVRDL 255
Query: 237 FLFQCFTGLRYSDVFNLRRSDIKDDHIEVTTVKT-SDSLIIELNNHSKAILDKYKDVAFE 295
F+ C TG RY + L++SD+ D I VT VK + SL + LN SK+IL+KY
Sbjct: 256 FILGCTTGFRYGNYSKLKKSDVYGDFICVTDVKDPTKSLKVPLNEISKSILEKY------ 309
Query: 296 DDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTF 355
D LP I+NQK N Y+KEL EL G E R++ G + V P Y + +H RRTF
Sbjct: 310 -DFNLPSISNQKFNKYVKELFELLGFVENARKSMKYGKDVHTSVVPLYTRVNSHTARRTF 368
Query: 356 ICNALALGIPPQVVMKWTGHSDYKAMKPY 384
I G+P +++M +TGH + Y
Sbjct: 369 ITIMKNKGVPDKIIMGYTGHKSIQNFNLY 397
>gi|15072716|emb|CAC47923.1| putative integrase [Bacteroides thetaiotaomicron]
Length = 444
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 116/409 (28%), Positives = 189/409 (46%), Gaps = 35/409 (8%)
Query: 7 SKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVE 66
S RI++ T Y+I WD +K+R+K S L E + +L + R +
Sbjct: 55 SCRIKYRTNYKILPKSWDFEKERLKPSASGAL-----EFSWNLKHPCNLLDKEAMRKKET 109
Query: 67 DVMPTPEQIKKAFNAL--HKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTD---- 120
+ P++I L H+ + + L F +FV++ + T
Sbjct: 110 NPSFFPKRIINRCTGLYCHRDNAVNSEISISHLKPRFLSYKSNFVKEGTLKEYRTVFKGL 169
Query: 121 STFEKFAAVKNHLTNFREGL--TFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWF 178
FEK K L FE F R N G D + + N TI K +S LK F
Sbjct: 170 EDFEKHKGTKLILREMDGKFLDQFEVFLSRKKNTNDG---DKEGLLNDTIHKYISTLKVF 226
Query: 179 LRWAFKKGVHQNNAY----DSYKPKLKSTQKK----IIFLTWDELNRLREFKIPSNKQAL 230
L+W +N Y D +K + + +KK II L+ E+ +L + S++ +L
Sbjct: 227 LKWC------NDNDYLVHPDVFKTQKTNFKKKAYNEIIALSESEIQKLMNHDL-SDRPSL 279
Query: 231 ERVRDVFLFQCFTGLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYK 290
E+VRD+F C+TG R+ D+ N DIK++ + +VK +I+ + D +
Sbjct: 280 EKVRDLFCLLCYTGQRFEDLINFDPKDIKNNAWDFISVKVKKRVIVPFEGYIAPAKDILE 339
Query: 291 DVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHA 350
+ + +P I+NQK N+Y+K + +LAG+DE I+ T Y G +++ KY L +H
Sbjct: 340 RIGYS----VPKISNQKFNEYIKTVGKLAGMDEIIKITRYSGKQKLVIEKRKYDFLSSHV 395
Query: 351 GRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
GRR+ + N L+ +P +V K T HSD + + Y D +A++KF
Sbjct: 396 GRRSMVTNLLSRNVPITLVQKLTAHSDIRTLMKYESANTDSLIDALNKF 444
>gi|89891088|ref|ZP_01202596.1| putative integrase [Flavobacteria bacterium BBFL7]
gi|89516732|gb|EAS19391.1| putative integrase [Flavobacteria bacterium BBFL7]
Length = 364
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 100/362 (27%), Positives = 176/362 (48%), Gaps = 29/362 (8%)
Query: 44 EINASLLEYYTEIQSIFKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQ 103
++ + L Y TE I ++E+ D+ T +K + K VS FF
Sbjct: 17 DVQSQLNRYQTEFHKIISQYEILDMDFTIADVKGKLDLAFKKVSSRKT---------FFD 67
Query: 104 VFDDFVEDCGRQNNWTDSTFEKFAAVKNHLTNFREG----LTFEFFDERGLNDYVGYLRD 159
+D+FV++ +W+ +T ++A +K L NF + L+F + +++ Y
Sbjct: 68 FYDEFVKEKKMNRDWSPATITRYANIKTILENFEKSKGYKLSFNSINSTFHSEFTDYCMG 127
Query: 160 VKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRL- 218
+ N T + L +K FL WA K N+ + +K K + +++ L ++L +L
Sbjct: 128 TLKHINNTYARNLGLVKTFLFWALDKNYTYNDEFKKFKKKERVITNQVV-LDKEDLEKLM 186
Query: 219 -REFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLI-- 275
+FK+ S LERVRDVF+F TG+R+ ++ + +++I ++ + K S+ +
Sbjct: 187 KHQFKLKS----LERVRDVFVFSAVTGMRFGELKYVTKTNITNNTFHLKEEKGSEKEMRS 242
Query: 276 IELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNER 335
I L+ + IL+KY D LP+I NQK N+Y+K++ E AG +++ +G E
Sbjct: 243 IPLSKVAIHILEKY-------DYKLPIIANQKHNEYIKDVFEDAGFKHIVQKITTRGKEV 295
Query: 336 IDDVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANA 395
I + Y + +H RRTFI G +++ K TGH D K + Y + D K A
Sbjct: 296 IREDMLFYDRVSSHTARRTFITMMKREGKSDKLISKITGHRDMKTLNSYYQVDSDEKKEA 355
Query: 396 MS 397
++
Sbjct: 356 VN 357
>gi|156110579|gb|EDO12324.1| hypothetical protein BACOVA_01822 [Bacteroides ovatus ATCC 8483]
Length = 439
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 109/407 (26%), Positives = 187/407 (45%), Gaps = 39/407 (9%)
Query: 1 MRVNF-ASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSI 59
+R N+ +KR +TGY I WD+ K+ +K C N EI+A L+ +++ I
Sbjct: 45 VRYNYNRTKRTLISTGYSIKPEHWDSKKRWIKRACPN-----YDEIDACLIRITSKLGEI 99
Query: 60 FKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWT 119
++ + PT + L K E +P + D F + ++ + + +
Sbjct: 100 LTYAKINGISPT---VDFVLLELKKNREYELRPNR----VDIFDALERYITE--KAPVVS 150
Query: 120 DSTFEKFAAVKNHLTNFREG----LTFEFFDERGLNDYVGYL--RDVKE-----MRNTTI 168
+ + ++ HL F+E +TF + N+++ YL + +K + +
Sbjct: 151 ADQIKDYRTLRKHLIAFKEHSSQPITFHNLNLIFYNEFMDYLFYKVIKPDGSVGLLTNSA 210
Query: 169 GKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQ 228
GK + LK F+ + KGV D K+ + I+L+ EL+ + E + +KQ
Sbjct: 211 GKIVRLLKGFVNYQIDKGVIP--PIDLKHFKVVEEETDAIYLSEKELSTIHELDLSDDKQ 268
Query: 229 ALERVRDVFLFQCFTGLRYSDVFNL--RRSDIKDDHIEVTTVKTSDSLIIELNNHSKAIL 286
LE +RDVF+ CFTGLRYSD+ L D+ ++ I + K ++II + ++ IL
Sbjct: 269 -LEEIRDVFITGCFTGLRYSDLSTLSPEHIDLDNEIINLKQRKVHKAVIIPMIDYVPEIL 327
Query: 287 DKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALL 346
KY + LP I N+ +KEL A + + I KG ER V K+ ++
Sbjct: 328 KKY-------NYDLPKIPRYIFNERVKELGRRAKLKQKIEVVRKKGKEREKRVYEKWEMI 380
Query: 347 GTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKA 393
+H RR+F N G P +M+ +GH A YI + D+++A
Sbjct: 381 SSHTCRRSFCTNMYLSGFPAGELMRISGHKSPSAFMRYIKV-DNLQA 426
>gi|53712631|ref|YP_098623.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52215496|dbj|BAD48089.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 409
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 113/412 (27%), Positives = 184/412 (44%), Gaps = 55/412 (13%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ K +F+T I W + K + A INA L + + + +I+
Sbjct: 27 RITIDGKLCQFSTKQSIQPDNWSIAAGKAKG-------RDAGRINALLDDIRSSLHTIYH 79
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDS 121
+ D T E++K F L S E FQ +D V+ + T +
Sbjct: 80 EMQRRDNYVTAEKVKNEF--LGHSESHETI-------LSLFQKHNDDVKQLVGISK-TIA 129
Query: 122 TFEKFAAVKNHLTNFREG------LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
T+ K+ + HL F + ++ + + D+ YLR + T K + F
Sbjct: 130 TYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQFF 189
Query: 176 KWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRD 235
K + A G+ + + SYK +L+ + +LT DE+ + + K+ S + LE VRD
Sbjct: 190 KRIIIIARNNGILVGDPFASYKIRLEKVDRG--YLTEDEIKIILKKKMVSER--LEHVRD 245
Query: 236 VFLFQCFTGLRYSDVFNLRRSDIK---DDHIEVTT--VKTSDSLIIELNNHSKAILDKYK 290
+F+F CF GL YSDV NLR+ +I+ D ++ + T KT+ + + L + K IL KYK
Sbjct: 246 LFVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILKKYK 305
Query: 291 DVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHA 350
D K+LPVI+NQK+N YLKE+A++ GI + L H
Sbjct: 306 G-KLPDGKILPVISNQKLNAYLKEIADICGIKKN---------------------LTFHL 343
Query: 351 GRRTF-ICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
R TF L+ G+P + V K GH++ + + Y I + + M ++
Sbjct: 344 ARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKIGSDMQGLDK 395
>gi|120435029|ref|YP_860715.1| phage integrase family protein [Gramella forsetii KT0803]
gi|117577179|emb|CAL65648.1| phage integrase family protein [Gramella forsetii KT0803]
Length = 412
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 108/403 (26%), Positives = 181/403 (44%), Gaps = 54/403 (13%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
+R+ +R EF+ +I W++ Q A EIN L +I SI
Sbjct: 35 LRITLDGRRCEFSVHRKIKLGWWNSRTQLALGN-----SPEAQEINKYLSVVKNKIYSIQ 89
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTD 120
+ FE E++ + ++ A K K + + + FQ +D VE ++ +
Sbjct: 90 QNFERENIAYSASSLRDALLG---------KDKTQKMLLEIFQEHNDKVESLIGKD-FAT 139
Query: 121 STFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSF 174
T E++ K H+ F + + + D + + YL+ ++ + + K ++
Sbjct: 140 GTAERYRTCKKHVAAFVKQKYNKNDIPVQDVDHKFITGLEYYLKTTRKCAHNSAIKYITN 199
Query: 175 LKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVR 234
K +R A + + +K KLK +++ FLT +E+ ++ + + + L++VR
Sbjct: 200 FKKIIRIAHANDWIDKDPFLHWKGKLKIVERE--FLTEEEIQKIIDLHLKMER--LDQVR 255
Query: 235 DVFLFQCFTGLRYSDVFNLRRSDIK-----DDHIEVTTVKTSDSLIIELNNHSKAILDKY 289
D+F+F CFTGL Y+DV L R DI ++ ++ KT I + +K I++KY
Sbjct: 256 DIFIFCCFTGLAYADVKKLNRGDISVGADGEEWVKTKRSKTDTRSNIPILPIAKTIIEKY 315
Query: 290 KDVAF--EDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
KD E D VLPV++NQKMN Y+KE+A LAGI + L
Sbjct: 316 KDNELLKEKDLVLPVLSNQKMNAYIKEIANLAGISKN---------------------LT 354
Query: 348 THAGRRTFICN-ALALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
H R TF L G+P + V K GH++ K + Y I D
Sbjct: 355 FHLARHTFATTVTLTNGVPIESVSKMLGHTNLKTTQHYAKILD 397
>gi|29348887|ref|NP_812390.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29340793|gb|AAO78584.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 427
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 106/413 (25%), Positives = 185/413 (44%), Gaps = 38/413 (9%)
Query: 1 MRVNF-ASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSI 59
+R N+ +KR +TGY I WDA ++ +K C + EI+A L++ +++ I
Sbjct: 33 VRYNYNRNKRTLISTGYNIKPEHWDAKRKWIKRACPH-----YEEIDACLIKITSKLGDI 87
Query: 60 FKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWT 119
+V + PT + L K + +P + D F + ++ + + + +
Sbjct: 88 LTYAKVNGIDPT---VDFVLLELEKNREYDLRPNR----VDMFDALERYIVE--KAPSVS 138
Query: 120 DSTFEKFAAVKNHLTNFRE----GLTFEFFDERGLNDYVGYLRDVKEMRNTTIG------ 169
+ + ++ HLT F+E +TF + N+++ YL N T+G
Sbjct: 139 ADQIKDYRTLRKHLTAFKEYSSQPVTFRNLNLTFYNEFMDYLFHKVVKPNGTVGLLTNSA 198
Query: 170 -KQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQ 228
K + LK F+ + KG+ D K+ + I+L EL + E + +KQ
Sbjct: 199 GKIIRLLKGFVNYQIVKGIIP--PIDLKNFKVVEEETDAIYLNEKELAAIYELDLSDDKQ 256
Query: 229 ALERVRDVFLFQCFTGLRYSDVFNL--RRSDIKDDHIEVTTVKTSDSLIIELNNHSKAIL 286
LE +RDVF+ CFTGLRYSD+ L D+ +++I + K +++I + ++ IL
Sbjct: 257 -LEEIRDVFITGCFTGLRYSDLSTLSPEHIDLDNENINLKQRKVHKAVVIPMIDYVPEIL 315
Query: 287 DKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALL 346
KY + LP I N+ +KEL + + I KG ER V K+ ++
Sbjct: 316 KKY-------NYDLPKIPRYMFNERVKELGRKIKLSQKIEVVRRKGKEREKRVYEKWEMI 368
Query: 347 GTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
+H RR+F N G P +M+ +GH A YI + + A + +
Sbjct: 369 SSHTCRRSFCTNMYLSGFPAAELMRISGHKSPSAFMRYIKVDNQQAAKRLKEL 421
>gi|29345486|ref|NP_808989.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29337378|gb|AAO75183.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 410
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 114/412 (27%), Positives = 181/412 (43%), Gaps = 55/412 (13%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ K +F+T I W+ + K + K+ +I ASL Y E Q
Sbjct: 27 RITIDGKLCQFSTKQSILPDSWNIAAGKAKGKDAGKINALLDDIKASLNNIYHEQQR--- 83
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDS 121
D T E++K F + K E + F + DD + G T +
Sbjct: 84 ----RDNYVTAEKVKNEFLGHSE--------KHETVLTLFKKHNDDVKQLVGISK--TIA 129
Query: 122 TFEKFAAVKNHLTNFREG------LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
T+ K+ + HL F + + D+ YLR + T K + F
Sbjct: 130 TYRKYEVTRRHLAEFIQSKYNVSDFAINEITPMFITDFELYLRTTCKCGYNTTAKFMQFF 189
Query: 176 KWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRD 235
K + A G+ + + SYK +L+ + +L+ DE+ + + K+ S + LE VRD
Sbjct: 190 KRIILIARNNGILIGDPFASYKIRLEKVDRG--YLSEDEIKIILKKKMVSER--LENVRD 245
Query: 236 VFLFQCFTGLRYSDVFNLRRSDIK---DDHIEVTT--VKTSDSLIIELNNHSKAILDKYK 290
+F+F CFTGL Y DV NL + +I+ D ++ + T KT+ + + L + K IL KYK
Sbjct: 246 LFIFSCFTGLAYIDVANLTQDNIRKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILKKYK 305
Query: 291 DVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHA 350
D K+LPVI+NQK+N YLKE+A++ GI + L H
Sbjct: 306 G-NLPDGKILPVISNQKLNAYLKEIADVCGIKKN---------------------LTFHL 343
Query: 351 GRRTF-ICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
R TF LA G+P + V K GH++ + + Y I ++ +N M ++
Sbjct: 344 ARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNNKISNDMQGLDK 395
>gi|150005005|ref|YP_001299749.1| putative transposase [Bacteroides vulgatus ATCC 8482]
gi|149933429|gb|ABR40127.1| putative transposase [Bacteroides vulgatus ATCC 8482]
Length = 412
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 110/415 (26%), Positives = 188/415 (45%), Gaps = 57/415 (13%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWD--ADKQRVKNGCSNKLKQSASEINASLLEYYTEIQS 58
+R+ F + + WD A K ++ + ++ + +INASL Y E+Q
Sbjct: 26 VRITIDGVASRFNSKLDVQPKLWDGKAGKAAGRSAEATRINRLLDDINASLNTIYHELQR 85
Query: 59 IFKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNW 118
D T E++K F + + FQ +D V+ +
Sbjct: 86 -------RDNYVTAEKVKNEFLG---------HSENHDTILNLFQKHNDDVKQLVGISK- 128
Query: 119 TDSTFEKFAAVKNHLTNFREG------LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQL 172
T +T+ K+ + HL F + ++ + + D+ YLR + T K +
Sbjct: 129 TIATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKCGYNTTAKFM 188
Query: 173 SFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALER 232
F K + A G+ + + +YK +L+ + +LT DE+ + + K+ S + LE+
Sbjct: 189 QFFKRIILIARNNGILIGDPFANYKIRLEKVDRG--YLTEDEIKIILKKKMVSER--LEQ 244
Query: 233 VRDVFLFQCFTGLRYSDVFNLRRSDIK---DDHIEVTT--VKTSDSLIIELNNHSKAILD 287
VRDVF+F CF+GL Y DV NL+ +I+ D ++ + T KT+ + + L + K IL+
Sbjct: 245 VRDVFIFSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILE 304
Query: 288 KYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
KYK + KVLP+I+NQK+N YLKE+A++ GI + L
Sbjct: 305 KYKG-KLPNGKVLPIISNQKLNAYLKEIADVCGIKKN---------------------LT 342
Query: 348 THAGRRTF-ICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
H R TF LA G+P + V K GH++ + + Y I ++ +N M ++
Sbjct: 343 FHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKISNDMQGLDK 397
>gi|60680742|ref|YP_210886.1| putative transposase [Bacteroides fragilis NCTC 9343]
gi|60492176|emb|CAH06939.1| putative transposase [Bacteroides fragilis NCTC 9343]
Length = 412
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 110/415 (26%), Positives = 188/415 (45%), Gaps = 57/415 (13%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWD--ADKQRVKNGCSNKLKQSASEINASLLEYYTEIQS 58
+R+ F + + WD A K ++ + ++ + +INASL Y E+Q
Sbjct: 26 VRITIDGVASRFNSKLDVQPKLWDGKAGKAAGRSAEAIRINRMLDDINASLNTIYHEMQR 85
Query: 59 IFKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNW 118
D T E++K F + + FQ +D V+ +
Sbjct: 86 -------RDNYVTAEKVKNEFLG---------HSENHDTILNLFQKHNDDVKQLVGISK- 128
Query: 119 TDSTFEKFAAVKNHLTNFREG------LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQL 172
T +T+ K+ + HL F + ++ + + D+ YLR + T K +
Sbjct: 129 TIATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKCGFNTTAKFM 188
Query: 173 SFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALER 232
F K + A G+ + + +YK +L+ + +LT DE+ + + K+ S + LE+
Sbjct: 189 QFFKRIILIARNNGILIGDPFANYKIRLEKVDRG--YLTEDEIKIILKKKMVSER--LEQ 244
Query: 233 VRDVFLFQCFTGLRYSDVFNLRRSDIK---DDHIEVTT--VKTSDSLIIELNNHSKAILD 287
VRDVF+F CF+GL Y DV NL+ +I+ D ++ + T KT+ + + L + K IL+
Sbjct: 245 VRDVFIFSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNIDVNVPLLDIPKMILE 304
Query: 288 KYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
KYK + KVLP+I+NQK+N YLKE+A++ GI + L
Sbjct: 305 KYKG-KLPNGKVLPIISNQKLNAYLKEIADVCGIKKN---------------------LT 342
Query: 348 THAGRRTF-ICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
H R TF LA G+P + V K GH++ + + Y I ++ +N M ++
Sbjct: 343 FHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKISNDMQGLDK 397
>gi|34541110|ref|NP_905589.1| integrase [Porphyromonas gingivalis W83]
gi|34397426|gb|AAQ66488.1| integrase [Porphyromonas gingivalis W83]
Length = 408
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 97/340 (28%), Positives = 163/340 (47%), Gaps = 39/340 (11%)
Query: 1 MRVNFASKRIEF-TTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSI 59
+R+ +R+ +TG +++ WD++K++VK + L E+N + E +I +I
Sbjct: 26 IRIYLNKERLSLGSTGLSVNAQLWDSEKEKVKGHSAEAL-----EVNRKIEEIRADILTI 80
Query: 60 FKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQN--N 117
+KR EV TPE+IK + ++ ++FD ED Q N
Sbjct: 81 YKRLEVTVDDLTPERIKSEYCGQTDTLNS------------IVELFDKHNEDVRAQVGIN 128
Query: 118 WTDSTFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQ 171
T +T +K+ K H T F R L F ++++ YL V T K
Sbjct: 129 KTAATLQKYENSKRHFTRFLKAKYNRTDLKFSELTPLVIHNFEIYLLTVAHCCPNTATKI 188
Query: 172 LSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQA 229
L K + + G ++ + + + + + + FLT +E+ R+ +E IP
Sbjct: 189 LKLFKTITLYGRRHGFLSHDPFVNKRFHTQDSSRG--FLTDEEIQRIIGKEISIPR---- 242
Query: 230 LERVRDVFLFQCFTGLRYSDVFNLRRSDIKD----DHIEVTTVKTSDSLIIELNNHSKAI 285
L+ VRD+F+F CF+GL Y DV NL +I + + I KT + I L + K I
Sbjct: 243 LDLVRDIFIFSCFSGLAYIDVSNLTEDNIVELDGREWIMTRRQKTRVATNIILLDIPKRI 302
Query: 286 LDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPI 325
++KY V ++ +LP+++NQKMN YLKE+A+L I +P+
Sbjct: 303 IEKYAPVR-KNGHLLPILSNQKMNAYLKEIADLCNIRKPL 341
>gi|156862827|gb|EDO56258.1| hypothetical protein BACUNI_00096 [Bacteroides uniformis ATCC 8492]
Length = 406
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 104/415 (25%), Positives = 183/415 (44%), Gaps = 57/415 (13%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
+R+ +++EF+T I+ KWD +K+ + +A+EIN L + E + +
Sbjct: 26 VRITIDGEKVEFSTKLEIEEKKWD-----IKSAKAAGRTPAANEINLKLDKMRVEFNNHY 80
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQ--NNW 118
++ PTP +K A+ + +A + VF V++ G+Q +
Sbjct: 81 EKIRSVGSFPTPLMLKNAYLGI------------KAKSHTMLTVFKKIVDEKGKQLGVSI 128
Query: 119 TDSTFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQL 172
+ ST+ K+ V L + L D+ +N + +LR K++ + K +
Sbjct: 129 SKSTYSKYELVYRRLQEYIKQEYKNTDLPLYSIDDDFVNGFEIFLRVDKKVGHNATAKMM 188
Query: 173 SFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALER 232
LK +A G+ Q + + Y K+ + +LT +EL + E I + + L R
Sbjct: 189 QKLKTSTTYAKSHGMMQEDPF--YDKKITFEDVDVPYLTMEELQAVMEKDIQNAR--LRR 244
Query: 233 VRDVFLFQCFTGLRYSDVFNLRRSDI---KDDHIEVTTVKTSDSLI--IELNNHSKAILD 287
VRD+F+F CFTGL YSD + L + D + + + +I I L ILD
Sbjct: 245 VRDIFVFSCFTGLAYSDTYYLTEEHLYKANDGKMWIKKPRQKTKVIADIPLLEVPLQILD 304
Query: 288 KYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
KY+ ++LPV +NQK+N YLKELA + GI++ + TY
Sbjct: 305 KYRGQQ-TGGRLLPVCSNQKVNQYLKELATVCGINKEL--TY------------------ 343
Query: 348 THAGRRTFICNALAL-GIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
H R TF + L +P + K GH++ + + Y + + + +M ++
Sbjct: 344 -HVARYTFATSLTLLHDVPMASIAKMLGHTNIRQTQHYAKATNILLSRSMQNLSE 397
>gi|88805941|ref|ZP_01121459.1| tyrosine type site-specific recombinase [Robiginitalea biformata
HTCC2501]
gi|88783550|gb|EAR14721.1| tyrosine type site-specific recombinase [Robiginitalea biformata
HTCC2501]
Length = 423
Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 111/422 (26%), Positives = 183/422 (43%), Gaps = 66/422 (15%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
MR+ KR E +T +ID KWDA R++ Q ASE+N L +I I
Sbjct: 26 MRITVDGKRSEMSTARKIDPEKWDAKAGRMRGN-----TQEASELNHYLDMIRAKINKIH 80
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQ----- 115
+F + T QIK+ + L K F++ + E+ RQ
Sbjct: 81 YQFIESEKPFTARQIKERY--LQKDQR--------------FKMLMEVFEEHNRQMKSLV 124
Query: 116 -NNWTDSTFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTI 168
+ T++++ H F R+ + D R +N + +L+ KE + +
Sbjct: 125 GKEYALGTWKRYNTTFKHTREFLKTEYRRDDIPMMEVDLRFINRFDYFLKFTKECNHNSS 184
Query: 169 GKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQ 228
K ++ K +R Q + + ++K K K ++ +LT +EL RL +++ +
Sbjct: 185 LKYINNFKKIIRMGVANDWIQKDPFYNFKAKFKWVDRE--YLTREELERLINYEVTVPRM 242
Query: 229 ALERVRDVFLFQCFTGLRYSDVFNLRRSDIKDD-----HIEVTTVKTSDSLIIELNNHSK 283
+ V+D+F+F CFTGL Y DV L ++I I+ KT L I L +
Sbjct: 243 GI--VKDMFVFCCFTGLAYIDVKKLTPNNIVKHIDGSLWIQSARQKTRSKLGIPLLPTAL 300
Query: 284 AILDKYKD--VAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTP 341
I++KY+D D V+PV++NQ+ N YLKE+A++ GI +
Sbjct: 301 EIIEKYEDHPKVVNGDCVIPVLSNQRSNAYLKEIADICGITKH----------------- 343
Query: 342 KYALLGTHAGRRTFICN-ALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFN 400
L TH R TF L+ G+P + V K GH + +A + Y I + A+ M+
Sbjct: 344 ----LTTHLARHTFATTVTLSNGVPIETVGKLLGHRNLRATQHYAKIVNKKVADDMAALK 399
Query: 401 QL 402
+
Sbjct: 400 NV 401
>gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29342059|gb|AAO79844.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 407
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 111/416 (26%), Positives = 176/416 (42%), Gaps = 62/416 (14%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
MR+ R++ + I W A K G + + K+ E+N L I I
Sbjct: 27 MRITVNGVRVDASVKKTILPEFWSAAK-----GKALEKKREYKELNLYLDSIRLRIMKIQ 81
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTD 120
+ E+E+V + + F PV F+VF + + C Q + TD
Sbjct: 82 RELEIEEVSVSANSVLDRFLGKDAPVQRT-----------LFEVFREHNDKC-VQLSGTD 129
Query: 121 ---STFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQ 171
+T +++ H +F ++ + + + + DY +L+ K+ + T K
Sbjct: 130 MAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKKCCHNTATKY 189
Query: 172 LSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQA 229
L K +R A KG +N+ + + L + FL E+ +L +E IP
Sbjct: 190 LKNFKKIIRIALAKGWMKNDPFLEIRFSLDKVEPD--FLEDSEIQKLISKEIDIPR---- 243
Query: 230 LERVRDVFLFQCFTGLRYSDVFNLRRSDIKDDHIEVTTV-----KTSDSLIIELNNHSKA 284
L +VRD+F+F CFTGL +SD+ LR+ I +D V + KT I L
Sbjct: 244 LSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLK 303
Query: 285 ILDKYKDVAF--EDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPK 342
IL+KY + + + PV+ NQKMN YLKELA++ GI +
Sbjct: 304 ILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKT------------------ 345
Query: 343 YALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSK 398
L TH GR TF ALA G+ + V K GH++ + + Y + D MS+
Sbjct: 346 ---LTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQ 398
>gi|146302080|ref|YP_001196671.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
gi|146156498|gb|ABQ07352.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
Length = 435
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 118/414 (28%), Positives = 177/414 (42%), Gaps = 54/414 (13%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ R E +T R D+ +WD QR + +K + A +N L +I I
Sbjct: 27 RITVDGIRKESSTKRRWDNTRWD---QRFERAVGSK--EDAKSLNFFLDSLTLKINEIKT 81
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDS 121
T E+I V + PK + L + FQ +D +E +
Sbjct: 82 EMMYSGKTITAEKIMDG-------VLGKTAPKIKVL--EEFQKHNDEMEAL-LGKGYAKG 131
Query: 122 TFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
T ++F KNHLT F + L F + + D+ YLR V++ N T K ++
Sbjct: 132 TLDRFTITKNHLTAFIKFKLKKHDLEFADLNLEFVKDFEFYLRTVRDCSNNTTLKYIANF 191
Query: 176 KWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRD 235
K + A K + + + ++K + KK LT EL L +++ L VRD
Sbjct: 192 KKIVIRAIDKELITKDPFKNFKGRKTKLVKKP--LTAQELYELESHYFTTDR--LNVVRD 247
Query: 236 VFLFQCFTGLRYSDVFNLRRSDIKDD-----HIEVTTVKTSDSLIIELNNHSKAILDKYK 290
VF+FQC+TGL Y D + L+++DIK+ I KT+ S + L + I++KYK
Sbjct: 248 VFVFQCYTGLAYIDAYQLKKTDIKEGIDGNLWIMSERQKTNSSFNVPLLPQALKIVEKYK 307
Query: 291 D--VAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGT 348
+ + + VLPV +NQKMN+YLKE+A L G P L T
Sbjct: 308 EHPLCIQRGTVLPVSSNQKMNEYLKEVAVLCGF--PFT-------------------LNT 346
Query: 349 HAGRRTFICN-ALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
H RRTF L +P VV + GH+ K + Y MS N+
Sbjct: 347 HMARRTFGSTVTLNNNVPINVVKELLGHASVKQTEAYAITEQATIGREMSILNK 400
>gi|150004634|ref|YP_001299378.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|149933058|gb|ABR39756.1| transposase [Bacteroides vulgatus ATCC 8482]
Length = 407
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 111/416 (26%), Positives = 173/416 (41%), Gaps = 62/416 (14%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
MR+ R++ + I W A K G + + K+ E+N L I I
Sbjct: 27 MRITVNGVRVDASVKKTIFPEFWSAAK-----GKALEKKREYKELNLYLDSIRLRIMKIQ 81
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTD 120
+ E+E V + + + F PV F+VF + + C Q + TD
Sbjct: 82 RELEIEGVSVSANSVLERFLGKDAPVQRT-----------LFEVFREHNDKCA-QLSGTD 129
Query: 121 ---STFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQ 171
+T +++ H +F ++ + + + DY +L+ K+ + T K
Sbjct: 130 MAPATVQRYETSLKHTQDFVWETYHKKDILLGDVSRQFIEDYEFWLKTEKKCCHNTATKY 189
Query: 172 LSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQA 229
L K +R A KG +N+ + K L + FL E+ +L +E IP
Sbjct: 190 LKNFKKIIRIALAKGWMKNDPFSEIKFSLDKVEPD--FLEDSEIQKLISKEIDIPR---- 243
Query: 230 LERVRDVFLFQCFTGLRYSDVFNLRRSDIKDDH-----IEVTTVKTSDSLIIELNNHSKA 284
L +VRDVF+F CFTGL +SD+ +L++ I +D I KT I L
Sbjct: 244 LGQVRDVFVFCCFTGLAFSDIHDLKKEHIVEDSNGAKWIRKGRQKTKIMCNIPLMEVPLK 303
Query: 285 ILDKYKDVAFEDDK--VLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPK 342
IL KY + + + PV+ NQKMN YLKELA++ GI +
Sbjct: 304 ILGKYSTNEYCKSRGVLFPVLCNQKMNAYLKELADICGIKKT------------------ 345
Query: 343 YALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSK 398
L TH R TF ALA G+ + V K GH++ + + Y + D MS+
Sbjct: 346 ---LTTHVARHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQ 398
>gi|88804063|ref|ZP_01119583.1| integrase [Robiginitalea biformata HTCC2501]
gi|88784942|gb|EAR16111.1| integrase [Robiginitalea biformata HTCC2501]
Length = 239
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 15/230 (6%)
Query: 163 MRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKI--IFLTWDELNRLRE 220
M+N TIGK + LK FL V +N K Q+++ I+LT DE+ + +
Sbjct: 8 MKNNTIGKLVKNLKAFL----NDRVRRNRIKPIDLSSFKVVQEEVDHIYLTDDEIQAIAD 63
Query: 221 FKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKDD-HIEVTTVKTSDSLIIELN 279
+K+ LE+V+D F+ C TGLR+SD+ +R + + + + KTS +++ L
Sbjct: 64 VDCKEDKE-LEKVKDFFVIGCLTGLRFSDISRIRPEYLDSEGFLNIRQKKTSGRIVVPLR 122
Query: 280 NHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDV 339
KAILDKY A P I + N +KEL + A + + + + +G + +
Sbjct: 123 KQVKAILDKYSGYA-------PDIDSFTFNRRIKELGDSAKLHQKVEIEHKRGTIKEAQL 175
Query: 340 TPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
KY L+ +H RR+F NA GI Q++MK +GH KA + Y+ I++
Sbjct: 176 LEKYKLISSHTCRRSFCTNAYLNGIDVQLIMKISGHKSEKAFRRYLKISN 225
>gi|29347687|ref|NP_811190.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339588|gb|AAO77384.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 419
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 107/420 (25%), Positives = 181/420 (43%), Gaps = 59/420 (14%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRV---KNGCSNKLKQSASEINASLLEYYTEIQ 57
+R+ +++F++ I WD R K K S +N +L E + I
Sbjct: 26 VRITVDGDQVQFSSKLDIHPDNWDTKTGRAVINKQSADKKENLRVSSLNKTLDEIRSAIT 85
Query: 58 SIFKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNN 117
+ R D PE+I+ AF L + K++ L F Q + + + G+
Sbjct: 86 MHYTRMMNVDGYALPEKIRNAFLGLEE--------KEKTLISYFTQHNEQYAKKVGKTA- 136
Query: 118 WTDSTFEKFAAVKNHLTNFRE------GLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQ 171
T T+ ++ K + F + + + + ++ YLR E+ N T K
Sbjct: 137 -TQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEITVTHIENFYLYLRQECEVSNNTAMKF 195
Query: 172 LSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQA 229
+ L +A K G+ + + +++ T + +LT +E++ + +EFK +
Sbjct: 196 VQRFHTILLFAQKSGLSFIDPFGNFRFNFDKTDRG--YLTQEEIDTIYYKEFK----SKR 249
Query: 230 LERVRDVFLFQCFTGLRYSDVFNLRRSDIK-----DDHIEVTTVKTSDSLIIELNNHSKA 284
LE VRD F+F C+TGL Y D++ L DIK I KT I L
Sbjct: 250 LEHVRDAFIFSCYTGLPYCDIYTLSSEDIKIGVDGKKWIMKDRGKTGVESFIPLLQIPLD 309
Query: 285 ILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYA 344
IL KY+ +D ++LPVI+NQKMN+YL E+A + I++ R TY
Sbjct: 310 ILAKYEG-KLKDGRLLPVISNQKMNEYLAEIAAICQINK--RITY--------------- 351
Query: 345 LLGTHAGRRTF---ICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
H R +F IC L G+P + V K GH++ + + Y + D ++ M+ ++
Sbjct: 352 ----HLARHSFATEIC--LTKGVPIESVSKMLGHTNIQTTQIYARVVDRKLSHDMNMLDR 405
>gi|29347986|ref|NP_811489.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339888|gb|AAO77683.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 411
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 107/391 (27%), Positives = 167/391 (42%), Gaps = 78/391 (19%)
Query: 23 WDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMPTPEQI-KKAFN- 80
W+A K GCS ++++E+N+ L E T +K +E + TP I K+ F
Sbjct: 49 WNAAK-----GCSKGKDRASNELNSYLSELATRALEKYKELILEQAISTPSLILKRVFGK 103
Query: 81 -----ALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVKNHLTN 135
L + +E K ++ + D+ V T ++ V L N
Sbjct: 104 DTEMRTLLGTIRQEIKEMEKVVNIDYAPV-----------------TINRYKNVLKKLEN 146
Query: 136 F------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQ 189
+E +TF + + +L+ + TI + + K A KG +
Sbjct: 147 SIPTFYDKEDITFHELTPEFIKAFDLHLKTEVGLCRNTIVRYMKCFKKITNMALAKGWMK 206
Query: 190 NNAYDSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQALERVRDVFLFQCFTGLRY 247
+A+ YK ++ + +FLT+DEL + +EF IP L VRD+F+F CFTGL +
Sbjct: 207 KDAFYGYK--MEQDETDPVFLTYDELQTVMNKEFTIPR----LVLVRDIFIFACFTGLAF 260
Query: 248 SDVFNLRRSDIKDDH----------IEVTTVKTSDSLI-IELNNHSKAILDKYKD--VAF 294
+DV L++ D+ D+ I++ + S+ I L AIL KY++ V
Sbjct: 261 ADVSTLKKEDLVQDNNGDWWIRKGRIKLMHRHKASSICNIPLLPVPLAILKKYENNPVCI 320
Query: 295 EDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRT 354
+ LPV NQKMN YLKE+A+ GI + I THAGR T
Sbjct: 321 KKGCCLPVPCNQKMNSYLKEIADFCGIKKNIT---------------------THAGRHT 359
Query: 355 FICN-ALALGIPPQVVMKWTGHSDYKAMKPY 384
F LA +P Q V GH+ + + Y
Sbjct: 360 FGTTITLANNVPLQDVSVMLGHASTRMTQHY 390
>gi|86130576|ref|ZP_01049176.1| putative transposase [Cellulophaga sp. MED134]
gi|85819251|gb|EAQ40410.1| putative transposase [Dokdonia donghaensis MED134]
Length = 417
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 98/415 (23%), Positives = 174/415 (41%), Gaps = 64/415 (15%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ KR + R+ WD K R K + A ++N + + YT++ I++
Sbjct: 28 RITVNQKRANISLKRRVPVKLWDPKKNRSKGTSA-----EARQLNQYIDQTYTKLFQIYQ 82
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDS 121
+ ++ + T + IK + +E+ K + + Y ++ +N
Sbjct: 83 DLKFQEKLITAKLIKAHYTG----ENEQSKSLQNLIAYHSKKI----------ENTLAKG 128
Query: 122 TFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDV------KEMRNTTIG 169
T F +N+L F + + D + L D+ YL + K + TI
Sbjct: 129 TIRNFGVTENYLNKFLNKVKKTTDIYLKELDYKFLCDFENYLANYWPVGHPKALSQNTIM 188
Query: 170 KQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQA 229
K + L+ + A+ + + +KP + Q++ FL+ +EL + F+ +
Sbjct: 189 KHIQRLRKMVTLAYHMEWIPRDPFVRWKPVYEKKQRE--FLSENELLNMETFEFSIER-- 244
Query: 230 LERVRDVFLFQCFTGLRYSDVFNLRRSDI-----KDDHIEVTTVKTSDSLIIELNNHSKA 284
LERVRD+F+F C+TG+ Y D+ NL ++ + I KT ++ + L ++
Sbjct: 245 LERVRDLFVFSCYTGISYVDIMNLTEENLVLGMDGGNWIYTKRQKTKSAVKVPLLGKAEE 304
Query: 285 ILDKYKDVAFED--DKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPK 342
I+ KY+ + +LPVITN+K+N YLKE+A GI +
Sbjct: 305 IISKYERHPMTEITGTLLPVITNEKLNVYLKEVAHFVGIKKN------------------ 346
Query: 343 YALLGTHAGRRTFICN-ALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAM 396
L H R TF L+ G+P + V K GHS + Y + + +N M
Sbjct: 347 ---LTFHMARHTFATTITLSNGVPIETVSKLLGHSKIATTQIYARVLEHKVSNDM 398
>gi|156109291|gb|EDO11036.1| hypothetical protein BACOVA_02932 [Bacteroides ovatus ATCC 8483]
Length = 411
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 105/391 (26%), Positives = 165/391 (42%), Gaps = 78/391 (19%)
Query: 23 WDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMPTPEQI-KKAFN- 80
W+A K GCS ++++E+N+ L E T +K +E + TP I K+ F
Sbjct: 49 WNAAK-----GCSKGKDRASNELNSYLSELATRALEKYKELILEQAISTPSLILKRVFGK 103
Query: 81 -----ALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVKNHLTN 135
L + +E K ++ + D+ V T ++ V L N
Sbjct: 104 DTEMRTLLGAIRQEIKEMEKVVNIDYAPV-----------------TINRYKNVLKKLEN 146
Query: 136 F------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQ 189
+E +TF + + +L+ + TI + + K A KG +
Sbjct: 147 SIPTFYDKEDITFHELTPEFIKAFDLHLKTEVGLCRNTIVRYMKCFKKITNMALAKGWMK 206
Query: 190 NNAYDSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQALERVRDVFLFQCFTGLRY 247
+A+ YK ++ + +FLT+DEL + +EF IP L VRD+F+F CFTGL +
Sbjct: 207 KDAFYGYK--MEQDETAPVFLTYDELQTVMNKEFTIPR----LALVRDIFIFACFTGLAF 260
Query: 248 SDVFNLRRSDIKDDH----------IEVTTVKTSDSLI-IELNNHSKAILDKYKD--VAF 294
DV L++ D+ D+ I++ + + S+ I L AIL KY++ V
Sbjct: 261 VDVSTLKKEDMVQDNNGDWWIRKGRIKLMHRRKASSICNIPLLPVPLAILKKYENNPVCI 320
Query: 295 EDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRT 354
+ LPV NQKMN YLKE+A+ GI + I TH R T
Sbjct: 321 KKGYCLPVPCNQKMNSYLKEIADFCGIKKNIT---------------------THVARHT 359
Query: 355 FICN-ALALGIPPQVVMKWTGHSDYKAMKPY 384
F LA +P Q V GH+ + + Y
Sbjct: 360 FGTTITLANNVPLQDVSVMLGHASTRMTQHY 390
>gi|86143473|ref|ZP_01061858.1| tyrosine type site-specific recombinase [Flavobacterium sp. MED217]
gi|85829920|gb|EAQ48381.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
blandensis MED217]
Length = 414
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 101/405 (24%), Positives = 176/405 (43%), Gaps = 58/405 (14%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
+R+ KR E + R+D KW++ +++ + A EIN + ++ I
Sbjct: 26 LRLTVDGKRKEHSISRRVDPRKWNSRQEKAMGN-----SREAVEINTHISNLRHKLNQIH 80
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGR--QNNW 118
+ F D T N+L K + E + K AL +VF + E + +
Sbjct: 81 QTFIEHDKHIT-------VNSLLKELKGENQQNKLAL-----EVFKEHNEKIDQLIGKDI 128
Query: 119 TDSTFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQL 172
+ S+ +++ NH+ F E D + + +L+ + + + K +
Sbjct: 129 SASSAQRYWTCHNHVQQFINEEYDEEDYRLRDIDHNFIIKFEHFLKTKRNCNHNSALKYV 188
Query: 173 SFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALER 232
+ K +R A ++ + +YK K + +++ FLT +E++ L E ++ + L
Sbjct: 189 NNFKKIVRIALANKWISHDPFINYKVKFEPVERE--FLTQEEIDALWEKELHFERLIL-- 244
Query: 233 VRDVFLFQCFTGLRYSDVFNLRRSDIK-----DDHIEVTTVKTSDSLIIELNNHSKAILD 287
VRD+F+F C+TGL YSDV L +SDI I + KT I L ++ IL
Sbjct: 245 VRDMFVFSCYTGLAYSDVEKLSKSDITIGIDGSKWIRIHRTKTGSRSSIPLLPVAEQILA 304
Query: 288 KYKD--VAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYAL 345
+Y++ E ++V+PV++NQK N +LKE+A + I +P
Sbjct: 305 RYENHPQVEESERVIPVLSNQKSNAFLKEIAIMCDISKP--------------------- 343
Query: 346 LGTHAGRRTFICN-ALALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
L TH R TF L G+P + V + GH + + Y I D
Sbjct: 344 LTTHLARHTFATTVTLTNGVPIETVSRMLGHQSLRTTQHYAKIVD 388
>gi|53711947|ref|YP_097939.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52214812|dbj|BAD47405.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 406
Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 99/367 (26%), Positives = 166/367 (45%), Gaps = 43/367 (11%)
Query: 44 EINASLLEYYTEIQSIFKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQ 103
E+N L + + I++ E + T + ++K F + + + KE +
Sbjct: 65 ELNHYLEITRSHVHQIYRELETSGKVITVDLVRKLFYGVDEDNKTLLQVFKEHNEHSRKL 124
Query: 104 VFDDFVEDCGRQNNWTDSTFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEM 163
+ DFV ++ T E+F + L++ + + ++ + +L+ K
Sbjct: 125 IGKDFVSKTVQRYETTTRYLEEFIKKEYQLSD----IALNNLEANFISKFDAFLKIEKGC 180
Query: 164 RNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRL--REF 221
+ +L LK +R A + + + + Y+ KL+ T + FLT DE+ + +EF
Sbjct: 181 AQNSAITRLKNLKKIIRIALENDWIKKDPFAYYRFKLEETDPE--FLTMDEIKIILAKEF 238
Query: 222 KIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSD-IKDDHIEVTTVKTSDSLIIELN- 279
I + +E+VRDVF+F FTGL +SDV +L +KD+ E+ K I N
Sbjct: 239 TI----KRVEQVRDVFIFCVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNI 294
Query: 280 ---NHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERI 336
+ +IL+KYK+VA K+LPV++NQ+MN YLKE+A++ GI +
Sbjct: 295 PVLPVAVSILEKYKNVAECTGKLLPVLSNQRMNSYLKEIADVCGIHKN------------ 342
Query: 337 DDVTPKYALLGTHAGRRTF---ICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKA 393
L TH R ++ IC LA G+ + V K GH+D K Y + D
Sbjct: 343 ---------LSTHTARHSYATSIC--LANGVSMENVAKMLGHADTSITKHYARVLDQNIF 391
Query: 394 NAMSKFN 400
M K N
Sbjct: 392 KDMQKVN 398
>gi|124004236|ref|ZP_01689082.1| transposase, putative [Microscilla marina ATCC 23134]
gi|123990306|gb|EAY29805.1| transposase, putative [Microscilla marina ATCC 23134]
Length = 420
Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 201 KSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKD 260
K + K + LT DEL ++ E + S+K+ +ERVRD F+FQCFTG +SD+ +L+ + +
Sbjct: 232 KDERPKRVILTLDELKQIMEVDL-SDKRGMERVRDCFVFQCFTGFAFSDIVDLKPEHLIE 290
Query: 261 DH----IEVTTVKTSDSLIIELNNHSKAILDKYKD--VAFEDDKVLPVITNQKMNDYLKE 314
I VK+S + L ++ ILDKYKD V ++PVIT+ N YLK
Sbjct: 291 QGERTWIIKERVKSSTIAKMPLLPQARFILDKYKDDPVCLSKGVLIPVITSGNYNTYLKM 350
Query: 315 LAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTG 374
+AE GID+ L +H GRRTF G + + TG
Sbjct: 351 IAEYVGIDKH---------------------LTSHVGRRTFATLVYNAGTDRSKLKEMTG 389
Query: 375 HSDYKAMKPYIDIADDIKANAMSKFNQL 402
H++ + Y +A++ A M KF L
Sbjct: 390 HTNEAITEIYASLANETIAKEMDKFEGL 417
>gi|124004365|ref|ZP_01689211.1| transposase, putative [Microscilla marina ATCC 23134]
gi|123990435|gb|EAY29934.1| transposase, putative [Microscilla marina ATCC 23134]
Length = 420
Score = 94.7 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 201 KSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKD 260
K + K + LT DEL ++ E + S+K+ +ERVRD F+FQCFTG +SD+ +L+ + +
Sbjct: 232 KDERPKRVILTLDELKQIMEVDL-SDKRGMERVRDCFVFQCFTGFAFSDIVDLKPEHLIE 290
Query: 261 DH----IEVTTVKTSDSLIIELNNHSKAILDKYKD--VAFEDDKVLPVITNQKMNDYLKE 314
I VK+S + L ++ ILDKYKD V ++PVIT+ N YLK
Sbjct: 291 QGERTWIIKERVKSSTIAKMPLLPQARFILDKYKDDPVCLSKGVLIPVITSGNYNTYLKM 350
Query: 315 LAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTG 374
+AE GID+ L +H GRRTF G + + TG
Sbjct: 351 IAEYVGIDKH---------------------LTSHVGRRTFATLVYNAGTDRSKLKEMTG 389
Query: 375 HSDYKAMKPYIDIADDIKANAMSKFNQL 402
H++ + Y +A++ A M KF L
Sbjct: 390 HTNEAITEIYASLANETIAKEMDKFEGL 417
>gi|124008731|ref|ZP_01693421.1| transposase, putative [Microscilla marina ATCC 23134]
gi|123985807|gb|EAY25680.1| transposase, putative [Microscilla marina ATCC 23134]
Length = 428
Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 201 KSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKD 260
K + K + LT DEL ++ E + S+K+ ++R+RD F+FQCFTGL +SD+ +L+ + +
Sbjct: 240 KDERPKRVILTLDELKQIMEVDL-SDKRGMDRIRDCFVFQCFTGLAFSDIVDLKPEHLIE 298
Query: 261 DH----IEVTTVKTSDSLIIELNNHSKAILDKYKD--VAFEDDKVLPVITNQKMNDYLKE 314
I VK+S + L +K +LDKYKD V ++PVIT+ N YL+
Sbjct: 299 QGERTWIIKERVKSSTVAKMPLLPQAKFVLDKYKDDPVCLSKGVLIPVITSGNYNTYLRM 358
Query: 315 LAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTG 374
+AE GID+ L +H GRRTF G + + TG
Sbjct: 359 IAECVGIDKH---------------------LTSHVGRRTFATLVYNAGTDRSKLKEMTG 397
Query: 375 HSDYKAMKPYIDIADDIKANAMSKFNQL 402
H++ + Y +A++ A M KF L
Sbjct: 398 HTNEAITEIYASLANETIAKEMDKFEGL 425
>gi|124005636|ref|ZP_01690475.1| transposase, putative [Microscilla marina ATCC 23134]
gi|123988704|gb|EAY28310.1| transposase, putative [Microscilla marina ATCC 23134]
Length = 420
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 69/211 (32%), Positives = 108/211 (51%), Gaps = 30/211 (14%)
Query: 198 PKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSD 257
PK + T++++ LT +EL +L E + S+K ++R+RD F+FQCFTGL + D+ +L++
Sbjct: 231 PKDEKTKREV--LTLEELKKLMELDL-SDKLNMDRIRDCFVFQCFTGLAFVDIDSLKKEH 287
Query: 258 I----KDDHIEVTTVKTSDSLIIELNNHSKAILDKYKD--VAFEDDKVLPVITNQKMNDY 311
+ + I VK+S + L ++ ILDKY+D V DK++PVI+N+ N Y
Sbjct: 288 LFKRNERTWIIKERVKSSTVAKVPLLPQAQVILDKYRDDPVCAGKDKLIPVISNKNYNVY 347
Query: 312 LKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGIPPQVVMK 371
L+ +AELA I++ L +H GR+TF G + +
Sbjct: 348 LQSMAELASIEKH---------------------LTSHVGRKTFATLVYNAGTDRSKLKE 386
Query: 372 WTGHSDYKAMKPYIDIADDIKANAMSKFNQL 402
TGHSD + Y I DD + KF L
Sbjct: 387 MTGHSDETITQIYASITDDTLEREIDKFEGL 417
>gi|60681592|ref|YP_211736.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
gi|60493026|emb|CAH07806.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
Length = 416
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 106/413 (25%), Positives = 178/413 (43%), Gaps = 74/413 (17%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
MR+ + E I W+ K+ CS + A E+N + ++ I
Sbjct: 39 MRITVNKRVAEVMIKRSIPVDLWNQKKE-----CSKGKDRVAIELNHYINTVRAKVLQIH 93
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDC----GRQN 116
+ E+++ T + IK F ++ + +V+ + E C G++
Sbjct: 94 RELEIDNKPITADIIKDCFYG------------RDKVQRSLQEVYKEHNEKCRALIGKE- 140
Query: 117 NWTDSTFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGK 170
+T+ST KF N L + R+ + D + + D+ +L+ K +N + K
Sbjct: 141 -YTESTVIKFDTSINRLKEYIRSCYHRDDIMLAELDGQFIRDFDFWLKTEKHCQNNSALK 199
Query: 171 QLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQ 228
L LK +R A + + + Y K + + FL+ +EL+ L +EF I +
Sbjct: 200 HLKNLKKVVRIALANDWIKKDPF--YGIHFKQEEVNVEFLSREELDILMNKEFAI----K 253
Query: 229 ALERVRDVFLFQCFTGLRYSDVFNLRRSDIKDDH-----IEVTTVKTSDSLIIELNNHSK 283
LE+VRD+F+F CFT L + DV L R + D+ I KT+ I + + +
Sbjct: 254 RLEQVRDIFVFCCFTALAFVDVQQLSREHLIKDNSGALWIRKARQKTNQMCNIPVLSIPQ 313
Query: 284 AILDKYKDVA--FEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTP 341
IL KY+D A + +LPVI+NQ+MN YLKE+A+L GI +
Sbjct: 314 RILRKYEDNAECIKKGVLLPVISNQRMNAYLKEIADLCGITKR----------------- 356
Query: 342 KYALLGTHAGRRT-----FICNALALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
L TH R T F+ N +++ + V K GHS+ + + Y + D
Sbjct: 357 ----LTTHVARHTAATIVFLANDVSM----ENVSKILGHSNIRMTQHYAKVLD 401
>gi|67940412|ref|ZP_00532834.1| Phage integrase [Chlorobium phaeobacteroides BS1]
gi|67913374|gb|EAM62800.1| Phage integrase [Chlorobium phaeobacteroides BS1]
Length = 412
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 101/416 (24%), Positives = 171/416 (41%), Gaps = 66/416 (15%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNK--LKQSASEINASLLEYYTEIQS 58
+R+ +KR+E +T I+ WD+ K + L + A++ Y ++S
Sbjct: 26 IRITLDAKRLELSTNRNINPDNWDSGLGVAKGKSDDAIILNNYLDNLRANVHRQYNILES 85
Query: 59 IFKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNW 118
+ K +E + +E + Y V++ + R+ N+
Sbjct: 86 LGKPLTIESI-------------------KERLTGQGEKKYTLLFVYEYHNSEMNRRVNF 126
Query: 119 --TDSTFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGK 170
T++ + N L +F R+ + E + + Y YL+ ++ T K
Sbjct: 127 DIAPGTYKMYKVSINKLRDFIQYQFGRKDVLLESLNHAFITKYEVYLKTEQKCGINTTNK 186
Query: 171 QLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQ 228
L LK + + ++ + + K ++K FLT DEL ++ +E +P
Sbjct: 187 YLVHLKKVVNLSISNEWLSHDPFSKHHCAYKPAERK--FLTSDELYKIESKEITLPR--- 241
Query: 229 ALERVRDVFLFQCFTGLRYSDVFNLRRSDIK-----DDHIEVTTVKTSDSLIIELNNHSK 283
L++VRD+F+F C+TG DV L SDI + I + KT I L +
Sbjct: 242 -LQKVRDIFVFCCYTGFAQCDVEALTPSDISTGIDGEKWIIINRKKTDGRSPIPLLPQAL 300
Query: 284 AILDKYKD--VAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTP 341
AI++KYK+ +LPV +NQ+MN YLKE+A++ GI +
Sbjct: 301 AIVNKYKNDPETLAKGTLLPVNSNQRMNGYLKEIADITGITKN----------------- 343
Query: 342 KYALLGTHAGRRTFICN-ALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAM 396
L H R TF L+ G+P + V K GHS K + Y + D +N M
Sbjct: 344 ----LTMHLARHTFATTVTLSNGVPIESVSKMLGHSSIKTTQIYSKVVDTKISNDM 395
>gi|150003228|ref|YP_001297972.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|149931652|gb|ABR38350.1| transposase [Bacteroides vulgatus ATCC 8482]
Length = 411
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 84/281 (29%), Positives = 125/281 (44%), Gaps = 43/281 (15%)
Query: 137 REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSY 196
+E +TF + + YL+ + TI + + K F A K + N + Y
Sbjct: 154 KEDVTFHELTPEFIRAFDIYLKTEAGLCRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGY 213
Query: 197 KPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLR 254
K ++ + +FLT+DEL + ++F IP LE VRDVF+F CFTGL +SDV +L
Sbjct: 214 K--MEQDETDPVFLTYDELQTVMKKKFTIPR----LELVRDVFVFACFTGLAFSDVASLN 267
Query: 255 RSDIKDDHIEVTTV-----------KTSDSLIIELNNHSKAILDKYKD--VAFEDDKVLP 301
+ ++ D++ + K S I L AIL+KYK+ + LP
Sbjct: 268 KENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVPLAILEKYKEHPTCIKKGCCLP 327
Query: 302 VITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTF-ICNAL 360
V+ NQKMN YLKE+A+ GI K N L TH R TF L
Sbjct: 328 VMCNQKMNSYLKEIADFCGI---------KKN------------LTTHVARHTFGTTVTL 366
Query: 361 ALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
A +P Q V GH+ + + Y + + AM+ +
Sbjct: 367 ANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNTVKE 407
>gi|153808509|ref|ZP_01961177.1| hypothetical protein BACCAC_02803 [Bacteroides caccae ATCC 43185]
gi|149128831|gb|EDM20048.1| hypothetical protein BACCAC_02803 [Bacteroides caccae ATCC 43185]
Length = 262
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 12/244 (4%)
Query: 1 MRVNFASKRIE--FTTGYRIDSAKWDADKQRVKNGCSNKLKQS---ASEINASLLEYYTE 55
+RV + +++ E F+ G D KWD + QRV+ ++K+ A +IN + ++
Sbjct: 20 IRVRWNNRKCEVGFSVGCNADLEKWDNENQRVRYNTTHKVGGKVYVARDINNRISQFLEC 79
Query: 56 IQSIFKRFEVEDVMPT-PEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGR 114
I+ F + V +PT E + + + K + ++E F ++F+DF+E C
Sbjct: 80 IEESFTEYGVHSQIPTTKELVNEKLGRIEKEIVVVGSIEREK---SFREIFNDFLEVCSI 136
Query: 115 QNNWTDSTFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVG-YLRDVKEMRNTTIGKQLS 173
+ +W+ S K+ V N L + ++ DE + + Y+++ RN T KQ
Sbjct: 137 ERSWSGSVHHKYVQVWNQLNSCDPDISLVILDENKMTELKKCYVKN--GYRNRTTVKQFR 194
Query: 174 FLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERV 233
LK FLRW G + K L T+K++ FL + EL F+ P +K+ L+R
Sbjct: 195 ILKSFLRWIAANGYPVGQGVLNCKVNLTVTKKEVTFLKYKELLHFASFQFPKSKEYLDRA 254
Query: 234 RDVF 237
R ++
Sbjct: 255 RYIY 258
>gi|154494486|ref|ZP_02033806.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC
43184]
gi|154085930|gb|EDN84975.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC
43184]
Length = 411
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 83/281 (29%), Positives = 127/281 (45%), Gaps = 43/281 (15%)
Query: 137 REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSY 196
+E +TF + + YL+ + TI + + K F A K + N + Y
Sbjct: 154 KEDVTFHELTPEFIRAFDIYLKTEAGLCRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGY 213
Query: 197 KPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLR 254
K ++ + +FLT+DEL + ++F IP LE VRDVF+F CFTGL +SDV L
Sbjct: 214 K--MEQDETDPVFLTYDELQTVMKKKFTIPR----LELVRDVFVFACFTGLAFSDVATLS 267
Query: 255 RSDIKDDH----------IEVTTVKTSDSLI-IELNNHSKAILDKYKD--VAFEDDKVLP 301
++ D+ +++ + + S+ I L AIL+KY++ V + LP
Sbjct: 268 GENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVPLAILEKYREHPVCIKKGCCLP 327
Query: 302 VITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTF-ICNAL 360
V+ NQKMN YLKE+A+ GI K N L TH R TF L
Sbjct: 328 VMCNQKMNSYLKEIADFCGI---------KKN------------LTTHVARHTFGTTVTL 366
Query: 361 ALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
A +P Q V GH+ + + Y + + AM+ +
Sbjct: 367 ANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKE 407
>gi|53713347|ref|YP_099339.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52216212|dbj|BAD48805.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 409
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 106/413 (25%), Positives = 177/413 (42%), Gaps = 74/413 (17%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
MR+ + E I W+ K+ CS + A E+N + ++ I
Sbjct: 30 MRITVNKRVAEVMIKRSIPVDLWNQKKE-----CSKGKDRVAIELNHYINTVRAKVLQIH 84
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDC----GRQN 116
+ E+++ T + IK F ++ + +V+ + E C G++
Sbjct: 85 RELEIDNKPITADIIKDCFYG------------RDKVQRTLLEVYAEHNEKCRALIGKE- 131
Query: 117 NWTDSTFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGK 170
+T+ST KF N L + R+ + D + + D+ +L+ K +N + K
Sbjct: 132 -YTESTVTKFDTSINRLKEYIRSCYHRDDIMLAELDGQFIRDFDFWLKTEKHCQNNSALK 190
Query: 171 QLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQ 228
L LK +R A + + + Y K + + FL +EL+ L +EF I +
Sbjct: 191 HLKNLKKVVRIALANDWIKKDPF--YGIHFKQEEVNVEFLLREELDVLMNKEFTI----K 244
Query: 229 ALERVRDVFLFQCFTGLRYSDVFNLRRSD-IKDDH----IEVTTVKTSDSLIIELNNHSK 283
LE+VRDVF+F CFT L + DV L R IKD++ I KT+ + + + +
Sbjct: 245 RLEQVRDVFVFCCFTALAFVDVQQLSREHLIKDNNGALWIRKARQKTNQMCNVPVLSIPQ 304
Query: 284 AILDKYKD--VAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTP 341
IL KY D + +LPVI+NQ+MN YLKE+A++ GI +
Sbjct: 305 RILRKYDDNVECIKKGVLLPVISNQRMNAYLKEIADVCGIAKR----------------- 347
Query: 342 KYALLGTHAGRRT-----FICNALALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
L TH R T F+ N +++ + V K GHS+ + + Y + D
Sbjct: 348 ----LTTHVARHTAATVVFLANDVSM----ENVSKILGHSNIRMTQHYAKVLD 392
>gi|150010411|ref|YP_001305154.1| transposase [Parabacteroides distasonis ATCC 8503]
gi|149938835|gb|ABR45532.1| transposase [Parabacteroides distasonis ATCC 8503]
Length = 411
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 105/408 (25%), Positives = 167/408 (40%), Gaps = 78/408 (19%)
Query: 23 WDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMPTPEQI-KKAFN- 80
W+A K GCS +++ +N + E + K +E + TP+ I K+ F
Sbjct: 49 WNAAK-----GCSKGRDRASVALNTYIAELHARALEKHKELVLEQALITPKLILKRVFGK 103
Query: 81 -----ALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVKNHLTN 135
L + E K + D+ V T ++ V L
Sbjct: 104 DTEMRTLLGTMMEGIKEMETLAGIDYSPV-----------------TINRYKNVVKKLQQ 146
Query: 136 F------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQ 189
F +E +TF ++ + YL+ + TI + + K F A K +
Sbjct: 147 FIPSYYGKEEVTFHELTPEFIHAFDIYLKTEGRLCRNTIVRYMKCFKKFTNMALAKEWMR 206
Query: 190 NNAYDSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQALERVRDVFLFQCFTGLRY 247
N + YK ++ + +FLT+DEL + ++F IP LE VRD+F+F CFTGL +
Sbjct: 207 KNPFYGYK--MEQDETDPVFLTYDELQAVMKKKFTIPR----LELVRDIFVFACFTGLAF 260
Query: 248 SDVFNLRRSDIKDDH----------IEVTTVKTSDSLI-IELNNHSKAILDKYKD--VAF 294
SDV +L + D+ +++ + + S+ I L AIL+KY++
Sbjct: 261 SDVASLNNEHLVQDNLGDWWIRKGRVKLERRRKASSISNIPLLPVPLAILEKYREHPACI 320
Query: 295 EDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRT 354
+ LPV+ NQKMN YLKE+A+ GI K N L TH R T
Sbjct: 321 KKGCCLPVMCNQKMNSYLKEIADFCGI---------KKN------------LTTHVARHT 359
Query: 355 F-ICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
F LA +P Q V GH+ + + Y + + AM+ +
Sbjct: 360 FGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKAAMNNVKE 407
>gi|154493767|ref|ZP_02033087.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
43184]
gi|154086517|gb|EDN85562.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
43184]
gi|156860434|gb|EDO53865.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492]
Length = 454
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 101/404 (25%), Positives = 167/404 (41%), Gaps = 70/404 (17%)
Query: 23 WDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMPTPEQI-KKAFNA 81
W+A K GCS +++ +N + E + K +E + TP+ I K+ F
Sbjct: 92 WNAAK-----GCSKGRDRASIALNTYIAELHARALEKHKELVLEQALITPKLILKRVFG- 145
Query: 82 LHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQN--NWTDSTFEKFAAVKNHLTNF--- 136
K+ D +++ +++ T ++ V L
Sbjct: 146 ------------KDTEMRTLLGTMQDGIKEMETLTGIDYSPVTINRYKNVVKKLQRLIPS 193
Query: 137 ---REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAY 193
+E +TF + + YL+ + TI + + K F A K + N +
Sbjct: 194 YYGKEDITFHELTPEFIRAFDIYLKTEGGLCRNTIVRYMKCFKKFTNMALAKEWMRKNPF 253
Query: 194 DSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQALERVRDVFLFQCFTGLRYSDVF 251
YK ++ + +FLT+DEL + ++F IP LE VRD+F+F CFTGL +SDV
Sbjct: 254 YGYK--MEQDETDPVFLTYDELQAVMKKKFTIPR----LELVRDIFVFACFTGLAFSDVA 307
Query: 252 NLRRSDIKDDH----------IEVTTVKTSDSLI-IELNNHSKAILDKYKD--VAFEDDK 298
L ++ D+ +++ + + S+ I L AIL+KY++ + +
Sbjct: 308 TLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVPLAILEKYREHPICVKKGC 367
Query: 299 VLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTF-IC 357
LPV+ NQKMN YLKE+A+ GI K N L TH R TF
Sbjct: 368 CLPVMCNQKMNSYLKEIADFCGI---------KKN------------LTTHVARHTFGTT 406
Query: 358 NALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
LA +P Q V GH+ + + Y + + AM+ +
Sbjct: 407 VTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKE 450
>gi|150004164|ref|YP_001298908.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|149932588|gb|ABR39286.1| transposase [Bacteroides vulgatus ATCC 8482]
Length = 411
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 101/404 (25%), Positives = 167/404 (41%), Gaps = 70/404 (17%)
Query: 23 WDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMPTPEQI-KKAFNA 81
W+A K GCS +++ +N + E + K +E + TP+ I K+ F
Sbjct: 49 WNAAK-----GCSKGRDRASIALNTYIAELHARALEKHKELVLEQALITPKLILKRVFG- 102
Query: 82 LHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQN--NWTDSTFEKFAAVKNHLTNF--- 136
K+ D +++ +++ T ++ V L
Sbjct: 103 ------------KDTEMRTLLGTMQDGIKEMETLTGIDYSPVTINRYKNVVKKLQRLIPS 150
Query: 137 ---REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAY 193
+E +TF + + YL+ + TI + + K F A K + N +
Sbjct: 151 YYGKEDITFHELTPEFIRAFDIYLKTEGGLCRNTIVRYMKCFKKFTNMALAKEWMRKNPF 210
Query: 194 DSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQALERVRDVFLFQCFTGLRYSDVF 251
YK ++ + +FLT+DEL + ++F IP LE VRD+F+F CFTGL +SDV
Sbjct: 211 YGYK--MEQDETDPVFLTYDELQAVMKKKFTIPR----LELVRDIFVFACFTGLAFSDVA 264
Query: 252 NLRRSDIKDDH----------IEVTTVKTSDSLI-IELNNHSKAILDKYKD--VAFEDDK 298
L ++ D+ +++ + + S+ I L AIL+KY++ + +
Sbjct: 265 TLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVPLAILEKYREHPICVKKGC 324
Query: 299 VLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTF-IC 357
LPV+ NQKMN YLKE+A+ GI K N L TH R TF
Sbjct: 325 CLPVMCNQKMNSYLKEIADFCGI---------KKN------------LTTHVARHTFGTT 363
Query: 358 NALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
LA +P Q V GH+ + + Y + + AM+ +
Sbjct: 364 VTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKE 407
>gi|54307145|ref|YP_133699.1| IntN1 [Bacteroides uniformis]
gi|8308020|gb|AAF74437.1|AF238307_1 IntN1 [Bacteroides uniformis]
gi|156862591|gb|EDO56022.1| hypothetical protein BACUNI_00309 [Bacteroides uniformis ATCC 8492]
Length = 445
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 117/228 (51%), Gaps = 12/228 (5%)
Query: 172 LSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALE 231
S ++ F W F N +D + P + T ++T +E +R+ + + Q L
Sbjct: 219 FSRIRTFFLWCFDNKRTTNRPFDKF-PIEECTYGTPYYITLEERDRIFNADLSATPQ-LA 276
Query: 232 RVRDVFLFQCFTGLRYSDVFNLRRSDIKDDHIEVTTVKTSD----SLIIELNNHSKAILD 287
RD+F+FQ G R SD++ + + ++ ++ IE KT + ++ + LN+ +K IL+
Sbjct: 277 IQRDIFIFQTLIGCRVSDLYRMTKLNVVNEAIEYIPKKTKEGNPVTVRVPLNDKAKEILE 336
Query: 288 KYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
+YK+ + K+LP I+ QK ND +K++ +LAG+D + + I P Y +
Sbjct: 337 RYKEY---EGKLLPFISEQKYNDAIKKIFKLAGVDRIVTILDPLTHNEIK--RPIYEVAS 391
Query: 348 THAGRRTFICNALALGIPPQVVMKWTGHSD-YKAMKPYIDIADDIKAN 394
+H RRTFI N P +V +GH + KA + Y DI +++K +
Sbjct: 392 SHLARRTFIGNIYKKVKDPNLVSALSGHKEGSKAFRRYRDIDEEMKKD 439
>gi|53713277|ref|YP_099269.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52216142|dbj|BAD48735.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 435
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 96/402 (23%), Positives = 167/402 (41%), Gaps = 57/402 (14%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGC--SNKLKQSASEINASLLEYYTEIQSI 59
R++ ++ +F+ +DSA WDA R+K +N++ + + S+ +Y+ E+
Sbjct: 36 RISVNAETAQFSARIDVDSALWDAKTYRMKGKSREANQVNRELDRLTESIEKYHAELLQ- 94
Query: 60 FKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWT 119
+ T E +K + + KK+ L F + +++ + G N T
Sbjct: 95 ------QQGYVTAELVKNMLWGIGR--------KKDTLLSLFVEHNEEYAQKVGV--NRT 138
Query: 120 DSTFEKFAAVKNHLTNFRE------GLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLS 173
+ T+ + V NH+ F + + + + + YLR K TIG
Sbjct: 139 EETYSHYVVVYNHVRQFLQTRHHMKDIALKQLTHSFIEQFDFYLRTEKRHSANTIGGYTI 198
Query: 174 FLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERV 233
LK +R A +G + + Y+P+ +K +T DEL RL +I S ++L
Sbjct: 199 LLKKIIRRAINQGTLLRDPFADYRPE--QPPQKCRHMTADELERLMATRIAS--KSLCHT 254
Query: 234 RDVFLFQCFTGLRYSDVFNLRRSDIKDDH-----IEVTTVKTSDSLIIELNNHSKAILDK 288
RD+F+F FTG+ Y+D+ NL SDI I KT + L + K I++K
Sbjct: 255 RDMFVFATFTGISYADLCNLSISDISKSSNGTMWIHFKRQKTGSECHVRLLDIPKQIIEK 314
Query: 289 YKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGT 348
YK + D++ ++ LK++A+L GI I T+
Sbjct: 315 YKP-ERKGDRIFNMVGYSSTAANLKKVAKLCGIARNI--TF------------------- 352
Query: 349 HAGRRTF-ICNALALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
H R F L G+P + V + GH K + Y + +
Sbjct: 353 HMARHNFGTLITLPQGVPLETVSRMMGHLGIKTTQLYAKLTN 394
>gi|1263306|gb|AAB06447.1| integrase IntN1 [Bacteroides uniformis]
Length = 445
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 12/228 (5%)
Query: 172 LSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALE 231
S ++ F W F N +D + P + T ++T +E +R+ + + Q L
Sbjct: 219 FSRIRTFFLWCFDNKRTTNRPFDKF-PIEECTYGTPYYITLEERDRIFNADLSATPQ-LA 276
Query: 232 RVRDVFLFQCFTGLRYSDVFNLRRSDIKDDHIEVTTVKTSD----SLIIELNNHSKAILD 287
RD+F+FQ G R SD++ + + ++ ++ I+ KT + ++ + LN+ +K IL+
Sbjct: 277 IQRDIFIFQTLIGCRVSDLYRMTKLNVVNEAIQYIPKKTKEGNPVTVRVPLNDKAKEILE 336
Query: 288 KYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
+YK+ + K+LP I+ QK ND +K++ +LAG+D + + I P Y +
Sbjct: 337 RYKEY---EGKLLPFISEQKYNDAIKKIFKLAGVDRIVTILDPLTHNEIK--RPIYEVAS 391
Query: 348 THAGRRTFICNALALGIPPQVVMKWTGHSD-YKAMKPYIDIADDIKAN 394
+H RRTFI N P +V +GH + KA + Y DI +++K +
Sbjct: 392 SHLARRTFIGNIYKKVKDPNLVSALSGHKEGSKAFRRYRDIDEEMKKD 439
>gi|150009849|ref|YP_001304592.1| transposase [Parabacteroides distasonis ATCC 8503]
gi|149938273|gb|ABR44970.1| transposase [Parabacteroides distasonis ATCC 8503]
Length = 415
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 98/390 (25%), Positives = 163/390 (41%), Gaps = 51/390 (13%)
Query: 11 EFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMP 70
+F+ + WD VK + A +INA++ ++ ++ D
Sbjct: 41 QFSCKLDVPPKLWD-----VKTARATGKSAEAQKINAAVDRIRVDVNRRYQELMQSDGYV 95
Query: 71 TPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVK 130
T +++ A L K+E L F Q ++F++ G T+ ++ +
Sbjct: 96 TAARLRDACLGL--------GVKRETLLKLFEQHNEEFIKKVGHSR--VQGTYNRYRTIY 145
Query: 131 NHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFK 184
HL F R+ + + + +N++ +LR K+ R T+ + LK + A
Sbjct: 146 RHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKKCRTNTVWGYMIGLKHVISIARN 205
Query: 185 KGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTG 244
G N + Y +S + +LT E+ L E P E VRD+F+F FTG
Sbjct: 206 SGALPFNPFAGYINSPESVDRG--YLTEREIQTLME--APVKSGTCELVRDLFIFSVFTG 261
Query: 245 LRYSDVFNL---RRSDIKDDHIEVTT--VKTSDSLIIELNNHSKAILDKYKDVAFEDDKV 299
L Y+DV L R D ++ + T KT+ I L + K I++KYK ++ +DD V
Sbjct: 262 LAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPKRIIEKYKGLS-KDDHV 320
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
PV +N + N LKEL G IR TY+ + H T +
Sbjct: 321 FPVPSNGRCNTILKELGRQCGFK--IRLTYH---------------VARHTNATTVL--- 360
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
L+ G+P + V + GH+D K + Y I +
Sbjct: 361 LSHGVPIETVSRLLGHTDLKTTQIYARITN 390
>gi|154491478|ref|ZP_02031104.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC
43184]
gi|154088467|gb|EDN87512.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC
43184]
Length = 415
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 98/390 (25%), Positives = 162/390 (41%), Gaps = 51/390 (13%)
Query: 11 EFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMP 70
+F+ + WD VK + A +INA + ++ ++ D
Sbjct: 41 QFSCKLDVPPKLWD-----VKTARATGKSAEAQKINAEVDRIRVDVNRRYQELMQSDGYV 95
Query: 71 TPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVK 130
T +++ A L K+E L F Q ++F++ G T+ ++ +
Sbjct: 96 TAARLRDACLGL--------GVKRETLLKLFEQHNEEFIKKVGHSR--VQGTYNRYRTIY 145
Query: 131 NHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFK 184
HL F R+ + + + +N++ +LR K+ R T+ + LK + A
Sbjct: 146 RHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKKCRTNTVWGYMIGLKHVISIARN 205
Query: 185 KGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTG 244
G N + Y +S + +LT E+ L E P E VRD+F+F FTG
Sbjct: 206 SGALPFNPFAGYINSPESVDRG--YLTEREIQTLME--APVKSGTCELVRDLFIFSVFTG 261
Query: 245 LRYSDVFNL---RRSDIKDDHIEVTT--VKTSDSLIIELNNHSKAILDKYKDVAFEDDKV 299
L Y+DV L R D ++ + T KT+ I L + K I++KYK ++ +DD V
Sbjct: 262 LAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPKRIIEKYKGLS-KDDHV 320
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
PV +N + N LKEL G IR TY+ + H T +
Sbjct: 321 FPVPSNGRCNTILKELGRQCGFK--IRLTYH---------------VARHTNATTVL--- 360
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
L+ G+P + V + GH+D K + Y I +
Sbjct: 361 LSHGVPIETVSRLLGHTDLKTTQIYARITN 390
>gi|53713608|ref|YP_099600.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52216473|dbj|BAD49066.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 331
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 72/279 (25%), Positives = 127/279 (45%), Gaps = 16/279 (5%)
Query: 126 FAAVKNHLTNFREGLTFEFFDE----RGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRW 181
+ A+ H+ NF + F L+D++ YL + NT +G + L+ +R
Sbjct: 55 YDAIIKHVDNFSREYDCDIFTNSVTAEFLDDFIIYLENCGLRHNTIVG-YIQKLQSLIRR 113
Query: 182 AFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSN--KQALERVRDVFLF 239
A + + YD K + T IFL+ +E+ R+ +K ++A ER+RD+F+
Sbjct: 114 ASQYNYAVDTTYDEIDMKEEPTNA--IFLSMNEITRIYYYKFAKQDKRKAKERIRDLFVI 171
Query: 240 QCFTGLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKV 299
C T LRYSD L + +++ I T KT+ + + +++ K I +KY D +
Sbjct: 172 GCLTALRYSDYSTLTQDNLQGCFIVKRTRKTNVDVKVPAHDYVKEIFEKY------DGDI 225
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
+ Q N YLK + G+ + + ++ +G + K+ L+ +H RR+ N
Sbjct: 226 PTGLCIQHFNKYLKVIMREIGLTDKVSYSFTQGGKLHTVTKEKWELISSHTARRSAATNM 285
Query: 360 LALG-IPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMS 397
G + +MK TGH YI + D A ++S
Sbjct: 286 YLTGRMKTLEIMKLTGHRSEHNFFRYIRLTGDDTARSIS 324
>gi|150008853|ref|YP_001303596.1| transposase [Parabacteroides distasonis ATCC 8503]
gi|149937277|gb|ABR43974.1| transposase [Parabacteroides distasonis ATCC 8503]
Length = 415
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 98/390 (25%), Positives = 162/390 (41%), Gaps = 51/390 (13%)
Query: 11 EFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMP 70
+F+ + WD VK + A +INA++ ++ ++ D
Sbjct: 41 QFSCKLDVPPKLWD-----VKTARATGKSAEAQKINAAVDRIRVDVNRRYQELMQSDGYV 95
Query: 71 TPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVK 130
T +++ A L K+E L F Q +F++ G T+ ++ +
Sbjct: 96 TAARLRDACLGL--------GVKRETLLKLFEQHNGEFIKKVGHSR--VQGTYNRYRTIY 145
Query: 131 NHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFK 184
HL F R+ + + + +N++ +LR K+ R T+ + LK + A
Sbjct: 146 RHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKKCRTNTVWGYMIGLKHVISIARN 205
Query: 185 KGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTG 244
G N + Y +S + +LT E+ L E P E VRD+F+F FTG
Sbjct: 206 SGALPFNPFAGYINSPESVDRG--YLTEREIQTLME--APVKSGTCELVRDLFIFSVFTG 261
Query: 245 LRYSDVFNL---RRSDIKDDHIEVTT--VKTSDSLIIELNNHSKAILDKYKDVAFEDDKV 299
L Y+DV L R D ++ + T KT+ I L + K I++KYK ++ +DD V
Sbjct: 262 LAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPKRIIEKYKGLS-KDDHV 320
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
PV +N + N LKEL G IR TY+ + H T +
Sbjct: 321 FPVPSNGRCNTILKELGRQCGFK--IRLTYH---------------VARHTNATTVL--- 360
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
L+ G+P + V + GH+D K + Y I +
Sbjct: 361 LSHGVPIETVSRLLGHTDLKTTQIYARITN 390
>gi|29346548|ref|NP_810051.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29338444|gb|AAO76245.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 411
Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 97/390 (24%), Positives = 163/390 (41%), Gaps = 51/390 (13%)
Query: 11 EFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMP 70
+F+ + WD VK + A +INA++ ++ ++ D
Sbjct: 37 QFSCKLDVPPKLWD-----VKTARATGKSAEAQKINAAVDRIRVDVNRRYQELMQSDGYV 91
Query: 71 TPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVK 130
T +++ A L K+E L F Q ++F++ G T+ ++ +
Sbjct: 92 TAARLRDACLGL--------GVKRETLLKLFEQHNEEFIKKVGHSR--VQGTYNRYRTIY 141
Query: 131 NHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFK 184
HL F R+ + + + +N++ +LR K+ R T+ + LK + A
Sbjct: 142 RHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKKCRTNTVWGYMIGLKHVISIARN 201
Query: 185 KGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTG 244
G N + Y +S + +LT E+ L E P E VRD+F+F FTG
Sbjct: 202 SGALPFNPFAGYINSPESVDRG--YLTEREIQTLME--TPVKSGTCELVRDLFIFSVFTG 257
Query: 245 LRYSDVFNL---RRSDIKDDHIEVTT--VKTSDSLIIELNNHSKAILDKYKDVAFEDDKV 299
L Y+DV L R D ++ + T KT+ I L + K I++KYK+++ +D V
Sbjct: 258 LAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPKRIIEKYKELS-KDGHV 316
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
PV +N + N LKEL G IR TY+ + H T +
Sbjct: 317 FPVPSNGRCNTILKELGRQCGFK--IRLTYH---------------VARHTNATTVL--- 356
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
L+ G+P + V + GH+D K + Y I +
Sbjct: 357 LSHGVPIETVSRLLGHTDLKTTQIYARITN 386
>gi|83857491|ref|ZP_00951019.1| putative transposase [Croceibacter atlanticus HTCC2559]
gi|83848858|gb|EAP86727.1| putative transposase [Croceibacter atlanticus HTCC2559]
Length = 416
Score = 85.1 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 99/414 (23%), Positives = 169/414 (40%), Gaps = 56/414 (13%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSN--KLKQSASEINASLLEYYTEIQS 58
+R+ KR+ + ++++ KWD + +VK ++ +L +++N LLE
Sbjct: 27 VRITVNKKRVYLSLKRKVEATKWDTSQSKVKGHSADARQLNDYINQVNRRLLE------- 79
Query: 59 IFKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNW 118
+ K+ E E + T + IK A + V + K + L Y ++ +
Sbjct: 80 VHKQLEDEQRVITAQAIK----ARYLGVDDTFKKLSDILTYHEDKMRTILKPGTLKNYKT 135
Query: 119 TDSTFEKFAAVKNHLTN-FREGLTFEFFDERGLNDYVGYLRDVKEM------RNTTIGKQ 171
T +KF K + F + + + F E + +LR K N + K
Sbjct: 136 TSKYLKKFLKTKMKTDDVFLKHINYSFITE-----FEHFLRTFKSKTHRPTPSNNGVMKH 190
Query: 172 LSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALE 231
L LK + A K + + K +++ + DE+ K S++ AL
Sbjct: 191 LERLKKLMNLAQKLEWVAKEPFAKFSLKFTKVEREFL----DEVEVQELIKFTSHRTALT 246
Query: 232 RVRDVFLFQCFTGLRYSDVFNLRRSDI-----KDDHIEVTTVKTSDSLIIELNNHSKAIL 286
+ RDVF+F C+TGL + DV NL + I + I KT + I L + +L
Sbjct: 247 QTRDVFIFACYTGLSWIDVKNLSQDHIVRGIDGSNWIYTAREKTDTPVKIPLLPIPEKLL 306
Query: 287 DKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALL 346
+Y + + + +LPV +NQK N YLKE+A GI + L
Sbjct: 307 SRYAEKMMDSELLLPVYSNQKTNKYLKEIAIELGIRKK---------------------L 345
Query: 347 GTHAGRRTFICN-ALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
H R TF L+ G+P + V K GH+ + Y + + +N M+K
Sbjct: 346 TFHVARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVIESKVSNDMNKL 399
>gi|150005337|ref|YP_001300081.1| integrase protein [Bacteroides vulgatus ATCC 8482]
gi|149933761|gb|ABR40459.1| integrase protein [Bacteroides vulgatus ATCC 8482]
Length = 407
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 95/388 (24%), Positives = 159/388 (40%), Gaps = 58/388 (14%)
Query: 8 KRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVED 67
++I T + W + +V N ++E+NA L EY +Q I +
Sbjct: 34 RKIYLKTNVYLKPECWSREGAQVIN------HPQSNELNAMLYEYILYLQGIELGYWKRG 87
Query: 68 VMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFA 127
+ T +K A KK A+ F +++ ++ + D+ A
Sbjct: 88 IPATLSLLKDAVK------------KKSAVNVSFSTFAKSAIDNSDKKQSTKDNLHSTLA 135
Query: 128 AVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGV 187
L +FR GL F+ L D+ YLR+ NT I K + L+ + A +G
Sbjct: 136 V----LNDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNT-IAKHMRQLRTLVNEAINQGY 190
Query: 188 HQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRY 247
+AY K K+K + + FLT DEL +L ++ ++++ V D FLF C+TGLRY
Sbjct: 191 MHADAYPFRKYKIKQEKGRHEFLTPDELKKLETVEV--EEKSMRHVLDAFLFCCYTGLRY 248
Query: 248 SDVFNLRRSDI----KDDHIEVTTVKTSDSLIIELN----NHSKAILDKYKDVAFEDDKV 299
SD L + + +VKT + + L+ + + ILD+Y D+ +
Sbjct: 249 SDFCQLTPENFIRVNGKRWLYFKSVKTGVEIRLPLHLLFESRALGILDRYPDIG----SL 304
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
+ + N ++N L++L L GI + R TY H R T
Sbjct: 305 VSLPCNSEVNKQLRKLTGLCGIKK--RITY-------------------HVSRHTCATLL 343
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPYIDI 387
+ G+ V K GH+ K + Y ++
Sbjct: 344 VHQGVAITTVQKLLGHTSVKTTQIYSEV 371
>gi|154492102|ref|ZP_02031728.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC
43184]
gi|154087327|gb|EDN86372.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC
43184]
Length = 415
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 97/390 (24%), Positives = 162/390 (41%), Gaps = 51/390 (13%)
Query: 11 EFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMP 70
+F+ + WD VK + A +INA++ ++ ++ D
Sbjct: 41 QFSCKLDVPPKLWD-----VKTARATGKSAEAQKINAAVDRIRVDVNRRYQELMQSDGYV 95
Query: 71 TPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVK 130
T +++ A L K+E L F Q ++F++ G T+ ++ +
Sbjct: 96 TAARLRDACLGL--------GVKRETLLKLFEQHNEEFIKKVGHSR--VQGTYNRYRTIY 145
Query: 131 NHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFK 184
HL F R+ + + + +N++ +LR K+ R T+ + LK + A
Sbjct: 146 RHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKKCRTNTVWGYMIGLKHVISIARN 205
Query: 185 KGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTG 244
G N + Y +S + +LT E+ L E P E VRD+F+F FTG
Sbjct: 206 SGALPFNPFAGYINSPESVDRG--YLTECEIQTLME--TPVKSGTCELVRDLFIFSVFTG 261
Query: 245 LRYSDVFNL---RRSDIKDDHIEVTT--VKTSDSLIIELNNHSKAILDKYKDVAFEDDKV 299
L Y+DV L R D ++ + T KT+ I L + K I++KYK ++ +D V
Sbjct: 262 LAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPKRIIEKYKGLS-KDGHV 320
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
PV +N + N LKEL G IR TY+ + H T +
Sbjct: 321 FPVPSNGRCNTILKELGRQCGFK--IRLTYH---------------VARHTNATTVL--- 360
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
L+ G+P + V + GH+D K + Y I +
Sbjct: 361 LSHGVPIETVSRLLGHTDLKTTQIYARITN 390
>gi|3930211|gb|AAC80279.1| transposase [Bacteroides fragilis]
Length = 410
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 100/397 (25%), Positives = 163/397 (41%), Gaps = 51/397 (12%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ + +F+ + WD VKN ++ A IN ++ + E+ ++
Sbjct: 27 RITVDGEIKQFSCKMDVPPRLWD-----VKNSRASGKSVEAQRINLAVDKIRVEVNRRYQ 81
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDS 121
D T ++K A+ + K+E L F Q +F + G
Sbjct: 82 ELMQTDGYVTAAKLKDAYLGI--------GIKQETLLKLFEQHNAEFEKKVGHSR--AQG 131
Query: 122 TFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
TF ++ V NH+ F RE + + + +ND+ +LR K+ R T+ + L
Sbjct: 132 TFTRYRTVCNHIREFLPHTYKREDILLKELNLTFINDFEYFLRTEKKCRTNTVWGYMIVL 191
Query: 176 KWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRD 235
K + A G N + Y ++ + +LT E+ L P E VRD
Sbjct: 192 KHIVSIARNDGRLPFNPFAGYINSPENVDRG--YLTQTEIQTL--MNAPMKNATHELVRD 247
Query: 236 VFLFQCFTGLRYSDVFNL---RRSDIKDDHIEVTT--VKTSDSLIIELNNHSKAILDKYK 290
+F+F FTGL YSDV NL R D ++ + T KT+ I L + K I++KYK
Sbjct: 248 LFVFSVFTGLAYSDVKNLTTDRLQTFFDGNLWIITRRKKTNTESNIRLLDVPKRIIEKYK 307
Query: 291 DVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHA 350
+A D V PV +N N LK++ G +R TY+ + H
Sbjct: 308 GLA-RDGHVFPVPSNGSCNKILKDIGRQCGFK--VRLTYH---------------VARHT 349
Query: 351 GRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDI 387
T + L+ G+P + V + GH++ K + Y I
Sbjct: 350 NATTVL---LSHGVPIETVSRLLGHTNIKTTQIYAKI 383
>gi|153809442|ref|ZP_01962110.1| hypothetical protein BACCAC_03756 [Bacteroides caccae ATCC 43185]
gi|149127902|gb|EDM19124.1| hypothetical protein BACCAC_03756 [Bacteroides caccae ATCC 43185]
Length = 207
Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 67/205 (32%), Positives = 96/205 (46%), Gaps = 41/205 (20%)
Query: 196 YKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNL 253
Y K++ + +FLT+DEL + +EF IP L VRD+F+F CFTGL + DV L
Sbjct: 7 YGYKMEQDETAPVFLTYDELQTVMNKEFTIPR----LALVRDIFIFACFTGLAFVDVSTL 62
Query: 254 RRSDIKDDH----------IEVTTVKTSDSLI-IELNNHSKAILDKYKD--VAFEDDKVL 300
++ D+ D+ I++ + + S+ I L AIL KY++ V + L
Sbjct: 63 KKEDMVQDNNGDWWIRKGRIKLMHRRKASSICNIPLLPVPLAILKKYENNPVCIKKGYCL 122
Query: 301 PVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICN-A 359
PV NQKMN YLKE+A+ GI + I TH R TF
Sbjct: 123 PVPCNQKMNSYLKEIADFCGIKKNIT---------------------THVARHTFGTTIT 161
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPY 384
LA +P Q V GH+ + + Y
Sbjct: 162 LANNVPLQDVSVMLGHASTRMTQHY 186
>gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific recombinase [Flavobacterium sp. MED217]
gi|85832557|gb|EAQ51006.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
blandensis MED217]
Length = 422
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 95/422 (22%), Positives = 173/422 (40%), Gaps = 67/422 (15%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRV--KNGCSNKLKQSASEINASLLEYYTEIQSI 59
R+ KR+ + + WD+ +RV + + +L Q + L + Y E+++
Sbjct: 28 RITMDQKRLSISLKRNVPLELWDSQSKRVLGNSVMAKQLNQYLDLTKSQLYQSYMELKA- 86
Query: 60 FKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWT 119
D + T + IK F K Q+ D E +
Sbjct: 87 ------ADKVLTAQMIKDYFMGDDKSTKT------------LVQLIDYHSEKI--KGTLA 126
Query: 120 DSTFEKFAAVKNHLTNFR-----EGLTFEFFDERGLNDYVGYLRDV------KEMRNTTI 168
T F +N++ F E + D + + D+ +L + M + T+
Sbjct: 127 KGTIRNFQITENYVLKFLKSNKLEDIFLSRLDYKFICDFESFLVQYYPKGHPRAMSHNTV 186
Query: 169 GKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQ 228
K + L+ +R A+ + + +K + T ++ FL+ EL+ L ++ P +
Sbjct: 187 MKHIQRLRKMIRLAYHLEWLDKDPFRRWKTTFEKTDRE--FLSEHELSNLATYEFPLER- 243
Query: 229 ALERVRDVFLFQCFTGLRYSDVFNLRRSDI---KDDHIEVTT--VKTSDSLIIELNNHSK 283
LERVRD+FLF C+TG+ Y+D+ L ++I +DD + T KT+ + + L +
Sbjct: 244 -LERVRDLFLFSCYTGISYADLNKLTPNNIWKGEDDKKWIVTNRQKTNTRVKVPLMPTAL 302
Query: 284 AILDKYKDVAFED--DKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTP 341
+++KY++ + + P ITN++ N YLKE+AE G+ +
Sbjct: 303 RLIEKYREHPLTEVSGTLFPPITNERANLYLKEIAEACGLTKN----------------- 345
Query: 342 KYALLGTHAGRRTFICN-ALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFN 400
L H R TF L+ G+P + V K GH+ + Y + D M+K
Sbjct: 346 ----LTFHMARHTFATTVTLSNGMPIETVSKLLGHTKIATTQIYARVLDKKVEEDMNKLQ 401
Query: 401 QL 402
++
Sbjct: 402 EV 403
>gi|60681287|ref|YP_211431.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
gi|60492721|emb|CAH07494.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
Length = 431
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 84/310 (27%), Positives = 140/310 (45%), Gaps = 32/310 (10%)
Query: 31 KNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMPTPEQIKKAFNALHKPVSEEP 90
+NG + A+EIN L E + + + R E+ T E+++ AF L V E
Sbjct: 53 ENGKAKGKSAEANEINGQLKEVSARLTNHYHRILREEDFVTAEKLRNAF--LGVGVMEN- 109
Query: 91 KPKKEALPYDFFQV---FDDFVEDCGRQNNWTDSTFEKFAAVKNHLTNF------REGLT 141
+ DF + F VE R ST+ K+ AV NH F R +
Sbjct: 110 -----CILKDFGNMNREFGAMVEKGQR----AKSTYNKYLAVYNHFKTFLWEKKKRTDMA 160
Query: 142 FEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLK 201
++ + + D+ YLR K + T+ L A+++G+ + + + Y +++
Sbjct: 161 YKELTKEIIADFDKYLRVEKGLSANTLWIYTMPLLSLTDKAWRRGIVRTDPFGEYSLEMQ 220
Query: 202 STQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIK-- 259
T + +LT +EL L + +L VRD+FLF CFTGL Y D+ L I+
Sbjct: 221 ETDRG--YLTEEELRTLANAVFVKKQTSL--VRDMFLFGCFTGLSYIDIKTLTHDKIQRM 276
Query: 260 ----DDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKEL 315
++ I KT S + L +K ++++YK +A D V P+ +N N +LK++
Sbjct: 277 DFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYKGLA-GGDLVFPIPSNSVCNRHLKQI 335
Query: 316 AELAGIDEPI 325
A+ GI + I
Sbjct: 336 AKACGIHKEI 345
>gi|153807337|ref|ZP_01960005.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
gi|149129699|gb|EDM20911.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
Length = 410
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 79/278 (28%), Positives = 124/278 (44%), Gaps = 38/278 (13%)
Query: 122 TFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
TF+++ V HL F RE + + + +ND+ +LR K R T+ + L
Sbjct: 132 TFQRYITVCKHLHEFIPYTYKREDIPLKELNLTFINDFEYFLRTEKRCRTNTVWGYMIVL 191
Query: 176 KWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRD 235
K + A G N + Y +S + +LT E+ L + P E VRD
Sbjct: 192 KHIVAIARNDGRLPFNPFAGYINSPESVDRG--YLTKSEIQTLMD--APMKNAYHELVRD 247
Query: 236 VFLFQCFTGLRYSDVFNLRRSDIK---DDHIEVTT--VKTSDSLIIELNNHSKAILDKYK 290
+F+F FTGL YSDV NL +++ D ++ + T KT+ I L + + I++KY+
Sbjct: 248 MFVFSVFTGLAYSDVKNLTTDNLQTFFDGNLWIITRRKKTNTESNIRLLDVPRKIIEKYR 307
Query: 291 DVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHA 350
+A D+KV P+ +N N LKE+ RQ +K L TH
Sbjct: 308 GLA-RDNKVFPMPSNTTCNKILKEIG---------RQCGFKTR------------LSTHV 345
Query: 351 GRRTFICNA-LALGIPPQVVMKWTGHSDYKAMKPYIDI 387
R T L+ G+P + V + GH++ K + Y I
Sbjct: 346 ARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKI 383
>gi|156859706|gb|EDO53137.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492]
Length = 431
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 83/310 (26%), Positives = 140/310 (45%), Gaps = 32/310 (10%)
Query: 31 KNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMPTPEQIKKAFNALHKPVSEEP 90
+NG + A+EIN L E + + + R E+ T E+++ AF L V E
Sbjct: 53 ENGKAKGKSAEANEINGQLKEVSARLTNHYHRILREEDFVTAEKLRNAF--LGVGVMEN- 109
Query: 91 KPKKEALPYDFFQV---FDDFVEDCGRQNNWTDSTFEKFAAVKNHLTNF------REGLT 141
+ DF + F VE R ST+ K+ AV NH F R +
Sbjct: 110 -----CILKDFGNMNREFGAMVEKGQR----AKSTYNKYLAVYNHFKTFLWEKKKRTDMA 160
Query: 142 FEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLK 201
++ + + D+ YLR K + T+ L A+++G+ + + + Y +++
Sbjct: 161 YKELTKEIITDFDKYLRVEKGLSANTLWIYTMPLLSLTDKAWRRGIVRTDPFGEYSLEMQ 220
Query: 202 STQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIK-- 259
T + +LT +EL L + +L VRD+FLF CFTGL Y D+ L I+
Sbjct: 221 ETDRG--YLTEEELRTLANAVFVKKQTSL--VRDMFLFGCFTGLSYIDIKTLTHDKIQRM 276
Query: 260 ----DDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKEL 315
++ I KT S + L +K ++++Y+ +A D V P+ +N N +LK++
Sbjct: 277 DFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYRGLA-GGDLVFPMPSNSVCNTHLKQI 335
Query: 316 AELAGIDEPI 325
A+ GI + I
Sbjct: 336 AKACGIHKEI 345
>gi|153809551|ref|ZP_01962219.1| hypothetical protein BACCAC_03869 [Bacteroides caccae ATCC 43185]
gi|149127796|gb|EDM19020.1| hypothetical protein BACCAC_03869 [Bacteroides caccae ATCC 43185]
Length = 443
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 95/389 (24%), Positives = 163/389 (41%), Gaps = 47/389 (12%)
Query: 11 EFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRF-EVEDVM 69
+F ++I+ W+A QR C+ K K A+ N + +Q F +++DV+
Sbjct: 39 QFACKFKINVRLWNATAQR----CTGKSK-VATMANREIERVLLLLQKRFNELSDMQDVV 93
Query: 70 PTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAV 129
T E+++ F + K E +V + Q T +F
Sbjct: 94 -TAEEVRNVFQGQAETQDTIMKLYAEHNSDYALRVGVNRAASTFYQYRNTCRILGEFLKE 152
Query: 130 KNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQ 189
+ H+++ + + DE + + Y+R + TI ++ LK + A +G+
Sbjct: 153 RYHVSD----MPVKQLDENFIEAFDMYMRTTRRFMPRTILGHINRLKSVMMLAVFRGIIP 208
Query: 190 NNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSD 249
+ + Y P+ K K++ +LT DEL+R + + RD+FLF C+TG+ Y D
Sbjct: 209 FSPFKGYAPQ-KPVFKQM-YLTEDELDRFANTTYDTPNRNF--TRDMFLFSCWTGICYCD 264
Query: 250 V-----FNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVIT 304
+ NL R+D I KT + L I++KYK + + K+LP++T
Sbjct: 265 MRSLTAANLVRADDGSLWIHTERQKTGTPECVRLMEIPLKIVEKYKGMD-SNGKLLPMLT 323
Query: 305 NQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTF---ICNALA 361
+ MN +LK+++ + GI+ PI H R TF IC L+
Sbjct: 324 KESMNRHLKKMSVMCGINRPI---------------------SFHQARHTFGSIIC--LS 360
Query: 362 LGIPPQVVMKWTGHSDYKAMKPYIDIADD 390
GIP + V K GH + Y + D
Sbjct: 361 QGIPIETVSKIMGHRHITTTQRYAKVTQD 389
>gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides distasonis ATCC 8503]
gi|149935577|gb|ABR42274.1| integrase [Parabacteroides distasonis ATCC 8503]
Length = 392
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 94/386 (24%), Positives = 165/386 (42%), Gaps = 55/386 (14%)
Query: 12 FTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMPT 71
F+T + +WD ++ +KN + +N L Y E++ R E+E
Sbjct: 37 FSTKVYVKPCQWDNKRRSIKN------HPNMDALNLYLQNYVMELE----RDELEK---- 82
Query: 72 PEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVKN 131
Q F+ ++EA F F+ + +N +ST + + +
Sbjct: 83 -RQANNGFSL--------KDLREEASSTSTSSSFLVFMREEILHSNLKESTLKNHLSTLH 133
Query: 132 HLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNN 191
L+ +++ + F+ + L D+ +L + RNT I K + LK ++ A K + + +
Sbjct: 134 VLSLYKKDVLFKDINFNFLCDFEYFLLKQEYHRNT-IAKHMKHLKRYINLAINKELFELH 192
Query: 192 AYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVF 251
Y K K+K + K LT +EL RL K+ ++ L R D+FLF C+TGLR+SD+
Sbjct: 193 KYPFRKYKIKYQESKRTHLTPEELGRLENLKL-DGQRTLRRCLDMFLFSCYTGLRFSDIV 251
Query: 252 NLRRSD--IKDDHIEV--TTVKTSDS----LIIELNNHSKAILDKYKDVAFEDDKVLPVI 303
++ + + I DD + + ++VKT S L + S I ++YK+ V P+
Sbjct: 252 SITKENFLIIDDKVWLVYSSVKTDVSVRLPLFLLFEGKSLPIYERYKNAPRTLFGV-PLS 310
Query: 304 TNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALG 363
+N +N L+ +++LA ID+ + H R T L G
Sbjct: 311 SNSNVNKQLRRISQLASIDKKV---------------------SFHTARHTNATLLLYNG 349
Query: 364 IPPQVVMKWTGHSDYKAMKPYIDIAD 389
V K GH + + Y +I D
Sbjct: 350 ANITTVQKLLGHKSVRTTEIYSNIMD 375
>gi|150007906|ref|YP_001302649.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
gi|149936330|gb|ABR43027.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
Length = 359
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 88/355 (24%), Positives = 156/355 (43%), Gaps = 45/355 (12%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
MR+ +R E +D +KW++ K+ C+ ++ + E+N L ++ I
Sbjct: 29 MRITVNGQRAEIQIKRSVDISKWNSQKE-----CAIGKERKSMELNHYLDTVRMKVLQIH 83
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDD----FVEDCGRQN 116
+ E + T + +K+ + E PK +VF + + E G+
Sbjct: 84 RELEQDGKPITADVLKRRY------YGEGDSPKM------LLEVFREHNRKYRELMGK-- 129
Query: 117 NWTDSTFEKFAAVKNHLTNFRE------GLTFEFFDERGLNDYVGYLRDVKEMRNTTIGK 170
++ T ++ +L + + + + + + Y++ K K
Sbjct: 130 DYVAGTVLRYERTAKYLGELLQKEYRINDIPLKEINHEFIARFEHYIKTEKSCAQNATVK 189
Query: 171 QLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQ 228
L K ++ A N+ + + K T+ FLT +ELN L +EF IP
Sbjct: 190 YLKNFKKIIKMALVNKWITNDPF--LEIHFKQTKTNRAFLTEEELNILLKKEFTIPR--- 244
Query: 229 ALERVRDVFLFQCFTGLRYSDVFNLRRSDIKDD-----HIEVTTVKTSDSLIIELNNHSK 283
L+ VRD+F+F TGL ++DV +LR I D I KT + I L + +
Sbjct: 245 -LQTVRDIFVFCALTGLAFTDVQHLRYEHIIKDVNGEYWIRKAREKTDNMCDIPLLDIPR 303
Query: 284 AILDKYKD--VAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERI 336
IL+KYK + VLPV +NQ+MN YLKE+A++ GI++P+ T+ + + +I
Sbjct: 304 MILEKYKTHPECLKKGVVLPVPSNQRMNSYLKEIADICGINKPL-STHVRKHSKI 357
>gi|154491554|ref|ZP_02031180.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
43184]
gi|154088355|gb|EDN87400.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
43184]
Length = 411
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 104/414 (25%), Positives = 165/414 (39%), Gaps = 73/414 (17%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
MR+ R+E I+ A W+ K+ C+ + + ++NA + E ++ F
Sbjct: 27 MRITVNGARVENNIRKSIEPALWNQAKE-----CAKGKSRKSCDLNAYIEEARIKLHQTF 81
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKP----------VSEEPKPKKEALPYDFFQVFDDFVE 110
E + T +++ F K + E +E + D+ + E
Sbjct: 82 NELEEQGQFITARLLQEKFFGQDKASEAIRTLIGTMQEHNDQCRELVGKDYALITVRRYE 141
Query: 111 DCGRQNNWTDSTFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGK 170
C R + A L +E L + + + YL+ KE + T+ +
Sbjct: 142 SCKR-----------YLAELIKLKYGKEDLPLSEVNGELVRSFEFYLKTEKECQQNTVIR 190
Query: 171 QLSFLKWFLRWAFKKGVHQNNAYDSYKP--KLKSTQKKII--FLTWDELNRLREFKIPSN 226
+ LK A N + + P +K +K++I FLT DEL I
Sbjct: 191 YMKCLKKITNLALA------NEWITKDPFIGIKFHEKEVIREFLTMDEL-----LTIYHK 239
Query: 227 KQALER---VRDVFLFQCFTGLRYSDVFNLRRSDIKDDH-----IEVTTVKTSDSLIIEL 278
+ +LER VRDVF F FTGL + DV L I +D I KT + I L
Sbjct: 240 EFSLERITIVRDVFTFAAFTGLAFIDVQQLAPEHIVEDSNGNLWIRKPRQKTKNMCNIPL 299
Query: 279 NNHSKAILDKYKD--VAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERI 336
+ IL KY + + +++LPV NQKMN YLKE+A+L I++
Sbjct: 300 LDIPLEILRKYAEHPACQKKNRLLPVPCNQKMNSYLKEIADLCMINKT------------ 347
Query: 337 DDVTPKYALLGTHAGRRTFICNA-LALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
L TH R ++ + LA G+ + V K GHS+ K + Y + D
Sbjct: 348 ---------LTTHVARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARVLD 392
>gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
gi|149128488|gb|EDM19706.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
Length = 397
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 97/390 (24%), Positives = 162/390 (41%), Gaps = 55/390 (14%)
Query: 8 KRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVED 67
++I F+T + +WD ++ VK +A +N L E+ I+ I +
Sbjct: 33 RKIYFSTKIYLKPEQWDTKRRMVKG------HPNADVLNRMLYEHIAAIEQIELGLWQQG 86
Query: 68 VMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFA 127
+ E +K +++ KPVS + L + +V + +++ RQN+ ST E
Sbjct: 87 KSISLELLK---DSIDKPVSN----GRSFLTFFREEVANSSLKESTRQNHL--STLELLQ 137
Query: 128 AVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGV 187
K + F + LTFEF ++ + YL+ K TI K + LK ++ A K
Sbjct: 138 EFKKEV-QFTD-LTFEF-----VSSFDNYLQS-KGYHLNTIAKHMKHLKRYVNVAINKDY 189
Query: 188 HQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRY 247
Y K K+KS + + L+ +EL++L + ++ L++ +D FLF C+ GLRY
Sbjct: 190 MDVQKYAFRKYKIKSVEGRHSHLSPEELHKLEDLQLGGKYAKLQKTKDSFLFCCYAGLRY 249
Query: 248 SDVFNLRRSDIKDDHIEV--------TTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKV 299
SD NL ++I + E T ++ L + IL +YKD + ++
Sbjct: 250 SDFTNLTSANIVEFQQETWLIYKSVKTGIEVRLPLYLLFEGKGIHILQRYKD---DLNRF 306
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
+ N +N L L +LA ID+ I H R T
Sbjct: 307 FKLKDNSNINKELNILGKLAEIDKRI---------------------SFHTARHTNATLL 345
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
+ G V K GH K + Y +I D
Sbjct: 346 IYSGANITTVQKLLGHKSVKTTQVYANIMD 375
>gi|154495261|ref|ZP_02034266.1| hypothetical protein PARMER_04317 [Parabacteroides merdae ATCC
43184]
gi|154085185|gb|EDN84230.1| hypothetical protein PARMER_04317 [Parabacteroides merdae ATCC
43184]
Length = 359
Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 54/135 (40%), Positives = 76/135 (56%), Gaps = 13/135 (9%)
Query: 200 LKSTQKKIIFLTWDELNRL--REFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSD 257
K T+ FLT +ELN L +EF IP L+ VRD+F+F TGL ++DV +LR
Sbjct: 217 FKQTKTNRAFLTEEELNILLKKEFTIPR----LQTVRDIFVFCALTGLAFTDVQHLRYEH 272
Query: 258 IKDD-----HIEVTTVKTSDSLIIELNNHSKAILDKYKD--VAFEDDKVLPVITNQKMND 310
I D I KT + I L + + IL+KYK + VLPV +NQ+MN
Sbjct: 273 IIKDVNGEYWIRKAREKTDNMCDIPLLDIPRMILEKYKTHPECLKKGVVLPVPSNQRMNS 332
Query: 311 YLKELAELAGIDEPI 325
YLKE+A++ GI++P+
Sbjct: 333 YLKEIADICGINKPL 347
>gi|156859929|gb|EDO53360.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
Length = 411
Score = 75.5 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 100/419 (23%), Positives = 166/419 (39%), Gaps = 60/419 (14%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ + +F+ ID WD RV + +A E N L + I ++
Sbjct: 27 RITVDGSQTQFSCKLTIDPKLWDTKGGRVTGRST-----AALETNRMLDKMRVRINKHYQ 81
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQ---NNW 118
D T E++K AF L E + QVF ED +Q
Sbjct: 82 EIMERDNFVTAEKVKNAFLGL------------EHRYHTLMQVFQQHNEDYAKQVEAGMK 129
Query: 119 TDSTFEKFAAVKNHLTNFR------EGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQL 172
T K+ V HL F + + + ++D+ +LR K T+ +
Sbjct: 130 AKGTLLKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTDKHCCTNTVWLYV 189
Query: 173 SFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALER 232
L+ + A + + Y+ K + T + FLT DE+ L E K+ + KQ L
Sbjct: 190 CPLRTMVFIAINNEWLTRDPFREYEIKKEETTRS--FLTKDEIRLLMEGKLKNAKQEL-- 245
Query: 233 VRDVFLFQCFTGLRYSDVFNLRRSDIK---DDH--IEVTTVKTSDSLIIELNNHSKAILD 287
RD++LF FTGL ++D+ NL +I+ D+H I + KT I L + +K I+D
Sbjct: 246 YRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIAKQIID 305
Query: 288 KYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
KY+ + E+ ++ PV ++ +A+ GI + I T+++
Sbjct: 306 KYRGLC-ENGRIFPVPHYNTCLAGIRAVAKRCGITKHI--TWHQSRHT------------ 350
Query: 348 THAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDI----KANAMSKFNQL 402
A F+ N G+P + V GH K + Y I + N ++ NQ+
Sbjct: 351 --AATTVFLSN----GVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAARLNQI 403
>gi|60681325|ref|YP_211469.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
gi|60492759|emb|CAH07532.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
Length = 410
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 95/413 (23%), Positives = 180/413 (43%), Gaps = 55/413 (13%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
RV K +F+ ++ W+ + R+ + A E N L + I ++
Sbjct: 27 RVTVNGKVSQFSCKLDVEEKSWNVELGRLSGRST-----VAQEGNWILDKIRVGINKTYQ 81
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDS 121
D T E+++ AF + K E L F Q +D+ + G+ ++
Sbjct: 82 EICDRDNYVTAEKVRNAFLGMGM--------KHETLLAVFAQHNEDYAKQVGKIK--SER 131
Query: 122 TFEKFAAVKNHLTNFRE------GLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
++ K+ V NHL+ F + + + + D+ +LR K+ T+ + L
Sbjct: 132 SYWKYCTVYNHLSEFIKQRYKVSDIALKELTPAFITDFELFLRTEKDHCTNTVWSYMMPL 191
Query: 176 KWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQALERV 233
+ + A G Q + + Y + T++ FLT +E+ L FK K++ E +
Sbjct: 192 RRIIYMAINNGWLQRDPFYGYSITKEETKRG--FLTKEEITLLINGTFK----KKSYELI 245
Query: 234 RDVFLFQCFTGLRYSDVFNLRRSDIK---DDHIEVTT--VKTSDSLIIELNNHSKAILDK 288
RD+F+F FTGL ++D+ NL + +++ D H+ + T KT I L ++ I++K
Sbjct: 246 RDLFIFCTFTGLSWTDMANLMKENLEISFDGHLWIKTKRQKTGTESNIRLLEVARHIIEK 305
Query: 289 YKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGT 348
Y+ +A +D K+LPV + +K +A+ GID+ + T+++ YA
Sbjct: 306 YEGMA-KDGKLLPVPCYPNCKNGIKVIAKHCGIDKNV--TWHQSRH-------SYA---- 351
Query: 349 HAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQ 401
T +C L+ +P + + K GH + + Y I + + M K ++
Sbjct: 352 -----TTVC--LSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEKLSK 397
>gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483]
Length = 390
Score = 75.1 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 102/404 (25%), Positives = 165/404 (40%), Gaps = 60/404 (14%)
Query: 8 KRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVED 67
K++ F+T + +WDA ++ VKN +A+ +N L E I+ +
Sbjct: 33 KKMYFSTKIYLKPEQWDAKRKMVKN------HPNANVLNRMLYENIAAIEQTELGLWQQG 86
Query: 68 VMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFA 127
+ + +K N++ KP+S + L + ++ + +++ RQN+ ST E
Sbjct: 87 KSISLDLLK---NSIDKPLSN----GRSFLTFFKEEIANSSLKESTRQNHL--STLELLQ 137
Query: 128 AVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGV 187
K + LTFEF ++ + YL+ K TI K + LK ++ A K
Sbjct: 138 EFKKEV--LFTDLTFEF-----VSSFDNYLQS-KGYHLNTIAKHMKHLKRYINVAINKEY 189
Query: 188 HQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRY 247
Y K K+KS + L +EL++ ++ L++ +D FLF C+ GLRY
Sbjct: 190 MDIQKYAFRKYKIKSIEGSHTHLAPEELHKFENLQLTGRYTRLQKTKDAFLFCCYAGLRY 249
Query: 248 SDVFNLRRSDIKDDHIEV----TTVKTSDSLIIEL----NNHSKAILDKYKDVAFEDDKV 299
SD NL ++I + H E +VKT + + L IL +YKD + +
Sbjct: 250 SDFTNLTSANIVEFHQETWIIYKSVKTGMEVRLPLYLLFEGKGIQILQRYKD---DFNSF 306
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
+ N +N L LA LA ID+ + H R T
Sbjct: 307 FKLKDNSNINKELNILAGLAKIDKRV---------------------SFHTARHTNATLL 345
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPYIDIAD-----DIKANAMSK 398
L G V K GH K + Y +I D D++ A SK
Sbjct: 346 LYNGANITTVQKLLGHKSVKTTQVYANIMDITVVRDLEKTASSK 389
>gi|120436834|ref|YP_862520.1| phage integrase family protein [Gramella forsetii KT0803]
gi|117578984|emb|CAL67453.1| phage integrase family protein [Gramella forsetii KT0803]
Length = 418
Score = 75.1 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 107/419 (25%), Positives = 185/419 (44%), Gaps = 68/419 (16%)
Query: 13 TTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK-RFEVEDV-MP 70
+TG +I + WD +KQ+VK+ K S + + E +IQ F+ + + ED+ +P
Sbjct: 33 STGEQIPADAWDTNKQKVKD------KVSTFAYSGKINERLEKIQKHFEEKVKGEDISIP 86
Query: 71 TPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNN------WTDSTFE 124
E++ + + K +S F + +++ E NN +++ T +
Sbjct: 87 FLEKLWLSIDD-RKGIS-------------FLEFCNNYYEWAKVNNNPRTKKPYSEGTLK 132
Query: 125 KFAAVKNHLTNFREG---LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRW 181
K+ N L F + + F+ D+ +++ Y K + + TIG L +K F +
Sbjct: 133 KYNGAINKLKEFTQNKFQVNFKNLDQHFHTEFIKYFEG-KGLADNTIGTDLKNIKVFAKA 191
Query: 182 AFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQC 241
A K+ NN S + L + + ++ E+ R+ +F IP L R+ F+ C
Sbjct: 192 ASKEH-PVNNFILSDEFYLPNNETISVYCDESEIQRIYDF-IPEKDYQLN-ARNWFIIGC 248
Query: 242 FTGLRYSDVFNLRRSDIKDDHIEVTTVKTSDS----LIIELNNHSKAILDKYKDVAFEDD 297
+TGLR SD R +IK+D+I + KT ++ ++I ++ K I+ +Y
Sbjct: 249 WTGLRISDWH--RVKEIKEDYITIKPEKTKNTSGKTVVIPVHWQIKEIIKEYG------- 299
Query: 298 KVLP-VITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVT-------------PKY 343
+P I +Q N Y+KE+ E AG TY E I + PK+
Sbjct: 300 --MPRKIKSQNFNVYIKEVFEEAGFKN---FTYGSKMESIGKDSKDHDIMRKKVGNFPKW 354
Query: 344 ALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANA-MSKFNQ 401
L+ +H RR+F N +GI +M TGH+ K YI + A M K+N+
Sbjct: 355 QLISSHTCRRSFATNNYLMGIDSLTIMNVTGHTSEKNFLKYIRVTPKQHAERLMEKWNK 413
>gi|126661716|ref|ZP_01732715.1| tyrosine type site-specific recombinase [Flavobacteria bacterium
BAL38]
gi|126625095|gb|EAZ95784.1| tyrosine type site-specific recombinase [Flavobacteria bacterium
BAL38]
Length = 408
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 74/251 (29%), Positives = 114/251 (45%), Gaps = 41/251 (16%)
Query: 150 LNDYVGYLRDVKE---MRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKK 206
L Y+ + D K ++N ++ K LK +A + + N ++ Y K+K +
Sbjct: 170 LESYLKFESDYKGKTGIKNNSVVKYFKNLKTICNYAIRMELIDKNPFNIYNGKIKVEEAT 229
Query: 207 IIFLTWDELNRL--REFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKDDH-- 262
FLT +EL + + FKI LERV+D+FLF C+TG D L R +I D
Sbjct: 230 --FLTQEELESIENKTFKI----DRLERVKDIFLFSCYTGYAPVDAIKLTRKNIIQDTEK 283
Query: 263 ---IEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELA 319
I+ KT+ + + I++KY+ F D +LP I+NQKMN YLKE+A++
Sbjct: 284 TLWIKANRQKTNTKANVPILPPVLKIINKYQ---FYGDTLLPKISNQKMNAYLKEIADII 340
Query: 320 GIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICN-ALALGIPPQVVMKWTGHSDY 378
G+++ + T+Y R TF L GI + V GH+
Sbjct: 341 GLEKKL--TWY-------------------VARHTFATTVTLGNGIRIENVSAMLGHTTI 379
Query: 379 KAMKPYIDIAD 389
K + Y I D
Sbjct: 380 KQTQHYAKILD 390
>gi|29348544|ref|NP_812047.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29340449|gb|AAO78241.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 410
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 147/353 (41%), Gaps = 59/353 (16%)
Query: 75 IKKAFNAL-HKPVSEEPKPKKEALP------YDFFQVFDDFVE--------DCGRQNNWT 119
I+KAF+ L K E K KEAL D+ + D + + WT
Sbjct: 77 IQKAFDVLVEKRTDFEAKDVKEALQGSVKTQTTLLSFVDEHISELSTHEGIDMSKSSVWT 136
Query: 120 DSTFEK----FAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
K F K LT+ L F E ++D+ YL D K + TI +S
Sbjct: 137 YRKIRKNLAEFIGEKYRLTD----LAFGQLTEPFISDFHHYLLDEKGFSSGTITIYVSLF 192
Query: 176 KWFLRWAFKKGVHQNNAYDSYK---PKLKSTQKKIIFLTWDELNRLREFKIPSNKQALER 232
K R AF++G+ +N + Y+ PK+ + + L+ + ++R+ ++P +K L
Sbjct: 193 KKMCRIAFERGLCKNLLFAHYRVGTPKVMTPKA----LSMSDFIKIRDVELPEDKPRLSV 248
Query: 233 VRDVFLFQCFTGLRYSDVFNLRRSDIK-----DDHIEVTTVKTSDSLIIELNNHSKAILD 287
RD+FLF C+ G + D ++ ++++K D + KT ++L + ++
Sbjct: 249 SRDLFLFACYAGTAFIDTVSITKANVKVLEDGDKWLVYNRKKTGTLARVKLLPEALELMA 308
Query: 288 KYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
KY+D A D + P+++ ++ L + +LA +TY
Sbjct: 309 KYEDEA--RDTLFPLLSTNRVRIDLITICKLA----ETSKTY-----------------S 345
Query: 348 THAGRRTFIC-NALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
H+GR +F L G+P + + K GH D K + Y + M KF
Sbjct: 346 YHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVTQKKLFEDMDKF 398
>gi|53713278|ref|YP_099270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52216143|dbj|BAD48736.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 409
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 91/400 (22%), Positives = 166/400 (41%), Gaps = 51/400 (12%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ ++F+ + + WD R + A+E+N L + I S +K
Sbjct: 29 RITIGKSMVQFSAKCSVQVSLWDTKSARATGK-----SKVAAELNRILDQTTLSIHSHYK 83
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDS 121
+ + E++K AF + VS + YD V N T
Sbjct: 84 DLLAKKEKVSAEEVKNAFQGI---VSGQETLIGYCDKYDKMLAARIGV-------NMTLE 133
Query: 122 TFEKFAAVKNHLTNFREG------LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
+++++ NH+ F ++F+ D + + YLR + + TI + L
Sbjct: 134 SYKRYGISFNHVKRFLRAKYNLSDISFQALDYSFIEAFDFYLRVQLKFKPNTIIGIVGHL 193
Query: 176 KWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRD 235
K ++ A G+ N + + + + Q K I T ELN++ + S + L VRD
Sbjct: 194 KIIVKRAANDGIITRNPFIGFSLEGEPLQPKSI--TGQELNKIMTTPLDSPNRYL--VRD 249
Query: 236 VFLFQCFTGLRYSDVFNLRRSDIKDDH-----IEVTTVKTSDSLIIELNNHSKAILDKYK 290
+FLF FTG+ +SD+ NL +++ I KT + L I++KY+
Sbjct: 250 MFLFSVFTGIAFSDIRNLTCNNLVQAEDGVWWIHSKRRKTGTEFHVPLLELPLQIIEKYR 309
Query: 291 DVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHA 350
+ +D K+ +++ K N LK++A++ GI I T++ YA L T
Sbjct: 310 GLN-KDGKMFVMLSCSKTNGNLKKIAKICGIKRNI--TFHMARH-------SYASLIT-- 357
Query: 351 GRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADD 390
L+ G+P + V + GH D +A + Y ++++
Sbjct: 358 ---------LSQGVPMETVSRMLGHRDLRATRIYAQVSNE 388
>gi|154492804|ref|ZP_02032430.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
43184]
gi|154087109|gb|EDN86154.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
43184]
Length = 310
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 76/290 (26%), Positives = 125/290 (43%), Gaps = 38/290 (13%)
Query: 116 NNWTDSTFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
N +D + F + LT +FFD DY +L+ + TI K L +L
Sbjct: 50 NRISDKQLDAFVRSRGEEDILLTALTMDFFD-----DYRFHLKK-EGYAPATINKHLCWL 103
Query: 176 KWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRD 235
+ A +G + N ++ + K ++ ++K FL+ ++ +L F P + E R
Sbjct: 104 SRLMYRAVSQGTIRFNPFE--EAKYEAVERKPRFLSKGDVAKLLAF--PLQDEGAELSRR 159
Query: 236 VFLFQCFTGLRYSDVFNLRRSDIKDD-----HIEVTTVKTSDSLIIELNNHSKAILDKY- 289
+FLF FTGL ++D+ +LR S I+ + +I KT +I L+ ++ IL Y
Sbjct: 160 MFLFSVFTGLAFADLQSLRVSQIEKNNEGKRYIRKARQKTEVESLIPLHPIAEQILSLYT 219
Query: 290 KDVAFEDDKVLP-VITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGT 348
K+ + D K+ P ++ K+ +LK + GI P L
Sbjct: 220 KEESKGDYKIFPDTMSKGKLLTHLKAVGWACGIRTP---------------------LTW 258
Query: 349 HAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSK 398
H GR +F L GIP + + K GHS + + Y I D A M +
Sbjct: 259 HVGRHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKIARDMER 308
>gi|150006208|ref|YP_001300952.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
gi|149934632|gb|ABR41330.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
Length = 483
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 96/403 (23%), Positives = 161/403 (39%), Gaps = 56/403 (13%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ + +F+ + WD RV + +A E N L + I ++
Sbjct: 99 RITVDGSQTQFSCKLTVYPKLWDTKGGRVTGRST-----AALEANRLLDKMRVRINRHYQ 153
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQ---NNW 118
D T E++K AF L E + QVF ED +Q
Sbjct: 154 EIMERDNYVTAEKVKNAFLGL------------EHRYHTLMQVFSRHNEDYEKQVEAGMK 201
Query: 119 TDSTFEKFAAVKNHLTNFR------EGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQL 172
T K+ V HL F + + + ++D+ +LR K T+ +
Sbjct: 202 AKGTLAKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTDKHCCTNTVWLYV 261
Query: 173 SFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALER 232
L+ + A ++ + Y+ K + T + FLT DE+ L + K+ + KQ L
Sbjct: 262 CPLRTMVFIAINNEWLTHDPFREYEIKKEETTRS--FLTKDEIRLLMDGKLKNAKQEL-- 317
Query: 233 VRDVFLFQCFTGLRYSDVFNLRRSDIK---DDH--IEVTTVKTSDSLIIELNNHSKAILD 287
RD++LF FTGL ++D+ NL +I+ DDH I ++ KT I L + +K I+D
Sbjct: 318 YRDLYLFCAFTGLSFADMRNLTEENIRTYFDDHEWINISRQKTGVVSNIRLLDIAKRIID 377
Query: 288 KYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
KY+ + ED ++ PV ++ +A+ GI + I T+++
Sbjct: 378 KYRGLC-EDGRIFPVPHYMTCLHGIRAVAKRCGITKHI--TWHQSRHT------------ 422
Query: 348 THAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADD 390
A F+ N G+P + V GH K + Y I +
Sbjct: 423 --AATTVFLSN----GVPIETVSSMLGHKSIKTTQIYAKITKE 459
>gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
gi|29339578|gb|AAO77374.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
Length = 396
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 96/405 (23%), Positives = 165/405 (40%), Gaps = 60/405 (14%)
Query: 8 KRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVED 67
+++ F+T + +WD ++ VKN ++ +N L ++ +I E ++
Sbjct: 33 RKMYFSTRVYLKPDQWDVKRRMVKN------HPNSDALNRMLYDFIADI-------EQKE 79
Query: 68 VMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFA 127
+ ++ + ++L + + L + +V + +++ RQN+ ST E
Sbjct: 80 LGLWQQRRSISLDSLKDSIEKPENNGNSFLTFFKEEVSNSSLKESTRQNHL--STLELLQ 137
Query: 128 AVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGV 187
K + F + LTFEF ++ + YL+ K TI K + LK ++ A K
Sbjct: 138 EYKKDIV-FTD-LTFEF-----VSSFDNYLQS-KGYHLNTIAKHMKHLKRYVNVAINKEY 189
Query: 188 HQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRY 247
Y K K+KS + L+ +ELN++ E + L++ +D FLF C+ GLRY
Sbjct: 190 MDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTKLQKSKDAFLFCCYAGLRY 249
Query: 248 SDVFNLRRSDIKDDHIEV--------TTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKV 299
SD NL ++I + H E T + L + +L+ YKD + +
Sbjct: 250 SDFINLTAANIVELHQETWLIYKSVKTGIDVRLPLYLLFEGKGLRVLETYKD---DLNGF 306
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
+ N +N L LA+LA ID+ I H R T
Sbjct: 307 FKLKDNSNVNKDLNALAKLAEIDKRI---------------------SFHTARHTNATLL 345
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPYIDIAD-----DIKANAMSKF 399
+ G V K GH K + Y +I D D++ A SK
Sbjct: 346 IYSGANITTVQKLLGHKSVKTTQVYANIMDMTIVHDLEKAAYSKL 390
>gi|154495043|ref|ZP_02034048.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
43184]
gi|154085593|gb|EDN84638.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
43184]
Length = 392
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 77/279 (27%), Positives = 120/279 (43%), Gaps = 37/279 (13%)
Query: 125 KFAAVKNHLTNFREGLTFE---FFDERGLNDYVGY---LRDVKEMRNTTIGKQLSFLKWF 178
+ + +KNHL+ + ++ FD+ N G+ L + K RNT I K + LK +
Sbjct: 124 RLSTLKNHLSTLQVLCQYQPQVSFDDLTFNFLCGFEHFLLEQKYHRNT-IAKHMKHLKRY 182
Query: 179 LRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFL 238
+ A K + + Y K K+K + K LT +EL RL P ++ L R D+FL
Sbjct: 183 VNLAINKDLFELQKYPFRKYKIKYMESKRGHLTPEELGRLENIA-PKLQRTLRRTLDMFL 241
Query: 239 FQCFTGLRYSDVFNLRRSDIK--DDHIEV--TTVKTSDS----LIIELNNHSKAILDKYK 290
F C+TGLR+SD+ N+R + DD + + ++VKT + L + + + A+ ++Y
Sbjct: 242 FSCYTGLRFSDIVNIRPDNFHLIDDKLWLVYSSVKTDVNVRLPLFLLFDGKALAVYERYC 301
Query: 291 DVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHA 350
+ V N +N LK + LA ID+ L H
Sbjct: 302 KRYSRTLFGVSVSANSNVNKQLKRICRLAEIDKR---------------------LSFHM 340
Query: 351 GRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
R T L G V K GH + + Y DI D
Sbjct: 341 ARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDIMD 379
>gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
Length = 409
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 91/411 (22%), Positives = 169/411 (41%), Gaps = 53/411 (12%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ ++F+ W+A + R+ NG S + ++ +I LL ++ S+ +
Sbjct: 28 RITLNRTMVQFSCKLSCTPGLWNARESRL-NGKSREAVETNEKIERLLLAVHSAFNSLME 86
Query: 62 RFE------VEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQ 115
R + V D+ ++ L +EE K + V D
Sbjct: 87 RKKDFDAAAVRDMFQGNAGMQMTLLKLLDRHNEEMKTR----------VGVDRAPTTMST 136
Query: 116 NNWTDSTFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
+T T +F + +++ L F +E+ + DY + + K + T+ LS L
Sbjct: 137 YVYTRRTLAEFIKTEFKVSD----LAFGQLNEQFIRDYQDFCLEKKRLAMETVRHYLSIL 192
Query: 176 KWFLRWAFKKGVHQNNAYDSYK-PKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVR 234
K R A+K+G + + +K PK K T K L+ + +LR+ +IP +++ R
Sbjct: 193 KKICRIAYKEGHSEKYHFCHFKLPKQKETTPKA--LSRENFEKLRDLEIPEKRRSHVITR 250
Query: 235 DVFLFQCFTGLRYSDVFNLRRSDI-KDDH----IEVTTVKTSDSLIIELNNHSKAILDKY 289
D+FLF C+TG Y+D ++ R ++ +DD ++ KT ++L + A+++KY
Sbjct: 251 DLFLFACYTGTAYADAVSITRENLFRDDEGSLWLKYRRKKTDYLGRVKLLPEALALIEKY 310
Query: 290 KDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTH 349
+D + P + +K L +AG+ + L H
Sbjct: 311 RDDT--RTTLFPPQDYHTLRANMKSLRLMAGLSQD---------------------LVYH 347
Query: 350 AGRRTFIC-NALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
GR +F L G+P + + K GHS+ K + Y + M +F
Sbjct: 348 MGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRF 398
>gi|150010080|ref|YP_001304823.1| integrase [Parabacteroides distasonis ATCC 8503]
gi|149938504|gb|ABR45201.1| integrase [Parabacteroides distasonis ATCC 8503]
Length = 402
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 91/409 (22%), Positives = 168/409 (41%), Gaps = 53/409 (12%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
RV +F+ I WDA R K G S K + ++N +L +I ++
Sbjct: 26 RVTINGTIAQFSCKQSISKELWDAKANRAK-GKSRK----SMDVNHALDNIKAQIAKHYQ 80
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDS 121
R + T E ++ A+ + + E + F ++ DF + G+ ++
Sbjct: 81 RLSDREAFVTAEMVRNAYQGI--------GTEYETVLRAFDKMNADFAKRVGKDR--SER 130
Query: 122 TFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
T+ K+ V+ ++ F R + E ++DY YLR+ + +++ L
Sbjct: 131 TYRKYLTVRKYVAEFMKNHYKRSDMGMNELTEEFIHDYCLYLRNEVGLAQSSVWIYSIPL 190
Query: 176 KWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRD 235
K + A G N + Y + K+ FLT +E+ + ++ + A+ RD
Sbjct: 191 KHIVTSAHYHGKIPRNPFAQYH--VNPDHKERGFLTENEIKAMSTIELENANFAI--ARD 246
Query: 236 VFLFQCFTGLRYSDVFNLRRSDIKDDH----IEVTTVKTSDSLIIELNNHSKAILDKYKD 291
+F+F C+TG+ + D+ NL +I + + I KT I+L + I+++ K
Sbjct: 247 IFIFGCWTGISFVDIKNLTTDNIVELNGSRWIVSKRQKTGVPFQIKLMDIPAQIIERNK- 305
Query: 292 VAFEDDKVLPVITNQKM-NDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHA 350
F + K L I + M N +K +A++ GI++ I H
Sbjct: 306 -PFRNGKNLFNINSYDMVNRRIKTVAKMCGIEKNI---------------------SFHL 343
Query: 351 GRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
R +F AL G+P + V K GH++ + Y + + N +S F
Sbjct: 344 SRHSFAVLALNYGMPIESVSKILGHTNITTTQIYAKVTNTKLENDISAF 392
>gi|29349417|ref|NP_812920.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29341326|gb|AAO79114.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 370
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 141/343 (41%), Gaps = 44/343 (12%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
RV + +R E T + S W A Q+ +N E+N + + I+
Sbjct: 29 RVTISGQRYEIPTKLHLRSESWSAVAQKSLGKTAND-----KEVNRYIEDLKITIEDTIA 83
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDS 121
+ + E K F +++ + + +D+ ++ + + N S
Sbjct: 84 KIRQKSYPLNIENFKLMFQ------TQDNEFSTISTLFDYHEIME--------KKNLRTS 129
Query: 122 TFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
TF + K HL NF D+ + ++ YL+ + +T + L
Sbjct: 130 TFIGYHVTKKHLLNFIRIKYHVSDYDLAAVDKAFVYEFYAYLQGYRREGDTVCAVNGA-L 188
Query: 176 KWFLRWAFKKGVHQNNAYDSYKP----KLKSTQKKIIFLTWDELNRLREFKIPSNKQALE 231
K R+ V N + S P K T+ + FL+ EL L E +P+N L
Sbjct: 189 KHIQRFKKVMNVALQNEWISRNPVCLLNAKKTKVERGFLSEKELKSLEEVPLPAN---LS 245
Query: 232 RVRDVFLFQCFTGLRYSDVFNLRRSDI-----KDDHIEVTTVKTSDSLIIELNNHSKAIL 286
VRDVF+F +TGL Y D+ NL +I K + KT I+ L + IL
Sbjct: 246 IVRDVFIFAVYTGLSYVDIENLTNENINVGIDKSLWLSYYRQKTDIHAILPLLQPAVNIL 305
Query: 287 DKYKDVAFEDDK----VLPVITNQKMNDYLKELAELAGIDEPI 325
+Y+ A+ + K + PV NQ MN YLK++A+ AG+D+ I
Sbjct: 306 KRYE--AYHEGKRNNHIFPVPLNQVMNRYLKKVAKQAGVDKNI 346
>gi|124008268|ref|ZP_01692964.1| transposase, putative [Microscilla marina ATCC 23134]
gi|123986217|gb|EAY26046.1| transposase, putative [Microscilla marina ATCC 23134]
Length = 415
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 103/425 (24%), Positives = 176/425 (41%), Gaps = 67/425 (15%)
Query: 1 MRVNFASK-RIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINA-----SLLEYYT 54
+R++ + K R +TG +I +W K+ NG + +K S S+I A S++E T
Sbjct: 28 LRISTSKKDRTSISTGIKIKPEQWLVPKKHASNGMTLHIKGSTSKIKALNERLSIIE--T 85
Query: 55 EIQSIFKRFEVEDVMPTPEQIKKAFNALH-----KPVSEE------PKPKKEALPYDFFQ 103
++Q+ + T +K+ + + +SE K KE Y +
Sbjct: 86 KLQNRYNELLKIGAHITARSLKEVLISNNGEITLMSISETLINNIIAKSTKETTTYRARR 145
Query: 104 VFDDFVEDCGRQNNWTDSTFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEM 163
+ + ++ G ++ + LT G+ + LND+ Y K+
Sbjct: 146 IQEFLQDEYGIKD----------LPISGLLTQEYRGMG------KKLNDWCLYR---KKY 186
Query: 164 RNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKI 223
N L LK A GV ++N + +K +++ L E+ ++ + I
Sbjct: 187 SNDVARLTLVLLKNIATEAVDLGVIEHNPINYNFKAIKEHKEQKESLILQEVLKIEKHVI 246
Query: 224 PSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDI-----KDDHIEVTTVKTSDSLIIEL 278
S K AL RVRD FLFQCFTGL Y D +NL D+ K + I KT + +
Sbjct: 247 DS-KSALYRVRDCFLFQCFTGLAYIDTYNLNGDDLLVGVDKRNWIVKKRQKTKVVAKVPI 305
Query: 279 NNHSKAILDKY-KDVAFEDDKVLPV-ITNQKMNDYLKELAELAGIDEPIRQTYYKGNERI 336
++ ILD+Y ++ D ++LPV +N N Y+K+L + GID+ I
Sbjct: 306 IKSAQDILDRYAHNIGKYDGRLLPVYASNSAYNKYIKKLMKEVGIDKKI----------- 354
Query: 337 DDVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAM 396
+H+ R TF G + GHS+ K + Y + D ++ +
Sbjct: 355 ----------SSHSARFTFAEILRTSGAALDNIKDVLGHSEKKMTEHYAKMTDSTISSEL 404
Query: 397 SKFNQ 401
K ++
Sbjct: 405 DKLDK 409
>gi|53714292|ref|YP_100284.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52217157|dbj|BAD49750.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 409
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 68/267 (25%), Positives = 119/267 (44%), Gaps = 32/267 (11%)
Query: 140 LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYK-P 198
L F +E+ + DY ++ K T+ L+ LK R A+K+G + + +K P
Sbjct: 157 LVFGQLNEQFIRDYQDFILLEKGYAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLP 216
Query: 199 KLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDI 258
K K T K L+ + L +LR+ +IP +++ RD+FLF C+TG Y+D ++ R ++
Sbjct: 217 KQKETTPKA--LSRENLEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRKNL 274
Query: 259 -KDDH----IEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLK 313
+DD ++ KT ++L + A+++KY+D E + P + +K
Sbjct: 275 FRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRDDTRE--TLFPPQDYHTLRANMK 332
Query: 314 ELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFIC-NALALGIPPQVVMKW 372
L +AG+ + L H GR +F L G+P + + K
Sbjct: 333 SLRLMAGLSQD---------------------LVYHMGRHSFASLVTLEEGVPIETICKM 371
Query: 373 TGHSDYKAMKPYIDIADDIKANAMSKF 399
GHS+ K + Y + M +F
Sbjct: 372 LGHSNIKTTQIYARVTPKKLFEDMDRF 398
>gi|156859288|gb|EDO52719.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
Length = 421
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 96/421 (22%), Positives = 173/421 (41%), Gaps = 70/421 (16%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ + +F+ ++ WD K G A E+N L + I ++
Sbjct: 27 RITVDGTQAQFSCKMTVNPNLWDT-----KGGRMTGKSMQALEVNRKLDKMRVSISKHYQ 81
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPV---------SEEPKPKKEALPYDFFQVFDDFVEDC 112
D + +++K AF L S + K+ F + C
Sbjct: 82 EIIDRDNFVSADKVKNAFLGLEYRCHTLMKVYEQSRDEMEKQYKAGMKSLSTFTKYRIGC 141
Query: 113 GRQNNWTDSTFE-KFAAVKN----HLTNFREGLTFEFFDER-GLNDYVGYLRDVKEMRNT 166
+ S + K A+K +TN+ TF D++ +N + ++R+++ M
Sbjct: 142 AYVGEFLQSHYRVKDIALKELSLPFITNYE---TFLRIDKQLKINSAMVFVRNLRAMIFR 198
Query: 167 TIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSN 226
I + W ++ F++ Y+ K + T ++I LT +E++ L E P
Sbjct: 199 AIDNE-----WLVKDPFRR----------YEYKNEETTREI--LTKEEIHLLME--TPIT 239
Query: 227 KQALERVRDVFLFQCFTGLRYSDVFNLRRSDIK---DDH--IEVTTVKTSDSLIIELNNH 281
++ + VRD++LF CFTGL + D++NL+ +IK DD I + KT I+L ++
Sbjct: 240 RKHMGLVRDLYLFCCFTGLAFIDLYNLKEENIKTFFDDGEWIVIHRQKTGTEADIKLLDY 299
Query: 282 SKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTP 341
K I++K++ + +D +V PV + LK L + GI +P
Sbjct: 300 PKQIMEKHRGLC-KDGRVFPVPPYRSCLRSLKRLGKKCGITKP----------------- 341
Query: 342 KYALLGTHAGRRTFICNA-LALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFN 400
L H R +F + L+ G+P + V GH D K + Y I + + + K +
Sbjct: 342 ----LSWHVSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKITKEKLSKDVEKLS 397
Query: 401 Q 401
Q
Sbjct: 398 Q 398
>gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29341339|gb|AAO79127.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 409
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 66/268 (24%), Positives = 117/268 (43%), Gaps = 34/268 (12%)
Query: 140 LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYK-P 198
L F E+ ++DY + + K T+ L+ LK R A+K G + + P
Sbjct: 157 LAFGQLTEQFIHDYQSFATEEKGYAIDTVRHHLAILKKICRLAYKDGYADRIHFQHFTLP 216
Query: 199 KLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDI 258
K T + L+ + ++R+ +IP+ +++ RD+FLF C+TG+ Y+DV ++ ++
Sbjct: 217 KKTETTPRA--LSRESFEKIRDVEIPAYRKSHILARDMFLFGCYTGVCYADVVSITHENL 274
Query: 259 KDDH-----IEVTTVKTSDSLIIELNNHSKAILDKYKDVAFED-DKVLPVITNQKMNDYL 312
D ++ K ++L + A+++KY ED D + P++ + ++
Sbjct: 275 YTDEDGALWLKYRRKKNELRACVKLLPEAIALIEKYHS---EDRDTLFPLLHWSNLRRHM 331
Query: 313 KELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFIC-NALALGIPPQVVMK 371
K LA LAGI DD L H R +F L G+P + + +
Sbjct: 332 KALAALAGIK--------------DD-------LCYHQARHSFASLITLEAGVPIETISR 370
Query: 372 WTGHSDYKAMKPYIDIADDIKANAMSKF 399
GHSD + Y ++ M KF
Sbjct: 371 MLGHSDISTTQVYARVSPKKLFEDMDKF 398
>gi|150008748|ref|YP_001303491.1| integrase [Parabacteroides distasonis ATCC 8503]
gi|149937172|gb|ABR43869.1| integrase [Parabacteroides distasonis ATCC 8503]
Length = 406
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 92/412 (22%), Positives = 165/412 (40%), Gaps = 59/412 (14%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
RV +F+ I WDA R K + A IN +L +I ++
Sbjct: 27 RVTINGTVAQFSCKQTIPKTLWDAKGNRAKGKSA-----EARNINLALDNIKAQIIKHYQ 81
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDS 121
R + T E ++ A+ + + E L F + +F++ G+ +
Sbjct: 82 RISDREAYVTAEMVRNAYQGVGS--------EYETLIKAFDKDCANFLKRVGKDR--SIG 131
Query: 122 TFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFL 175
T++ +N++ F R ++ + ++ YL + ++N TI +L
Sbjct: 132 TYKVMVRARNYVAAFIKSFYRRTDMSMLELTPDFIKEFAAYLTAERGLKNATIWLNCMWL 191
Query: 176 KWFLRWAFKKGVHQNNAYDSY--KPKLKSTQKKIIFLTWDELNRL--REFKIPSNKQALE 231
K + A G+ N + + P +K + +LT DE+ R+ EF P+ L
Sbjct: 192 KGVVMRAHYNGLIPRNPFAQFHISPNVKERE----YLTEDEIKRIMAHEFDNPT----LA 243
Query: 232 RVRDVFLFQCFTGLRYSDVFNLRRSDIKDDHIEVTTV----KTSDSLIIELNNHSKAILD 287
VRD+F+F CFT L + D+ L +I + + E + KT+ ++L + I++
Sbjct: 244 LVRDLFIFACFTALSFVDMKELTTDEIVEVNGEKWILSKRHKTNVPFQVKLLDIPLQIIE 303
Query: 288 KYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
+YK ++ ED V I M LK++ GI++ I
Sbjct: 304 RYKYLS-EDKLVFGKINYWTMCKQLKKVMAECGIEKQI---------------------S 341
Query: 348 THAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
H R TF AL+ G+P + V + GH++ + Y I N ++ F
Sbjct: 342 YHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKLDNDLTMF 393
>gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
Length = 409
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 65/267 (24%), Positives = 121/267 (45%), Gaps = 32/267 (11%)
Query: 140 LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPK 199
L F E+ ++DY ++ + K T L+ LK R A+K+G H + + +
Sbjct: 157 LAFGQLTEQFIHDYQTFVTEDKGQAIDTARHYLAILKKICRLAYKEG-HADKIHFQHFTL 215
Query: 200 LKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIK 259
K T+ L+ + ++R+ +IP+ +++ RD+FLF C+TG+ Y+DV ++ ++++
Sbjct: 216 PKKTETTPRALSRESFEKIRDVEIPAYRKSHMLARDMFLFGCYTGVSYADVVSITHANLQ 275
Query: 260 DDH-----IEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVL-PVITNQKMNDYLK 313
D ++ K ++L + A+++KY ED + L P++ + ++K
Sbjct: 276 TDGDGALWLKYRRKKNELRASVKLLPEAIALINKYSS---EDRETLFPLLRWPNLRRHMK 332
Query: 314 ELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFIC-NALALGIPPQVVMKW 372
LA LAGI DD L H R +F L G+P + + +
Sbjct: 333 ALAALAGIK--------------DD-------LCYHQARHSFASLITLEAGVPIETISRM 371
Query: 373 TGHSDYKAMKPYIDIADDIKANAMSKF 399
GHSD + Y ++ M +F
Sbjct: 372 LGHSDISTTQVYARVSPKKLFEDMDRF 398
>gi|150007408|ref|YP_001302151.1| putative phage integrase [Parabacteroides distasonis ATCC 8503]
gi|149935832|gb|ABR42529.1| putative phage integrase [Parabacteroides distasonis ATCC 8503]
Length = 368
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 72/335 (21%), Positives = 138/335 (41%), Gaps = 37/335 (11%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ F+ + A WDA K C+ + A +N L +I ++
Sbjct: 26 RITVNGTTASFSCKRDVPLALWDA-----KGNCAKGKSEEARRLNRELENIKAQIGKHYQ 80
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWT-- 119
D T +++ +N + + + ++F+ + D RQ T
Sbjct: 81 YLSDHDSFLTAKKVYDRYNGFGEEI------------HSLMEIFNIQIRDYKRQIGKTKA 128
Query: 120 DSTFEKFAAVKNHLTNF------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLS 173
ST+ L+ + E + D + +Y ++ V+ + +T ++++
Sbjct: 129 QSTYRGLVDEYKCLSCYLKDKLGTEDIPLMSLDMDFIKNYYNWMLSVRGLAKSTAFERVN 188
Query: 174 FLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERV 233
LKW + A +G + + + K KK FL+ ++L R+ K+ +Q + +
Sbjct: 189 TLKWLMYLAMDEGWIHKHPFKKFV--CKPEYKKRPFLSEEDLQRVISVKLSYRRQ--QAI 244
Query: 234 RDVFLFQCFTGLRYSDVFNLRRSDIKDDHIEVT-----TVKTSDSLIIELNNHSKAILDK 288
RD+F+F CF+GL ++D+ L ++ D T VKT +++L + +++K
Sbjct: 245 RDMFVFMCFSGLAHADLKELSYRNVHTDSDGNTWLVGNRVKTKAPYVVKLLPIAVELIEK 304
Query: 289 YKDV---AFEDDKVLPVITNQKMNDYLKELAELAG 320
Y+ V D+V PV M D LK + E AG
Sbjct: 305 YRGVNEFKVSPDRVFPVGEIGSMEDSLKRIGEKAG 339
>gi|29347338|ref|NP_810841.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339238|gb|AAO77035.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 409
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 32/267 (11%)
Query: 140 LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYK-P 198
L F +E+ + DY ++ K T+ L+ LK R A+K+G + + +K P
Sbjct: 157 LVFGQLNEQFIRDYQDFILLEKGYAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLP 216
Query: 199 KLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDI 258
K K T K L+ + +LR+ +IP +++ RD+FLF C+TG Y+D ++ R ++
Sbjct: 217 KQKETTPKA--LSRENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRKNL 274
Query: 259 -KDDH----IEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLK 313
+DD ++ KT ++L + A+++KY+D E + P + +K
Sbjct: 275 FRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRDDTRE--TLFPPQDYHTLRANMK 332
Query: 314 ELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFIC-NALALGIPPQVVMKW 372
L +AG+ + L H GR +F L G+P + + K
Sbjct: 333 SLRLMAGLSQD---------------------LVYHMGRHSFASLVTLEEGVPIETICKM 371
Query: 373 TGHSDYKAMKPYIDIADDIKANAMSKF 399
GHS+ K + Y + M +F
Sbjct: 372 LGHSNIKTTQIYARVTPKKLFEDMDRF 398
>gi|156860150|gb|EDO53581.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492]
Length = 409
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 32/267 (11%)
Query: 140 LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYK-P 198
L F +E+ + DY ++ K T+ L+ LK R A+K+G + + +K P
Sbjct: 157 LVFGQLNEQFIRDYQDFILLEKGYAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLP 216
Query: 199 KLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDI 258
K K T K L+ + +LR+ +IP +++ RD+FLF C+TG Y+D ++ R ++
Sbjct: 217 KQKETTPKA--LSRENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRKNL 274
Query: 259 -KDDH----IEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLK 313
+DD ++ KT ++L + A+++KY+D E + P + +K
Sbjct: 275 FRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRDDTRE--TLFPPQDYHTLRANMK 332
Query: 314 ELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFIC-NALALGIPPQVVMKW 372
L +AG+ + L H GR +F L G+P + + K
Sbjct: 333 SLRLMAGLSQD---------------------LVYHMGRHSFASLVTLEEGVPIETICKM 371
Query: 373 TGHSDYKAMKPYIDIADDIKANAMSKF 399
GHS+ K + Y + M +F
Sbjct: 372 LGHSNIKTTQIYARVTPKKLFEDMDRF 398
>gi|91217859|ref|ZP_01254813.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
700755]
gi|91183952|gb|EAS70341.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
700755]
Length = 155
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 245 LRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVIT 304
L ++ + DI I + T KT + I + + ILDKY D+ P ++
Sbjct: 3 LTQKNILEFKEGDITMTAIAIETKKTEKRIEIPIKRDLQKILDKY------DNNFPPKVS 56
Query: 305 NQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGI 364
+ ++N Y+K++ + AG++E ++ +G E PKY + +H RR+F NA G+
Sbjct: 57 DSRINLYIKKVCKAAGLNEAVKMKIIEGGETSLTSMPKYQRVASHTARRSFCTNAFNGGM 116
Query: 365 PPQVVMKWTGHSDYKAMKPYI 385
P +M +GH KA YI
Sbjct: 117 QPIDIMSISGHKTEKAFFIYI 137
>gi|83815635|ref|YP_444738.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
gi|83757029|gb|ABC45142.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
Length = 467
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 80/338 (23%), Positives = 143/338 (42%), Gaps = 48/338 (14%)
Query: 17 RIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMPTPEQIK 76
++ + KW+ DK+RV A EIN L + S+ R E + T ++IK
Sbjct: 93 KVLAKKWNGDKRRVTG-----THPDAGEINTFLSDLERAAFSVISRLERAGTLITAQRIK 147
Query: 77 KAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVKNHLTNF 136
+E + + ++ P DF + V+ R+ TF + T F
Sbjct: 148 DEI--------QEEREEVKSAPEDFLAFAREKVKGYKRRGQI--GTFRSYRTTCRKFTAF 197
Query: 137 ------REGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQN 190
R+ + F + ++ Y + + T+G++L ++ +R A K+G
Sbjct: 198 IEETYGRDEVPFGALEAELFREFRTYCYEERGNSTNTVGRELGIMRTLVRHAMKEGKLSA 257
Query: 191 NAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTG-LRYSD 249
++ + +QK++ LT +E+ R+ + +I A E R FLF + G +R+SD
Sbjct: 258 YPFEHITIDSEPSQKEL--LTPEEVERIADLEIDEESPAAE-ARRWFLFAYYAGGMRFSD 314
Query: 250 VFNLRRSDIKDDHIEVTTV-----KTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVIT 304
V L+ I++ V KT+D++ + L +K IL +Y++ E D V P+
Sbjct: 315 VATLQWQHIREGRSGRPRVCYKMKKTADTVGVPLIPEAKEILCRYEEGDGE-DWVFPISE 373
Query: 305 -----------------NQKMNDYLKELAELAGIDEPI 325
N N +LKELA AGI++ +
Sbjct: 374 GIDPGNEEALHRRKCQRNSAANRHLKELAGQAGIEKRV 411
>gi|53711957|ref|YP_097949.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|60680159|ref|YP_210303.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
gi|52214822|dbj|BAD47415.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|60491593|emb|CAH06345.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
Length = 393
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 97/390 (24%), Positives = 160/390 (41%), Gaps = 56/390 (14%)
Query: 8 KRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVED 67
K+ F+T + +WD K+ VKN +A IN L E+ EI+ +
Sbjct: 33 KKKYFSTKVYLSPDQWDFKKRMVKN------HPNADAINHMLYEFMAEIE--------KK 78
Query: 68 VMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFA 127
+ +Q K+ K E + + ++ +++ ++N+ ST E
Sbjct: 79 ELGLWQQGKQISLDSLKNSMENQDDSTSFIAFFRNEIAKSSLKESTKRNHL--STLELLR 136
Query: 128 AVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGV 187
+ K ++ F E LTFEF ++ + YL+ K TI K + LK + A K
Sbjct: 137 SYKKDVS-FSE-LTFEF-----ISSFDHYLQQ-KGYHTNTIAKHMKHLKRHINVAINKEY 188
Query: 188 HQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRY 247
+ Y K K+KS + L+ +EL ++ ++ LE+ +D FLF C+ GLRY
Sbjct: 189 MEIQKYAFRKYKIKSVENNHTHLSPEELGKIESLELGGRFTKLEKTKDAFLFCCYAGLRY 248
Query: 248 SDVFNLRRSDIKDDHIEV----TTVKTSDSLIIEL----NNHSKAILDKYKDVAFEDDKV 299
SD NL +I H E +VKT+ + + L +L+KY+D +
Sbjct: 249 SDFTNLSPENIVKMHQETWLIYKSVKTNTEVRLPLYLLFEGKGIEVLNKYQD---DLADF 305
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
+ N +N L +A+L+G+ N+RI H R T
Sbjct: 306 FKLRDNSNVNKELLIIAKLSGL-----------NKRIS----------FHTARHTNATLL 344
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
+ G+ V K GH K + Y +I D
Sbjct: 345 IYSGVNITTVQKLLGHKSVKTTQVYTNIMD 374
>gi|150006223|ref|YP_001300967.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|149934647|gb|ABR41345.1| transposase [Bacteroides vulgatus ATCC 8482]
Length = 412
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 65/269 (24%), Positives = 117/269 (43%), Gaps = 29/269 (10%)
Query: 138 EGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYK 197
+ + F DE+ + +Y+ + D + + T+ L+ LK R AFK G + + +K
Sbjct: 155 DDVAFGELDEQFIREYMDFCLDERGLALDTVRHYLAILKKTCRIAFKAGHSERYHFMHFK 214
Query: 198 -PKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRS 256
P+ K K LT ++ ++R+ +IP +++L RD+FLF C+TG Y+D ++
Sbjct: 215 LPQKKENPPKA--LTREDFLKIRDLEIPERRKSLALTRDLFLFACYTGTAYADTVSITEE 272
Query: 257 DIKDDH-----IEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDY 311
++ D ++ K ++L + A+L+KYKD +LP + +
Sbjct: 273 NLFRDEEGSLWLKYHRKKNKMLARVKLLPEALAMLEKYKDPT--RPTLLPPQEFRVLRGN 330
Query: 312 LKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFIC-NALALGIPPQVVM 370
+K L L+GI Y H GR +F L G+P + +
Sbjct: 331 MKSLRVLSGISGISMDLVY------------------HVGRHSFASLVTLEEGVPIETIS 372
Query: 371 KWTGHSDYKAMKPYIDIADDIKANAMSKF 399
+ GHS+ + + Y + M KF
Sbjct: 373 RMLGHSNIQTTQIYARVTPKKLFEDMDKF 401
>gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides distasonis ATCC 8503]
gi|149935814|gb|ABR42511.1| integrase [Parabacteroides distasonis ATCC 8503]
Length = 248
Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 32/240 (13%)
Query: 167 TIGKQLSFLKWFLRWAFKKGVHQNNAYDSYK-PKLKSTQKKIIFLTWDELNRLREFKIPS 225
T+ L+ LK R A+K+G + + PK T + L+ + R+R+ +IP+
Sbjct: 23 TVRHHLAILKKICRLAYKEGYADRIHFQHFTLPKKTETTPRA--LSRESFERIRDVEIPA 80
Query: 226 NKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKDDH-----IEVTTVKTSDSLIIELNN 280
+++ RD+FLF C+TG+ Y+DV ++ ++ D ++ K ++L
Sbjct: 81 YRKSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKYRRKKNELRASVKLLP 140
Query: 281 HSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVT 340
+ A+++KY + + D + P++ + ++K LA LAGI DD
Sbjct: 141 EAIALIEKYH--SGDRDTLFPLLHWSNLRRHMKALAALAGIK--------------DD-- 182
Query: 341 PKYALLGTHAGRRTFIC-NALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
L H R +F L G+P + + + GHSD + Y ++ M KF
Sbjct: 183 -----LCYHQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKF 237
>gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
Length = 396
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 91/390 (23%), Positives = 154/390 (39%), Gaps = 56/390 (14%)
Query: 8 KRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVED 67
K+ F+T + +WD K VKN +A +N + E+ I+ K E+
Sbjct: 33 KKKYFSTKVYLKPEQWDNKKLIVKN------HPNADALNRLIYEFMAMIEK--KELELW- 83
Query: 68 VMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFA 127
+Q ++ L K V + K +P+ ++ + +++ ++N+ ST
Sbjct: 84 -----QQGRRISLELLKDVLSTSENKTSFIPFFRQEIANSTLKESTKRNHL--STLSLLQ 136
Query: 128 AVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGV 187
K +T F + LTFEF Y + TI K + LK + A K
Sbjct: 137 QFKKDVT-FSD-LTFEFISS------FEYFLQSRGYHTNTIAKHMKHLKRHINVAINKDY 188
Query: 188 HQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRY 247
+ Y K K+K+ + K L+ +EL +L + + L++ D FLF C+ G+RY
Sbjct: 189 MEIQKYAFRKYKIKTIENKHTHLSPEELEKLEKLSLAGRYTKLQKTLDAFLFCCYAGMRY 248
Query: 248 SDVFNLRRSDIKDDHIEV----TTVKTSDSLIIEL----NNHSKAILDKYKDVAFEDDKV 299
SD +L +I + E ++KTS + + L ILDKY+D +
Sbjct: 249 SDFISLSPDNIVEIRQETWLIYKSIKTSTEVRLPLYLLFEGKGLVILDKYRD---DLQSF 305
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
+ N +N L ++ LAG+ + I H R T
Sbjct: 306 FHLRDNSNVNKDLIVISRLAGLSKKI---------------------SFHTARHTNATLL 344
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
+ G+ V K GH K + Y ++ D
Sbjct: 345 IYNGVNITTVQKLLGHKSVKTTQVYTNVMD 374
>gi|150004395|ref|YP_001299139.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
gi|149932819|gb|ABR39517.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
Length = 386
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 130 KNHLT------NFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAF 183
+NHLT +F+ + FE + D+ L + NT + K + LK F+ A
Sbjct: 125 RNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKNLYESGYQTNT-VAKHMKHLKSFVNAAI 183
Query: 184 KKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFT 243
KG N Y + K+K + K +FL +E+ +L E + LE D FLF C+T
Sbjct: 184 NKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLTGRNSCLEHTLDAFLFCCYT 243
Query: 244 GLRYSDVFNLRRSDI 258
GLRYSD NL +I
Sbjct: 244 GLRYSDFVNLNEKNI 258
>gi|88710848|ref|ZP_01104936.1| integrase [Flavobacteriales bacterium HTCC2170]
gi|88709789|gb|EAR02021.1| integrase [Flavobacteriales bacterium HTCC2170]
Length = 402
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 35/293 (11%)
Query: 114 RQNNWTDSTFEKFAAVKNHLTNFREGLTFEF--------FDERGLNDYVGYLRDVKEMRN 165
R + + ST +K+ + N L+N+ + ++ F ER ++ YL DV ++
Sbjct: 102 RSSQKSLSTVKKYHTIVNKLSNYEKHTGKKYLVQDIDLAFRER----FIDYLSDVDKLSM 157
Query: 166 TTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPS 225
TIG+ L F+K A K G+ + + + + + L++D+L ++++ K+
Sbjct: 158 NTIGRYLKFVKTICIDADKNGITVSKQLPFFMG--FTEESPTVTLSFDDLEKIKQTKLEE 215
Query: 226 NKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKD----DHIEVTTVKTSDSLIIELNNH 281
K L RD + C+TG R SD+ + S + + I + KT + I ++
Sbjct: 216 EK--LLIARDWLIIGCYTGQRVSDLLRISTSMFQKIQGFNFIVLNQKKTGKIVQIPIHPE 273
Query: 282 SKAILDKYKDVAFEDDKVLPVITNQ------KMNDYLKELAELAGIDEPIRQTYY-KGNE 334
+ ILDK + + P+ TN N YLK+L E A I+E + Y K E
Sbjct: 274 VRKILDK------RNSQFPPLHTNNLESSKTLFNRYLKKLCESAQINELVEGNLYDKETE 327
Query: 335 RIDD-VTPKYALLGTHAGRRTFICNALA-LGIPPQVVMKWTGHSDYKAMKPYI 385
R + K+ L+ +H RR+F N P ++M T HS + YI
Sbjct: 328 RTKKGLYEKFKLVSSHICRRSFATNFYGDPEYPTPLLMNITAHSTERQFLEYI 380
>gi|156862826|gb|EDO56257.1| hypothetical protein BACUNI_00095 [Bacteroides uniformis ATCC 8492]
Length = 197
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 13/121 (10%)
Query: 209 FLTWDELNRL--REFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDI---KDDH- 262
+LT +EL + REF + LE+VRD++LF C+TGL Y D+ NL+ +I KD
Sbjct: 20 YLTMEELAAIIKREF----DSSRLEKVRDLYLFACYTGLVYQDIKNLQPYNIITAKDGTR 75
Query: 263 -IEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGI 321
+ + S S I L ++ I+DKYKD E+ +LPV + QK+N YLKE+A G+
Sbjct: 76 WLSIRRQMHSSSWQIPLLENACQIIDKYKDNGTEN--LLPVPSIQKVNAYLKEIASQCGL 133
Query: 322 D 322
D
Sbjct: 134 D 134
>gi|60683282|ref|YP_213426.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
gi|60494716|emb|CAH09518.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
Length = 409
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 92/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGC--SNKLKQSASEINASLLEYYTEIQSI 59
R+ + F++ + + WD R K + L Q I A + ++Y I
Sbjct: 26 RITVNGTQAGFSSKRTVSLSLWDVKANRAKGKSEEARTLNQELDNIKAQITKHYQYICD- 84
Query: 60 FKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWT 119
D T KK +N + SEE L F + + + E G+
Sbjct: 85 ------HDSFVTA---KKVYNR-YAGFSEEC----HTLMVLFREQIESYKEKIGKGK--A 128
Query: 120 DSTFEKFAAVKNHLTNFR------EGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLS 173
+ST+ A L F E + + ++ + DY ++ N T +++
Sbjct: 129 ESTYRGLVADYKSLLLFMKTQKNIEDIAIDELEKSFIEDYYTWMLGTAGNANATAFNRVN 188
Query: 174 FLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERV 233
+KW + A +KG + + + S++ K KK FLT +EL R+ + +Q +
Sbjct: 189 TMKWLMYIAQEKGWLRVHPFTSFE--CKPEYKKRSFLTEEELQRIIHVDLKYKRQ--RAM 244
Query: 234 RDVFLFQCFTGLRYSDVFNLRRSDIKDDH-----IEVTTVKTSDSLIIELNNHSKAILDK 288
RD+FLF CFTGL Y+D+ + +I D + +KT + +++L + +++K
Sbjct: 245 RDMFLFMCFTGLAYADLRAITYDNIHTDSDGGTWLMGNRIKTGVAYVVKLLPIAIELIEK 304
Query: 289 YKDVAFEDDK---VLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYAL 345
Y+ V + D V PV M L+ + K + +VTP
Sbjct: 305 YRGVDEKKDSPDCVFPVGEYNTMFLSLRIIG--------------KKCDCHTEVTP---- 346
Query: 346 LGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDI 387
H GR TF A+ G+P + + K GH+ + + Y ++
Sbjct: 347 ---HIGRHTFAVLAILKGMPLETLQKVLGHNSILSTQVYAEL 385
>gi|53711443|ref|YP_097435.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|154490858|ref|ZP_02030799.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
43184]
gi|46242813|gb|AAS83518.1| Int [Bacteroides fragilis]
gi|52214308|dbj|BAD46901.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|154088606|gb|EDN87650.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
43184]
Length = 411
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 93/403 (23%), Positives = 157/403 (38%), Gaps = 56/403 (13%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ + +F+ +D WD RV + +A E N L + I ++
Sbjct: 27 RITVDGSQTQFSCKLTVDPKLWDTKGGRVTGRST-----AALETNRMLDKMRVRINRHYQ 81
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQ---NNW 118
D T E++K AF L E + QVF ED +Q
Sbjct: 82 EIMERDNFVTAEKVKNAFLGL------------EHRYHTLMQVFRQHNEDYEKQVEAGMK 129
Query: 119 TDSTFEKFAAVKNHLTNFRE------GLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQL 172
T K+ V H+ F + + + ++D+ +LR K T+ +
Sbjct: 130 AKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTDKHCCTNTVWLYV 189
Query: 173 SFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALER 232
L+ + A + + Y+ K + T + FLT DE+ L E K+ + KQ L
Sbjct: 190 CPLRTMVFIAINNEWLTRDPFREYEIKKEETTRS--FLTKDEIRLLMEGKLKNAKQEL-- 245
Query: 233 VRDVFLFQCFTGLRYSDVFNLRRSDIK---DDH--IEVTTVKTSDSLIIELNNHSKAILD 287
RD++LF FTGL ++D+ NL +I+ D+H I + KT I L + + I+
Sbjct: 246 YRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIANRIIG 305
Query: 288 KYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
KY+ + D ++ PV ++ +A+ GI + I T+++
Sbjct: 306 KYRGLC-GDGRIFPVPHYNTCLAGIRAVAKRCGITKHI--TWHQSRHT------------ 350
Query: 348 THAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADD 390
A F+ N G+P + V GH K + Y I +
Sbjct: 351 --AATTIFLSN----GVPIETVSSMLGHKSIKTTQIYAKITKE 387
>gi|146298371|ref|YP_001192962.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
gi|146152789|gb|ABQ03643.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
Length = 348
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 16/166 (9%)
Query: 223 IPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIK----DDHIEVTTVKTSDSLIIEL 278
IPS+K R++D+F+F C TGLRYSD+F L + + D ++++ + KT I+L
Sbjct: 158 IPSHK----RIKDIFVFGCSTGLRYSDIFLLTNKNFEQMEGDWYLKLKSQKTKTFSFIKL 213
Query: 279 NNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQT------YYKG 332
+ ++ I +YK + + + I+ N LK++ E AG PI + K
Sbjct: 214 SAYAITIFQRYKATS-DRIPIFGTISLFNFNKSLKQIGEQAGFTMPIEVSREQQGKTQKL 272
Query: 333 NERIDDVTPKYA-LLGTHAGRRTFICNALALGIPPQVVMKWTGHSD 377
++ D ++ + +H RRT I L LG+P +V K +GHS+
Sbjct: 273 TKKTDTSRNRFCDKMSSHMMRRTAITTLLILGMPEHLVRKISGHSN 318
>gi|15072714|emb|CAC47921.1| integrase protein [Bacteroides thetaiotaomicron]
Length = 411
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 94/403 (23%), Positives = 157/403 (38%), Gaps = 56/403 (13%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ + +F+ +D WD RV + +A E N L + I ++
Sbjct: 27 RITVDGSQTQFSCKLTVDPKLWDTKGGRVTGRST-----AALETNRMLDKMRVRINKHYQ 81
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQ---NNW 118
D T E++K AF L E + QVF ED +Q
Sbjct: 82 EIMERDNFVTAEKVKNAFLGL------------EHRYHTLMQVFRRHNEDYEKQVEAGMK 129
Query: 119 TDSTFEKFAAVKNHLTNFR------EGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQL 172
T K+ V HL F + + + ++D+ +LR K T+ +
Sbjct: 130 AKGTLLKYRTVYKHLQEFLTIRYHVKDIALKELTPAFISDFEMFLRTDKHCCTNTVWLYV 189
Query: 173 SFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALER 232
L+ + A + + Y+ K + T + FLT +E+ L E K+ + KQ L
Sbjct: 190 CPLRTMVFIAINNEWLTRDPFREYEIKKEETTRS--FLTKEEIRLLMEGKLKNAKQEL-- 245
Query: 233 VRDVFLFQCFTGLRYSDVFNLRRSDIK---DDH--IEVTTVKTSDSLIIELNNHSKAILD 287
RD++LF FTGL +SD+ NL +I+ D+H I + KT I L + + I+
Sbjct: 246 YRDLYLFCAFTGLSFSDMRNLTDENIRTYFDEHEWININRQKTGVVSNIRLLDIANRIIG 305
Query: 288 KYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
KY+ + D ++ PV ++ +A+ GI + I T+++
Sbjct: 306 KYRGLC-GDGRIFPVPHYNTCLAGIRAVAKRCGITKHI--TWHQSRHT------------ 350
Query: 348 THAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADD 390
A F+ N G+P + V GH K + Y I +
Sbjct: 351 --AATTVFLSN----GVPIETVSSMLGHKSIKTTQIYAKITKE 387
>gi|83814942|ref|YP_445217.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
gi|83756336|gb|ABC44449.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
Length = 415
Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 77/323 (23%), Positives = 146/323 (45%), Gaps = 30/323 (9%)
Query: 1 MRVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIF 60
+R++ + KR + + ++KW+ D+QRV + +S INA L E + Q
Sbjct: 23 LRISHSGKRKFVSLDLDVLASKWNDDRQRV-----TRSHPDSSRINARLSEVESVAQRAV 77
Query: 61 KRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFD-DFVEDCGRQNNWT 119
R + + T +I++ V EE ++E YD F F D VE R++ T
Sbjct: 78 SRLQSAGEVITASRIQQV-------VKEELFGEEEESGYDDFIAFAWDEVEAYRRRDQMT 130
Query: 120 DSTFEKFAAVKNHLTNFREG----------LTFEFFDERGLNDYVGYLRDVKEMRNTTIG 169
TF + F E L+F+ + + ++ ++ +V+ T+G
Sbjct: 131 --TFRHYRTGIRKFLGFLEDESGQSQEDITLSFDALTVQLIREFRNHMYEVRGNAPNTVG 188
Query: 170 KQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQA 229
K L+ +K A K+G + + +QK+ L ++E+ L E +P + +
Sbjct: 189 KTLTQIKTMWNAAVKEGHADRDPWPKITIDSAPSQKEK--LDFEEIEALEEVDLPE-EGS 245
Query: 230 LERVRDVFLFQCFTG-LRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDK 288
R D FLF + G +R+SDV L+ ++ I+ KTS+ + + + ++AILD+
Sbjct: 246 ERRALDYFLFALYGGGMRFSDVATLKHKHLEGGRIQYKMKKTSEGAGVPIVDKAEAILDR 305
Query: 289 YKDVAFE-DDKVLPVITNQKMND 310
Y + E + +V P++ +++
Sbjct: 306 YDNRPQEPESRVFPILDGYDLDE 328
>gi|153838484|ref|ZP_01991151.1| integrase [Vibrio parahaemolyticus AQ3810]
gi|149748107|gb|EDM58966.1| integrase [Vibrio parahaemolyticus AQ3810]
Length = 392
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 83/331 (25%), Positives = 141/331 (42%), Gaps = 57/331 (17%)
Query: 89 EPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVKNHLTNF--REGLTFEFFD 146
E + K+ A D+FQ D ++ + S + + + HL + + L+F+ D
Sbjct: 86 EDRTKRSASFIDYFQRQIDI-----KEQTTSTSNHSIWLSARKHLLFYCGKHDLSFDELD 140
Query: 147 ERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWF------LRWAFKKGVHQNNAYDSYKPKL 200
+ L+ + YL + + ++ T + +F + A ++G+ ++N S +
Sbjct: 141 KDWLDGFKYYLTNEAKTKSDTALSHNTQSSYFNKVRAAINEAHREGIIRDNPL-SQVTSI 199
Query: 201 KSTQKKIIFLTWDELNRL--REFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDI 258
K+ K ++LT DE+N L E + P K+A FLF C TG+R+ D+ L S++
Sbjct: 200 KAKTTKRVYLTLDEVNALAHTECRYPVLKRA-------FLFSCATGMRWCDIHRLTWSEV 252
Query: 259 KDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAEL 318
+ NNH + I D+ K ++ D K L + D K L
Sbjct: 253 E-----------------TFNNHKRIIFDQAK-LSQGDAKSLQYL------DIPKSAESL 288
Query: 319 AGIDEPIRQTYYKG---NERIDDVTPKYALLGT-------HAGRRTFICNALALGIPPQV 368
G + + +KG + I+ ++AL HAGR TF L+ GI
Sbjct: 289 LGSPKASHERVFKGLKYSSYINVELLRWALAAGISKHVTFHAGRHTFAVIQLSRGIDIYA 348
Query: 369 VMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
V K GHS+ K + Y DI + + AM F
Sbjct: 349 VSKLLGHSELKTTEIYADIIEQRRMEAMLTF 379
>gi|34540596|ref|NP_905075.1| integrase [Porphyromonas gingivalis W83]
gi|34541125|ref|NP_905604.1| integrase [Porphyromonas gingivalis W83]
gi|34396909|gb|AAQ65974.1| integrase [Porphyromonas gingivalis W83]
gi|34397441|gb|AAQ66503.1| integrase [Porphyromonas gingivalis W83]
Length = 409
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 91/420 (21%), Positives = 165/420 (39%), Gaps = 71/420 (16%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ ++F+ W+ + R+ NG SN+ A E+NA L + I + F
Sbjct: 28 RITVNRSMVQFSCKLSCTPDLWNPRESRL-NGKSNE----AVEVNAKLDKLLLSIHAAFD 82
Query: 62 RFEVEDVMPTPEQIKKAFN----------ALHKPVSEEPKPK------KEALPYDFFQVF 105
E +K F A+ V EE + + K P F+
Sbjct: 83 TLVERKADFDAEAVKNLFQGSLETQMTLLAMTDIVCEELRKRIGIDRAKGTYPAYFY--- 139
Query: 106 DDFVEDCGRQNNWTDSTFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRN 165
T T +F K H + + F E+ ++DY ++ D K +
Sbjct: 140 -------------TRRTLAEFIQKKFH----SKDIAFGQLTEQFIHDYQFFVVDDKGLTI 182
Query: 166 TTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPS 225
T L+ +K R A+K+G + + + ++ K +K L+ + ++R+ IP
Sbjct: 183 ETSRHYLAIIKKVCRKAYKEG-YADKCFFAHFSLPKQEEKTPKALSRESFEKIRDLVIPE 241
Query: 226 NKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKDDH-----IEVTTVKTSDSLIIELNN 280
++ + RD+FLF C+TG Y+D ++ R ++ D ++ K ++L
Sbjct: 242 HRSSHILARDLFLFACYTGTSYADAVSVTRDNLFTDDEGSLWLKYRRKKNELQACVKLLP 301
Query: 281 HSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVT 340
+ +++KY D + P++ + + +K LA LA I E + TY
Sbjct: 302 EALELIEKYNDDT--RPTLFPMLYHPNLRRLMKCLAVLADIKEDL--TY----------- 346
Query: 341 PKYALLGTHAGRRTFIC-NALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
HAGR +F L G+P + + K GHS+ + + Y + M K+
Sbjct: 347 --------HAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDKY 398
>gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339758|gb|AAO77553.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 409
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 36/289 (12%)
Query: 118 WTDSTFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKW 177
+T T +F K +++ L F +E+ + DY ++ K T+ L+ LK
Sbjct: 139 FTYRTLSEFIKAKFKVSD----LAFGQLNEQFIRDYQDFILMEKGHAVDTLRGYLAILKK 194
Query: 178 FLRWAFKKGVHQNNAYDSYK-PKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDV 236
R A+K+G + + +K PK K + K L+ + +LR+ +IP +++ RD+
Sbjct: 195 ICRIAYKEGHSEKYHFCHFKLPKQKESTPKA--LSRENFEKLRDLEIPEKRRSHVITRDL 252
Query: 237 FLFQCFTGLRYSDVFNLRRSDIKDDH-----IEVTTVKTSDSLIIELNNHSKAILDKYKD 291
FLF C+TG Y+DV ++ R ++ D ++ KT+ ++L + +++KY+D
Sbjct: 253 FLFACYTGTAYADVVSITRENLFTDEENNLWLKYRRKKTNYLGRVKLLPEALVLIEKYRD 312
Query: 292 VAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAG 351
A + P + +K L +AG+ + L H
Sbjct: 313 DA--RMTLFPPQDYHTLRANMKSLRLMAGLSQD---------------------LVYHTA 349
Query: 352 RRTFIC-NALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
R +F L G+P + + K GHS+ K + Y + M +F
Sbjct: 350 RHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRF 398
>gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
Length = 390
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 75/295 (25%), Positives = 124/295 (42%), Gaps = 51/295 (17%)
Query: 124 EKFAAVKNHLTNFREG-LTFEFFDERGLNDYVGYLRDV----------KEMRNTTIGKQL 172
E V+ +L +G + E + YV +LR+ + + T + L
Sbjct: 119 EMLHTVEKYLDETNKGFIALEEVNAEFCRGYVKFLRNFPNSHIKYGEPRPISENTASRYL 178
Query: 173 SFLKWFLRWAFKKGVHQNNAYDSY--KPKLKSTQKKIIFLTWDELNRLREFKIPSNKQAL 230
L A ++G+ +NN + +++ + K +LT +EL L I ++
Sbjct: 179 GMFSTALNNAVRQGIIRNNPMKELDARERIQPKEGKKEYLTIEELRTL----IATDSYRP 234
Query: 231 ERVRDVFLFQCFTGLRYSDVFNL------RRSDIKDDHIEVTTVKTSDSLIIELNNHSKA 284
E V++ F+F CFTGLR SD++ L + +D K ++I++ KT +II L+ +K
Sbjct: 235 E-VKEAFIFACFTGLRLSDMYRLAPMHIFKTADGKGEYIDMEMQKTEKPVIIPLSEEAKR 293
Query: 285 ILDKYK--DVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPK 342
L K + D+ F D +P T + L + AE AGI++ I
Sbjct: 294 WLPKPRGNDIPFFD---IPT-TQTVIGRALHKWAEAAGIEKHI----------------- 332
Query: 343 YALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMS 397
H R TF L LG K GHS+ + + Y I D K A++
Sbjct: 333 ----SFHCSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKKEEAIN 383
>gi|60681762|ref|YP_211906.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
gi|60493196|emb|CAH07978.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
Length = 387
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 82/382 (21%), Positives = 145/382 (37%), Gaps = 53/382 (13%)
Query: 31 KNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMPTPEQIKKAFNALHKPVSEEP 90
K G + A +IN + ++ I + ++++ E + +N
Sbjct: 47 KTGMLRGTNKEAKDINLIIERLKAKVNDILVKHRLKNLTLNKEAFMREYNN--------- 97
Query: 91 KPKKEALPYDFFQVFDDFVEDCGR--QNNWTDSTFEKFAAVKNHLTNFREGLTFEFFDER 148
P DF + F DFV + TF + + EGL F E
Sbjct: 98 -------PSDF-KSFHDFVASYMKTYSRRLEIGTFRHHKSCMRKFKEYCEGLQFHELTED 149
Query: 149 GLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKII 208
L DY+ Y++ ++T + LS +K ++ A KKG +N+ + + +K + I
Sbjct: 150 FLRDYLIYMKKTLCNADSTAQRNLSTIKIYVSAAIKKGYMENDPFKDF--GVKRIKSNID 207
Query: 209 FLTWDELNRLREF----KIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKDDHIE 264
+LT +EL + ++P + LER FLF CFT L SD ++ I + +
Sbjct: 208 YLTEEELIKFISLYYDRRLP---ERLERTLGFFLFMCFTSLHISDARHVCLEQINNGILT 264
Query: 265 VTTVKTS----DSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAG 320
+K +++ I L+ + I+++ + E + +Q +N +KE+A +
Sbjct: 265 YYRIKNRNCKPEAIKIPLSIPAFKIIEELQGKRKEGHLFTSLQCDQVVNRQIKEIASILE 324
Query: 321 IDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKA 380
I + + GR TF L + K GHS+ K
Sbjct: 325 IKKKV---------------------SAKTGRHTFATIFLKKTKDVATLQKLLGHSNLKE 363
Query: 381 MKPYIDIADDIKANAMSKFNQL 402
Y + D+ K M FN
Sbjct: 364 TMIYAHVLDESKQEGMQCFNSF 385
>gi|150004923|ref|YP_001299667.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|149933347|gb|ABR40045.1| transposase [Bacteroides vulgatus ATCC 8482]
Length = 311
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 37/257 (14%)
Query: 91 KPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVKNHLTNFREG--LTFEFFDER 148
+P K +++ Q + + G++ T E + + N FR+G L F+ D
Sbjct: 12 RPSKGVFVFEYMQEQIERLRGQGKER-----TVETYQSALNSFMKFRDGIDLCFDEMDAD 66
Query: 149 GLNDYVGYLRDVKEM-RNTTIGKQLSFLKWFLRWAFKKGVHQNNA-----YDSYKPKLKS 202
+ Y +R + RNTT SF LR ++K V + A +++ +
Sbjct: 67 LMEHYETEMRSTHHLSRNTT-----SFYMRILRCVYRKAVGEGLALPADPFENVYTGVDK 121
Query: 203 TQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFT-GLRYSDVFNLRRSDIKDD 261
T K+ LT ++ +++ + S+ ++LE RD+FLF + G+ + D+ LR+ D+
Sbjct: 122 TSKRAATLT--DIKHIKQLDL-SDHKSLEFARDIFLFSFYMRGMSFIDLAYLRKKDLNSG 178
Query: 262 HIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQK-------------M 308
+ + KT LII + I+D+Y D E +LP+I + +
Sbjct: 179 FVSYSRRKTGKKLIIRWEKQMQEIIDRYGDS--ETQYLLPIIEREDGTEHRQYRNKMLLV 236
Query: 309 NDYLKELAELAGIDEPI 325
N LK++A AG+ P+
Sbjct: 237 NRKLKKIAARAGLTTPL 253
>gi|60681034|ref|YP_211178.1| putative integrase [Bacteroides fragilis NCTC 9343]
gi|60492468|emb|CAH07238.1| putative integrase [Bacteroides fragilis NCTC 9343]
Length = 240
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 26/201 (12%)
Query: 122 TFEKFAAVKNHLTNFR-----------EGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGK 170
T+EK+ V NHL +F + LT F + D+ YLR + N T+
Sbjct: 6 TYEKYVTVYNHLKDFLYQRLHLKDIALKELTLAF-----IKDFDMYLRTDRHCCNNTVWI 60
Query: 171 QLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQAL 230
+ L+ + A G + + Y+ + + T + FL DE+ RL + + + KQ L
Sbjct: 61 YTAPLRTMVNVAIDNGWPTRDPFRKYEIEKEETART--FLNKDEIARLLDTLMKNVKQEL 118
Query: 231 ERVRDVFLFQCFTGLRYSDVFNLRRSDIKDDH-----IEVTTVKTSDSLIIELNNHSKAI 285
+RD+FLF FTGL ++D++NL +++ I + KT+ I L + +
Sbjct: 119 --IRDLFLFCTFTGLAFADLYNLSEENLRTYFDARLWINIPRQKTNVVSNIRLLDIPHRL 176
Query: 286 LDKYKDVAFEDDKVLPVITNQ 306
++KY+D+A D KV PV + Q
Sbjct: 177 INKYRDLA-TDGKVFPVPSYQ 196
>gi|154492975|ref|ZP_02032601.1| hypothetical protein PARMER_02617 [Parabacteroides merdae ATCC
43184]
gi|154087280|gb|EDN86325.1| hypothetical protein PARMER_02617 [Parabacteroides merdae ATCC
43184]
Length = 356
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
Query: 140 LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYK-P 198
L F +E+ + DY + + K + T+ LS LK R A+K+G + + +K P
Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKKRLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHFKLP 216
Query: 199 KLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDI 258
K K T K L+ + +LR+ +IP +++ RD+FLF C+TG Y+D ++ R ++
Sbjct: 217 KQKETTLKA--LSRENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRENL 274
Query: 259 KDDH-----IEVTTVKTSDSLIIELNNHSKAILDKYKD 291
D ++ KT ++L + A+++KY+D
Sbjct: 275 FTDDEGSLWLKYRRKKTDYLGRVKLLPEALALIEKYRD 312
>gi|150010096|ref|YP_001304839.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
gi|149938520|gb|ABR45217.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
Length = 382
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 74/285 (25%), Positives = 118/285 (41%), Gaps = 33/285 (11%)
Query: 125 KFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNT-TIGKQLSFLKWFLRWAF 183
+ ++ NHL ++ + D + ++ +LR +++ TI L L A
Sbjct: 117 RLRSLANHLRDYMPQCLLKDIDTGFVKGFIAHLRKQPYLKSDFTIHGYYRLLNVTLNKAV 176
Query: 184 KKGVHQNN---AYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQ 240
KKG+ +N + D+ + K T + +LT +EL RL V+ FLF
Sbjct: 177 KKGLILSNPCGSLDTDEKPHKPTSLRT-YLTLEELKRLIR-----TDCVCPEVKKAFLFC 230
Query: 241 CFTGLRYSDVFNLRRSDIKDD-----HIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFE 295
CF GLR SD+ LR D++ + +++ KT +++ + L+ E
Sbjct: 231 CFCGLRISDLTALRWEDMQKEGNDKFRLQIIQRKTKEAIYLPLSE--------------E 276
Query: 296 DDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTF 355
K LP N+ ND L + L + I KG + K H R TF
Sbjct: 277 AIKYLPARENENDNDRLGLIFHLPSLT--IICQVLKGWTLAAGIKNKKVTF--HVSRHTF 332
Query: 356 ICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFN 400
+LALGI V K GH + + + Y I D K A+ +FN
Sbjct: 333 ATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKRQAIDRFN 377
>gi|153809553|ref|ZP_01962221.1| hypothetical protein BACCAC_03871 [Bacteroides caccae ATCC 43185]
gi|149127798|gb|EDM19022.1| hypothetical protein BACCAC_03871 [Bacteroides caccae ATCC 43185]
Length = 116
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 26/122 (21%)
Query: 282 SKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTP 341
+ +IL+KYK+VA K+LPV++NQ+MN YLKE+A++ G+ +
Sbjct: 10 AASILEKYKNVAECTGKLLPVLSNQRMNSYLKEIADVCGLQKN----------------- 52
Query: 342 KYALLGTHAGRRTF---ICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSK 398
L TH+ R ++ IC LA G+ + V K GH+D K Y + D M K
Sbjct: 53 ----LCTHSARHSYATSIC--LANGVSMENVAKMLGHADTSVTKHYARVLDQNIFKDMQK 106
Query: 399 FN 400
N
Sbjct: 107 VN 108
>gi|150005457|ref|YP_001300201.1| integrase [Bacteroides vulgatus ATCC 8482]
gi|149933881|gb|ABR40579.1| integrase [Bacteroides vulgatus ATCC 8482]
Length = 400
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 80/313 (25%), Positives = 134/313 (42%), Gaps = 49/313 (15%)
Query: 14 TGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEY-------YTEIQSIFKRFEVE 66
T YRI ++WD + + L + SE A LL T +Q I E
Sbjct: 35 TSYRIMPSEWD-------DSTGSLLISTQSECKARLLLIRDQTNWEMTRLQGIINDLERT 87
Query: 67 DVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKF 126
V T + I +F + P E++ ++F Q + +E RQ T E +
Sbjct: 88 GVEYTIDDIVASFRKI---------PSVESV-FNFMQRCINKLE---RQKR--GRTAEGY 132
Query: 127 AAVKNHLTNFR--EGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFK 184
+ N FR E L+FE FD + Y YL++ ++N+T S+ R +
Sbjct: 133 TSTMNSFIQFRKNEDLSFEAFDSELMEMYEAYLKEKGLVKNST-----SYYMRIWRSVYN 187
Query: 185 KGVHQNNAYDS------YKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFL 238
V Q D Y K+ ++ + F + ++E + Q LE RD+FL
Sbjct: 188 LAVEQGYTTDKKPFKHVYTGIDKTVKRAVPFKI---IKMIKELDLSFEPQ-LELARDIFL 243
Query: 239 FQCFT-GLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDD 297
F +T G+ + D+ +L++S++++ + + KT L I + I+DKYKD E
Sbjct: 244 FSFYTRGMSFIDMAHLKKSNLQNGILTYSRKKTGQRLTILWEELMQEIVDKYKDDTSE-- 301
Query: 298 KVLPVITNQKMND 310
+LP++ +ND
Sbjct: 302 YLLPILRYCDIND 314
>gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae B33]
gi|126520513|gb|EAZ77736.1| integrase [Vibrio cholerae B33]
Length = 385
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 76/336 (22%), Positives = 143/336 (42%), Gaps = 51/336 (15%)
Query: 82 LHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVKNHLTNF--REG 139
L S+ + L FF +D + + + + S + + + +HL + R
Sbjct: 75 LESETSKHKLEDRTKLSASFFDYYDSVTDS---KASGSKSNYSIWVSAGHHLRRYHGRAE 131
Query: 140 LTFEFFDERGLNDYVGYL------RDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAY 193
LTFE D L + YL + + + T+ + ++ L A+++G+ ++N
Sbjct: 132 LTFEDIDRAFLEGFKTYLLKSATTKSDQLLSRNTVSSYFNKIRAALNQAYQEGIIRDNPV 191
Query: 194 DSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNL 253
+ K T +++ +LT +E+ + K L+R FLF C TGLR+SD+ L
Sbjct: 192 RTVKSVKPETNQRV-YLTLEEIKAMA--KAECRYDVLKRA---FLFSCTTGLRWSDIQKL 245
Query: 254 RRSDIKD---DHIEV----TTVKTSDSLI--IELNNHSKAILDKYKDVAFEDDKVLPVIT 304
S++++ H + ++ + + ++L + + ++ + KD D++V +
Sbjct: 246 VWSEVEEFEQGHFRIIFKQKKIQNRGTALQYLDLPDSAVRLMGERKD---NDERVFKALR 302
Query: 305 -NQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALG 363
+ N L A LAGI + + HAGR +F N LA G
Sbjct: 303 YSSYTNVALLHWAMLAGITKHVT---------------------FHAGRHSFAVNQLARG 341
Query: 364 IPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
+ + + GHS+ K + Y DI D + +AM F
Sbjct: 342 LDIYSLSRLLGHSELKTTEIYADILDQRRRDAMRSF 377
>gi|150009561|ref|YP_001304304.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
gi|149937985|gb|ABR44682.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
Length = 387
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 72/275 (26%), Positives = 116/275 (42%), Gaps = 44/275 (16%)
Query: 146 DERGLNDYVGYLRDVK-EMRNTTIGKQLS---------FLKWFLRWAFKKGVHQNNAYDS 195
D+ + D++ YL D + E G++LS LK L A + N S
Sbjct: 137 DKYYIMDFIEYLEDAQIEHTQRNKGRKLSKNSQAMYFKCLKMVLDEAVSDDIIPLNPILS 196
Query: 196 YKPKLKSTQKKII---FLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFN 252
K K + + +K FLT DEL R P+ E ++ F+ C TGLR+ D+
Sbjct: 197 IKKKYRPSAEKAPKREFLTEDELRRFAGTDHPN-----ELLKRAFMIGCLTGLRHCDIKQ 251
Query: 253 LRRSDIK--DDHIEVTTV---KTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQK 307
++ S+I + IE ++ KT+D + I LN + + L + + + ED +IT +
Sbjct: 252 MKWSNIGVVKNGIECISLVQEKTNDPVDIPLNENIRKWLPEQGNASMEDLVFSGLITLGR 311
Query: 308 MNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGIPPQ 367
N+ L + AE AGI++ L H R TF A+A +
Sbjct: 312 SNEILPKWAEKAGINKH---------------------LTFHCSRHTFAVLAIAKKVDIY 350
Query: 368 VVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQL 402
V K GH + Y ++ D+ K AM ++
Sbjct: 351 TVSKLLGHQSITVTEIYTEVLDNSKKEAMEAIGKI 385
>gi|119357861|ref|YP_912505.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
266]
gi|119355210|gb|ABL66081.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
266]
Length = 419
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 78/301 (25%), Positives = 122/301 (40%), Gaps = 39/301 (12%)
Query: 106 DDFVEDCGRQNNWTDSTFEKFAAVKNHLTNFREGLT-FEFFDERGLNDYVGYLRDVKEMR 164
DDF+E R + K+A V L F G+ F + L + YL ++ +
Sbjct: 70 DDFIEFYRRYAE--KDNYPKYANVLPILRRFSLGVIHFASLNSAWLERFKFYLLSLESIS 127
Query: 165 NTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIP 224
T G L+ +K LR AF++G + + P +K T + FL +++ L + K
Sbjct: 128 QNTAGGYLTSVKTVLRQAFREG-YLIEDISAKVPGIKKTDIQRHFLPVEQVEALHKAK-- 184
Query: 225 SNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKD----DHIEVTTVKTSDSLIIELNN 280
SN E ++ FLF CF+GLR SDV L I +I+ KT + L+
Sbjct: 185 SNN---EMIKQAFLFACFSGLRLSDVQALYWEQISQINGAPYIQFRQRKTCQYENLPLSE 241
Query: 281 HSKAILDKYKDVAFE-----DDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNER 335
+ IL + + + E DKV + + +++ L+ AG+ P +
Sbjct: 242 QAATILQEVRALHAEYAPSGSDKVFILPSRERIAQVLEVWGIRAGL--PFK--------- 290
Query: 336 IDDVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANA 395
L H R TF L G V K GH + K + Y I D K +A
Sbjct: 291 ----------LHFHVSRHTFATMNLTAGCDLYTVSKLLGHREIKTTQIYGRIVDSKKLDA 340
Query: 396 M 396
+
Sbjct: 341 V 341
>gi|60682252|ref|YP_212396.1| putative recombinase/integrase [Bacteroides fragilis NCTC 9343]
gi|60493686|emb|CAH08475.1| putative recombinase/integrase [Bacteroides fragilis NCTC 9343]
Length = 379
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 65/277 (23%), Positives = 119/277 (42%), Gaps = 24/277 (8%)
Query: 118 WTDSTFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKW 177
+T +F+KFA + LTFE + +Y YL + R TI + L+
Sbjct: 101 YTLHSFQKFAG--------KASLTFEEITPESIKEYEQYLI-LNGKRYNTISLYMRMLRS 151
Query: 178 FLRWAFKKGVHQNNAYDSYKPKL---KSTQKKIIFLTWDELNRLREFKIPSNKQALERVR 234
A ++ + N + ++ + T K+ I ++RL E N + L+ R
Sbjct: 152 ICNQASEQNIASLNTRELFENVFIGNEPTAKRAISPVL--ISRLLEADFSKNSR-LDFAR 208
Query: 235 DVFLFQCF-TGLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVA 293
D+FL + G+ + D+ +LR++D++ + + KT L + + N +K IL KY +
Sbjct: 209 DLFLLSFYLRGIPFVDLVHLRKTDVQGNMLVYFRQKTGQQLTVIIENCAKVILRKYASLC 268
Query: 294 FEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRR 353
E +LPVI+ + + + L + Y K +I + L ++ R
Sbjct: 269 KESVYLLPVISAAGEEGHKQYRSAL--------RVYNKRLNQISGILKLKTPLTSYVARH 320
Query: 354 TFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADD 390
++ AL G+P V+ GH+ K Y+ D+
Sbjct: 321 SWATTALQKGVPVSVISAGMGHASEKVTYIYLASFDN 357
>gi|53714058|ref|YP_100050.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52216923|dbj|BAD49516.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 379
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 24/277 (8%)
Query: 118 WTDSTFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKW 177
+T +F+KFA + LTFE + +Y YL + R TI + L+
Sbjct: 101 YTLHSFQKFAG--------KASLTFEEITPESIKEYEQYLI-LNGKRYNTISLYMRMLRS 151
Query: 178 FLRWAFKKGVHQNNAYDSYKPKL---KSTQKKIIFLTWDELNRLREFKIPSNKQALERVR 234
A ++ + N + ++ + T K+ I + ++RL E N + L+ R
Sbjct: 152 ICNQASEQNIASLNTRELFENVFIGNEPTAKRAI--SPAIISRLLEADFSKNSR-LDFAR 208
Query: 235 DVFLFQCF-TGLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVA 293
D+FL + G+ + D+ +LR++D++ + + KT L + + N +K IL KY +
Sbjct: 209 DLFLLSFYLRGIPFVDLVHLRKTDVQGNMLVYFRQKTGQQLTVIIENCAKVILRKYASLC 268
Query: 294 FEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRR 353
E +LPVI+ + + + L + Y K +I + L ++ R
Sbjct: 269 KESVYLLPVISAAGEEGHKQYRSAL--------RVYNKRLNQISGILKLKTPLTSYVARH 320
Query: 354 TFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADD 390
++ AL G+P V+ GH+ K Y+ D+
Sbjct: 321 SWATTALQKGVPVSVISAGMGHASEKVTYIYLASFDN 357
>gi|83855510|ref|ZP_00949039.1| tyrosine type site-specific recombinase [Croceibacter atlanticus
HTCC2559]
gi|83849310|gb|EAP87178.1| tyrosine type site-specific recombinase [Croceibacter atlanticus
HTCC2559]
Length = 405
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 91/419 (21%), Positives = 157/419 (37%), Gaps = 71/419 (16%)
Query: 8 KRIEFTT-GYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVE 66
+R +F + ++ +WD DKQ+VK K Q+++ +NA + + + + E
Sbjct: 29 RRTKFISLSLKLHPNEWDDDKQKVK-----KNHQNSTRLNAYISKKVADAEGEIADLERR 83
Query: 67 DVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKF 126
+ + +IK+A KP+ FD + C + + T +
Sbjct: 84 NQSTSARRIKEAIKG--KPL---------------INFFDFAFDRCEKLKDTV--TLSTY 124
Query: 127 AAVKNHLTNFRE-----GLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRW 181
+ KN++ F L F+ L +Y Y NTTI L R
Sbjct: 125 RSYKNNIEKFERFVGHRELMFDDITATTLKNYASYCSSKLGNNNTTINYAFRILNLMFRE 184
Query: 182 AFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQC 241
A ++ + N K K+K + +L ++ + ++P +A + ++D+F+F
Sbjct: 185 AKREDLISNELAPFTKFKVKKNKTTKRYLNAEQFDAFMNLEVPDKHKA-QVIKDMFIFSV 243
Query: 242 FTG-LRYSDVFNL--RRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDK 298
F+G LR+ DV L + D K+ I T KT I + + IL+KY
Sbjct: 244 FSGGLRFGDVIELQWKNYDKKNHRITKTIRKTKRQHSIRIGQKAIDILEKYASY------ 297
Query: 299 VLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGT---------- 348
+ ND + A+ I + Y+K E +T + L
Sbjct: 298 ------DNSQNDIIFPFAK-------IDEQYFKDREHRSLITNRAISLSNMYLSRMGKQL 344
Query: 349 --------HAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKF 399
H R TF AL G+ + V K H+D + Y I NA+ K+
Sbjct: 345 ELPFNLSFHISRHTFATRALNNGMRIEHVSKLMDHTDIGITQVYAKIISSELDNAVDKY 403
>gi|120435520|ref|YP_861206.1| phage integrase family protein [Gramella forsetii KT0803]
gi|117577670|emb|CAL66139.1| phage integrase family protein [Gramella forsetii KT0803]
Length = 443
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 64/268 (23%), Positives = 108/268 (40%), Gaps = 44/268 (16%)
Query: 138 EGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYD--S 195
+ L F DE + Y + + TI QL F++ A K+GV Y
Sbjct: 180 DNLRFRDIDESFIRKYKTFCSSYLNHKPRTITNQLIFIRTLYNIAIKEGVIAQKYYPFAG 239
Query: 196 YKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQC-FTGLRYSDVFNLR 254
K K++ + I L +E+ ++ ++ + + +++LF F G+R SDV L+
Sbjct: 240 EKEKIRISSGNKIGLNVEEIEKIESLEL-EKYRTIWHTHNIWLFSFYFAGMRISDVIKLK 298
Query: 255 RSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYK-DVAFEDDKVLPVI---------- 303
SD KD+ + K L +++ + ++ I+D Y+ D F + + P +
Sbjct: 299 WSDFKDNRLYYVMEKNGKPLSLKIPDKARIIIDYYRPDKKFNNGYLFPFLREVDQTQAEQ 358
Query: 304 -------TNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFI 356
T + +N YLK +A+L GID+ L H R +F
Sbjct: 359 IYTRTKSTTKLLNKYLKRIAKLCGIDKT---------------------LSNHIARHSF- 396
Query: 357 CNALALGIPPQVVMKWTGHSDYKAMKPY 384
N I P ++ K HSD K Y
Sbjct: 397 GNIAGDRIHPLMLQKLYRHSDLKTTLNY 424
>gi|29349423|ref|NP_812926.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29341332|gb|AAO79120.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 402
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 66/260 (25%), Positives = 124/260 (47%), Gaps = 18/260 (6%)
Query: 142 FEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRWAFKKGV-HQNNAYDSYKPKL 200
F+ F+ L +Y YL+ NT I + LK A + G+ Q + + S +
Sbjct: 152 FDQFNADLLAEYEAYLKGRGNTLNT-ISFYMRILKAVYNRAVEDGLTEQRHPFKSVYTGV 210
Query: 201 KSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFT-GLRYSDVFNLRRSDIK 259
+ T K+ L+ +++ R++ + S L+ RD+FLF +T G+ + D+ LR+ D++
Sbjct: 211 EKTIKRA--LSLNDIRRIKGLDL-SLMPNLDYTRDMFLFSFYTRGMSFIDMAYLRKKDLQ 267
Query: 260 DDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELA-EL 318
+ + KT L I+ + ILDKY + E + +LP+IT ++ +DY K+ A EL
Sbjct: 268 NGTLSYRRRKTGQRLFIKWERCMQEILDKY--LVNETEYLLPIIT-KRDDDYRKQYANEL 324
Query: 319 AGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDY 378
++ ++ K +++D P L + GR ++ A + +P V+ + GH
Sbjct: 325 HRVNHLLK----KIGKQLDLPIP----LTMYVGRHSWASIAKSRNVPISVISEGMGHDSE 376
Query: 379 KAMKPYIDIADDIKANAMSK 398
+ Y+ D + +K
Sbjct: 377 NTTQIYLASLDTTVVDKANK 396
>gi|150007898|ref|YP_001302641.1| transposase [Parabacteroides distasonis ATCC 8503]
gi|149936322|gb|ABR43019.1| transposase [Parabacteroides distasonis ATCC 8503]
Length = 402
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 48/282 (17%)
Query: 122 TFEKFAAVKNHLTNFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRW 181
+FE+F N + + E D + Y +L+ NT+ + + R
Sbjct: 140 SFERF-------LNDQADIPLEAMDSNLMIAYESWLKGTGICPNTSSYYMRNLRAIYNRA 192
Query: 182 AFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQC 241
+ V Q N + + T+K+ + L D + +R+ K+ K++L RD+FLF
Sbjct: 193 VEQGFVTQQNPFKHVYTGIDKTKKRAVSL--DVIREIRDLKL--TKKSLVFARDIFLFSF 248
Query: 242 FT-GLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVL 300
+T G+ + D+ L++ D+++ + KT L I+ + ++DKY F+ +L
Sbjct: 249 YTRGMSFVDMAFLKKQDLQNGILAYRRNKTGQQLFIKREKTMQELIDKYD--TFDTPYLL 306
Query: 301 PVITN-------------QKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLG 347
PVI N ++N LK++ +L G+D P L
Sbjct: 307 PVIRNNGVDEWHQYQNAAHRINRNLKQIGKLIGLDIP---------------------LT 345
Query: 348 THAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
T+ R + A + +P V+ K GH+ + + Y+ D
Sbjct: 346 TYVARHAWASIAQSKNVPLSVISKALGHNSEQTTRIYLSSLD 387
>gi|150004653|ref|YP_001299397.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
gi|149933077|gb|ABR39775.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
Length = 312
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 68/273 (24%), Positives = 109/273 (39%), Gaps = 33/273 (12%)
Query: 2 RVNFASKRIEFTTGYRIDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFK 61
R+ + +F+ ID WD RV + +A E N L + I ++
Sbjct: 27 RITVDGSQTQFSCKLTIDPKLWDTKGGRVTGRST-----AALETNRMLDKMRVRINKHYQ 81
Query: 62 RFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQ---NNW 118
D T E++K AF L E + QVF ED +Q
Sbjct: 82 EIMERDNFVTAEKVKNAFLGL------------EHRYHTLMQVFQQHNEDYAKQVEAGMK 129
Query: 119 TDSTFEKFAAVKNHLTNFR------EGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQL 172
T K+ V HL F + + + ++D+ +LR K T+ +
Sbjct: 130 AKGTLLKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTDKHCCTNTVWLYV 189
Query: 173 SFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALER 232
L+ + A + + Y+ K + T + FLT DE+ L E K+ + KQ L
Sbjct: 190 CPLRTMVFIAINNEWLTRDPFREYEIKKEETTRS--FLTKDEIRLLMEGKLKNAKQEL-- 245
Query: 233 VRDVFLFQCFTGLRYSDVFNLRRSDIK---DDH 262
RD++LF FTGL ++D+ NL +I+ D+H
Sbjct: 246 YRDLYLFCAFTGLSFADMRNLTEENIRTYFDEH 278
>gi|154491051|ref|ZP_02030992.1| hypothetical protein PARMER_00970 [Parabacteroides merdae ATCC
43184]
gi|154088799|gb|EDN87843.1| hypothetical protein PARMER_00970 [Parabacteroides merdae ATCC
43184]
Length = 582
Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 21/192 (10%)
Query: 208 IFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSD-IKDDHIEVT 266
I LT +E+++L ++ + K L RD+F+ QC G R SDV L D I D+ V
Sbjct: 239 IVLTEEEIDKLANLQLDNEK--LIETRDLFVVQCLAGTRKSDVIKLFEDDYIYDERRNVF 296
Query: 267 TVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIR 326
+KT + + KA DK K + + K L N L+++A LA +D
Sbjct: 297 VIKTQKKGV---DAFIKA--DKIKPILSKYPKGLEEPVTSTYNSRLRKIALLANLD---- 347
Query: 327 QTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAM-KPYI 385
R+ D P Y + +H GR TF+ N+ GI V+ GH K + + Y+
Sbjct: 348 --------RLVDGKPIYEQMRSHIGRYTFVTNSFLNGISKDVIKYMVGHKSTKMVDEVYL 399
Query: 386 DIADDIKANAMS 397
++ D K + ++
Sbjct: 400 QLSMDNKIDIVA 411
>gi|153809550|ref|ZP_01962218.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185]
gi|149127795|gb|EDM19019.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185]
Length = 447
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 89/408 (21%), Positives = 165/408 (40%), Gaps = 60/408 (14%)
Query: 3 VNFASKRIEFTTGYRIDSAKWDADKQRV-----KNGCSNKLKQSASEINA--SLLEYYTE 55
V K +++TG I+ WDA K + K G N + +E+N SLLE E
Sbjct: 28 VTLDGKVSQYSTGLEIEPDLWDAKKGKAFADGRKTG--NITGEKRNELNRLNSLLEALEE 85
Query: 56 -IQSIFKRFEVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGR 114
+S +K+ + E IK A K + +FD+ E+ +
Sbjct: 86 KAKSAYKKNVDSYGFVSAEIIKNAVTG------------KSDVKETLLSLFDEHNEEYAK 133
Query: 115 QN--NWTDSTFEKFAAVKNHLTNFR------EGLTFEFFDERGLNDYVGYLRDVKEMRNT 166
+ + T ++ ++ + H++NF E + + + D+ Y V +++ +
Sbjct: 134 RVGIDRTRHSYVRYLTTRKHISNFLKFKYDLEDIPLRSLTMKFMTDFTFYFSTVLQLKVS 193
Query: 167 TIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSN 226
L L R A KK + + + + +K + + L ++ +L ++P+
Sbjct: 194 AYNDYLILLHKMTRLALKKHILKRDPFAGHKIEKVPVNHR--HLNREQFEKLLNARLPTY 251
Query: 227 KQALERVRDVFLFQCFTGLRYSDVFNLRRSDI--KDDH---IEVTTVKTSDSLIIELNNH 281
+ L RD+F+F FTG+ +D+ NL +I K+D I + KT I+L +
Sbjct: 252 R--LCHTRDLFVFSVFTGIGRADLANLTEDNIITKEDGSKWIHIARQKTKAECHIKLLDI 309
Query: 282 SKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTP 341
I++KYK +D ++ V + LK +AE + T+Y+
Sbjct: 310 PLRIIEKYKGEG-KDGRLFYVPQTCNLCRSLKIIAEQCNLG--CHLTFYQARHSF----- 361
Query: 342 KYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIAD 389
T IC L+ G+P + + K GH + + Y +I +
Sbjct: 362 -----------ATLIC--LSNGVPIETISKMMGHYSIRTTQIYAEITN 396
>gi|153808763|ref|ZP_01961431.1| hypothetical protein BACCAC_03063 [Bacteroides caccae ATCC 43185]
gi|149128589|gb|EDM19807.1| hypothetical protein BACCAC_03063 [Bacteroides caccae ATCC 43185]
Length = 402
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 92/400 (23%), Positives = 164/400 (41%), Gaps = 40/400 (10%)
Query: 8 KRI--EFTTGYRIDSAKWDADKQRV--KNGCSNKLKQSASEINASLLEYYTEIQSIFKRF 63
KRI + TGY++ A+WDA V + S + + SLLE +++I R
Sbjct: 27 KRIVRQIHTGYKLFPAEWDAVHSEVVLSSVTSESRRDYLLSLKNSLLEDSVRLKNIITRL 86
Query: 64 EVEDVMPTPEQIKKAFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTF 123
E + T + + + + A S E F +++ + T
Sbjct: 87 ERSGIAYTSDSLVELYCA-----STEHS--------GFISFTLHLIKELNQIGK--HRTA 131
Query: 124 EKFAAVKNHLTNFREG--LTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQLSFLKWFLRW 181
E + N FR+G + E D + Y YL+ NTT + L+
Sbjct: 132 ETYMTTLNSFVRFRKGKDVLLEEVDSSLMMKYESYLKSTGICPNTT-SYYMRNLRAIYNR 190
Query: 182 AFKKGVH-QNNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQ 240
A +KG+ Q + + + T K+ I L +E+ RL+E + + +L RD+F+F
Sbjct: 191 AVEKGLTVQRSPFKYVYTGIDKTVKRAIPL--EEIRRLKELDL-TKSPSLAYARDIFMFS 247
Query: 241 CFT-GLRYSDVFNLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKV 299
+T G+ + D+ LR+ D+++ + KT L I+ + I+D+Y +
Sbjct: 248 FYTRGMSFIDMAFLRKKDLQNGILSYRRQKTGQQLFIKWEKPMQEIIDRYDTQG--SPYL 305
Query: 300 LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNA 359
LP+I + ++ D K+ + A + + Q K R+ P L T+ R + A
Sbjct: 306 LPIIRDMEV-DGRKQYKKTAHL---VNQKLKKLGMRLGVSIP----LTTYVARHAWASIA 357
Query: 360 LALGIPPQVVMKWTGHSDYKAMKPYIDIADDI---KANAM 396
+ I V+ + GH + Y+ D KAN++
Sbjct: 358 KSKNISLSVISEAMGHDSENTTRIYLASLDTSLVDKANSL 397
>gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
Length = 379
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 74/290 (25%), Positives = 121/290 (41%), Gaps = 52/290 (17%)
Query: 128 AVKNHLTNFR-EGLTFEFFDERGLNDYVGYLRDVKEM-----RNTTIGKQLSFLKWFLRW 181
AV HL + G+ D+ L ++ YL+ K+ + + Q +LK LR+
Sbjct: 114 AVVCHLERYTPNGILLRKVDKTYLLGFIDYLKKTKQEHCKKEKTLHVNTQFYYLK-TLRY 172
Query: 182 AFKKGVHQ--------NNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERV 233
+ V + N + KPK T++ +LT EL RL P L
Sbjct: 173 CLNRAVSEDYITVNPMNKIKNEDKPKRNRTERD--YLTIKELTRL--VHTPFYNTLL--- 225
Query: 234 RDVFLFQCFTGLRYSDVFNLRRSDIKDDH-----IEVTTVKTSDSLIIELNNHS-KAILD 287
R FLF CF GLR+ D+ LR DI+ D + + KT +++ + L + + K + D
Sbjct: 226 RKAFLFSCFCGLRHCDIIALRWEDIRYDENGNALLSIIQKKTKEAISLPLCSEAIKHLPD 285
Query: 288 KYKDVAFEDDKVLP-VITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALL 346
+ A E +KV +++ + N L + E AGI + + T+
Sbjct: 286 RGN--APETEKVFAGLVSLGRSNVILHKWVEQAGISKHV--TF----------------- 324
Query: 347 GTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAM 396
H R T L LG+ V K GH++ + + Y + D+ K A+
Sbjct: 325 --HTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAI 372
>gi|53712967|ref|YP_098959.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|60681179|ref|YP_211323.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
gi|52215832|dbj|BAD48425.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|60492613|emb|CAH07385.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
Length = 406
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 69/283 (24%), Positives = 119/283 (42%), Gaps = 46/283 (16%)
Query: 132 HLTNF-REGLTFEFFDERGLNDYVGYLRDV-----KEMRNTTIGKQLSFLKWF---LRWA 182
HL ++ + G+ D++ + +V YL+ K ++N + Q+ + K F L A
Sbjct: 145 HLQHYDKMGIRLRQVDKKYILGFVEYLKTATQKHCKSVKNISANTQVHYYKVFHHCLNSA 204
Query: 183 FKKGVHQNNAYDSYK----PKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFL 238
+ +N D K PK + T++ FLT DEL L + + ++ FL
Sbjct: 205 VIDEIITSNPMDKIKNEEKPKRRRTERA--FLTIDELKILSQTDFHN-----ATLKKAFL 257
Query: 239 FQCFTGLRYSDVF-----NLRRSDIKDDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVA 293
F CF GLR+SD+ NL++ + + +T KT + L + L+ + L V
Sbjct: 258 FSCFCGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILSLPLSKEALKQLPVRGKVP 317
Query: 294 FEDDKVLPVITNQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRR 353
+ +I+ + N+ L + A AGI + I T+ H+ R
Sbjct: 318 DTEKVFKGLISLGRTNEILPKWAAKAGIQKHI--TF-------------------HSARH 356
Query: 354 TFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAM 396
T + LG V K GH++ + + Y I D+ K A+
Sbjct: 357 THATMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESKEKAI 399
>gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
Length = 405
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 76/321 (23%), Positives = 136/321 (42%), Gaps = 51/321 (15%)
Query: 97 LPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVKNHLTNF--REGLTFEFFDERGLNDYV 154
L F+ +D + + + S + + + HL ++ R LTFE D++ L +
Sbjct: 91 LASSFYDYYDKLT---ASKESGSSSNYSIWISAGKHLRSYHGRAELTFEEIDKKFLEGFR 147
Query: 155 GYL------RDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKP-KLKSTQKKI 207
YL + ++ T + ++ L AF++G+ ++N K K ++TQ+
Sbjct: 148 KYLLEEPLTKSQSKLAKNTASSYFNKVRAALNEAFREGIIRDNPVQRVKSVKAENTQRT- 206
Query: 208 IFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDI---KDDHIE 264
+LT DE+ + K L+R FLF C TGLR+SD+ L +I +D H
Sbjct: 207 -YLTLDEVRAMT--KAECRYDVLKRA---FLFSCTTGLRWSDIQKLTWKEIEEFQDGHYR 260
Query: 265 V-----TTVKTSDSLI-IELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDYLKELAEL 318
+ + +SL+ ++L + + ++ + +D A K L + N L A L
Sbjct: 261 IIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERVFKGLKY--SSYTNVALLHWAML 318
Query: 319 AGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDY 378
AG+ + + T+ H GR TF L G+ + + GHS+
Sbjct: 319 AGVQKHV--TF-------------------HVGRHTFAVAQLNRGVDIYSLSRLLGHSEL 357
Query: 379 KAMKPYIDIADDIKANAMSKF 399
+ + Y DI + + AM F
Sbjct: 358 RTTEIYADILESRRVTAMRGF 378
>gi|156860014|gb|EDO53445.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
Length = 388
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 85/398 (21%), Positives = 157/398 (39%), Gaps = 64/398 (16%)
Query: 18 IDSAKWDADKQRVKNGCSNKLKQSASEINASLLEYYTEIQSIFKRFEVEDVMPTPEQIKK 77
+ +AK+D K+G + A +IN + + I +F + + T + +
Sbjct: 40 VPAAKFDE-----KSGLLKGNSKEAKDINLIVSNLKARVNDILVKFRLRNQALTKDIFMR 94
Query: 78 AFNALHKPVSEEPKPKKEALPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVKNHLT--- 134
+N P D+ + F DFV +++ T S + K+HL+
Sbjct: 95 EYNN----------------PSDY-KTFHDFV----KEHMKTYSRRIEMGTFKHHLSCMK 133
Query: 135 ---NFREGLTFEFFDERGLNDYVGYLRDVKEMRNTTIGKQ--LSFLKWFLRWAFKKGVHQ 189
+ E L F+ L DY+ Y++ KE+ NT I Q +S +K ++ A++KG +
Sbjct: 134 KFKAYNELLQFQDLTPDYLTDYLIYMK--KELGNTEITAQRNMSTIKIYVTAAYRKGYIE 191
Query: 190 NNAYDSYKPKLKSTQKKIIFLTWDELNRLREFKIPSN-KQALERVRDVFLFQCFTGLRYS 248
N + + +K + + +LT +EL + + + L+ FLF CFT + +
Sbjct: 192 ENPFQEF--HIKRIKSDVDYLTEEELMQFVQLYYQRTLPEKLQLTLAFFLFMCFTSMHIT 249
Query: 249 DVFNLRRSDIKDDHIEVTTVKTS----DSLIIELNNHSKAILDKYKDVAFEDDKVLPVIT 304
D + +D + VK + + I + ++ +L+++ + E V
Sbjct: 250 DARMFCIEQVNNDVLTYYRVKNRNCKPEPIKIPMPVPAEKLLEEWAEGREEGRLFRNVQC 309
Query: 305 NQKMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGI 364
+Q +N LK +A+ GI++ I GR TF L
Sbjct: 310 DQVVNRQLKAIAKELGINKKI---------------------SAKTGRHTFATIYLRKTK 348
Query: 365 PPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQL 402
+ K GHS+ + Y + D+ K M FN
Sbjct: 349 DLSSLQKLLGHSNIRETMIYAHVMDESKREGMQCFNSF 386
>gi|120600872|ref|YP_965446.1| phage integrase family protein [Shewanella sp. W3-18-1]
gi|120560965|gb|ABM26892.1| phage integrase family protein [Shewanella sp. W3-18-1]
Length = 405
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 75/323 (23%), Positives = 135/323 (41%), Gaps = 55/323 (17%)
Query: 97 LPYDFFQVFDDFVEDCGRQNNWTDSTFEKFAAVKNHLTNF--REGLTFEFFDERGLNDYV 154
L F++ +D + + + S + + + HL ++ R LTFE D++ L +
Sbjct: 91 LASSFYEYYDKLT---ASKESGSSSNYSIWISAGKHLRSYHGRAELTFEELDKKFLEGFR 147
Query: 155 GYL------RDVKEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKP-KLKSTQKKI 207
YL + ++ T + ++ L A+++G+ ++N K K ++TQ+
Sbjct: 148 KYLLEEPLTKSKSKLAKNTASSYFNKVRAALNEAYREGIIRDNPVQRVKSVKAENTQRT- 206
Query: 208 IFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDI---KDDHIE 264
+LT DE+ + + L+R FLF C TGLR+SD+ L +I +D H
Sbjct: 207 -YLTLDEVRAMT--RAECRYDVLKRA---FLFSCTTGLRWSDIQKLTWKEIEEFQDGHYR 260
Query: 265 V----TTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQKMNDY----LKELA 316
+ T + + + ++ L+ A+ K + DK V K + Y L A
Sbjct: 261 IIFKQTKLLNAGNSLVYLDLPDSAV----KLMGERQDKTERVFKGLKYSSYTNVALLHWA 316
Query: 317 ELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHS 376
LAG+ + + T+ H GR TF L G+ + + GHS
Sbjct: 317 MLAGVQKHV--TF-------------------HVGRHTFAVAQLNRGVDIYSLSRLLGHS 355
Query: 377 DYKAMKPYIDIADDIKANAMSKF 399
+ + + Y DI + + AM F
Sbjct: 356 ELRTTEIYADILESRRVTAMRGF 378
>gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformis]
gi|145308091|gb|AAR05648.2| integrase [Bacteroides uniformis]
Length = 377
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 66/276 (23%), Positives = 115/276 (41%), Gaps = 38/276 (13%)
Query: 138 EGLTFEFFDERGLNDYVGYLRDV-----KEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNA 192
E + + D+ +Y+ YL+ K + N T+ L L A + + ++N
Sbjct: 127 ERMLMDQIDKTFCQNYLDYLQSEYRSRGKRVSNYTLHTYYRVLNGALNAAVRAEIIKSNP 186
Query: 193 YD--SYKPKLKSTQKKIIFLTWDELNRLREFKIPSNKQALERVRDVFLFQCFTGLRYSDV 250
+ S K++ + K ++T +E+ L + + E V+ +LF CF GLR SD+
Sbjct: 187 FTKISKSEKIRLPESKRSYMTIEEVRALIATPMKN-----ESVKGAYLFSCFCGLRISDI 241
Query: 251 FNLRRSDIKDD----HIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQ 306
L+ D+ D + V+ KT + + + L+ + + D DD V + +
Sbjct: 242 IKLQWKDVFVDRGQYRLSVSMQKTKEPIYLPLSPEALKWMPARGDKT-PDDHVFDLPSPA 300
Query: 307 KMNDYLKELAELAGIDEPIRQTYYKGNERIDDVTPKYALLGTHAGRRTFICNALALGIPP 366
+N +K A+ AGI++ R T+ H R TF L LG
Sbjct: 301 MVNILIKPWAKAAGINK--RFTF-------------------HTARHTFATMMLTLGADL 339
Query: 367 QVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQL 402
K GH+D K + Y I + K +A++ N L
Sbjct: 340 YTTSKLLGHADVKMTQVYAKIINQKKDDAVNLVNGL 375
>gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
Length = 381
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 63/249 (25%), Positives = 106/249 (42%), Gaps = 32/249 (12%)
Query: 161 KEMRNTTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKP--KLKSTQKKIIFLTWDELNRL 218
K++ N T+ L L A +K + N ++ + K++ + ++T +E+ L
Sbjct: 156 KDISNYTLHNYYRALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQAL 215
Query: 219 REFKIPSNKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKDD----HIEVTTVKTSDSL 274
+ +P + E V+ +LF CF GLR SD+ L+ D+ D + V+ KT + +
Sbjct: 216 IDTPMP--HEEYEIVKCAYLFSCFCGLRISDIIKLKWKDVFVDRGQYRLAVSMKKTKEPI 273
Query: 275 IIELNNHSKAILDKYKDVAFEDDKV-LPVITNQKMNDYLKELAELAGIDEPIRQTYYKGN 333
+ L+ + + + + ED+ LP +M LK A+ AGI + R +Y
Sbjct: 274 YLPLSPEALKWMPERGGKSSEDNVFDLPSANTIRMQ--LKPWAKAAGISK--RFSY---- 325
Query: 334 ERIDDVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKA 393
H R TF L LG V K GH+D K + Y I + K
Sbjct: 326 ---------------HTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKD 370
Query: 394 NAMSKFNQL 402
A++ N L
Sbjct: 371 EAVNLVNGL 379
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,482,963,240
Number of Sequences: 5470121
Number of extensions: 63607547
Number of successful extensions: 169515
Number of sequences better than 1.0e-05: 163
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 149
Number of HSP's that attempted gapping in prelim test: 169190
Number of HSP's gapped (non-prelim): 187
length of query: 402
length of database: 1,894,087,724
effective HSP length: 135
effective length of query: 267
effective length of database: 1,155,621,389
effective search space: 308550910863
effective search space used: 308550910863
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)