proteins
| 4 proteins |
S | COG4270 | Predicted membrane protein | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Staphylococcus aureus N315 (Bacillales | Bacilli) | ||||
| SA1937 | ||||
116 letters (r) 0
0 465 = ||| 1 SA1937 (116) = 3
148
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SA1937
(116 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
SA1937 183 4e-47
DR2024 65 2e-11
all4478 55 2e-08
PA0806 36 0.013
RSp1571 28 4.0
# >SA1937
# Length = 116
#
# Score = 183 bits (465), Expect = 4e-47
# Identities = 116/116 (100%), Positives = 116/116 (100%)
#
# Query: 1 MNILRYLLGIGFSVIGVLHFTRERQFRNIIPKCLPLRKTAVLVTGIFEILFGLALLIKRP 60
# MNILRYLLGIGFSVIGVLHFTRERQFRNIIPKCLPLRKTAVLVTGIFEILFGLALLIKRP
# Sbjct: 1 MNILRYLLGIGFSVIGVLHFTRERQFRNIIPKCLPLRKTAVLVTGIFEILFGLALLIKRP 60
#
# Query: 61 SQCLKNTINLFLLAVFPANIYMAVKKLPLGDKQLPTWQLYLRLPMQFVLMGLIKKL 116
# SQCLKNTINLFLLAVFPANIYMAVKKLPLGDKQLPTWQLYLRLPMQFVLMGLIKKL
# Sbjct: 61 SQCLKNTINLFLLAVFPANIYMAVKKLPLGDKQLPTWQLYLRLPMQFVLMGLIKKL 116
#
#
# >DR2024
# Length = 120
#
# Score = 65.1 bits (157), Expect = 2e-11
# Identities = 43/103 (41%), Positives = 59/103 (56%), Gaps = 3/103 (2%)
#
# Query: 8 LGIGFSVIGVLHFTRERQFRNIIPKCLPLR-KTAVLVTGIFEILFGLALLIKRPSQCLKN 66
# L + F+ IG+ HFT F I+P +P+ +TA LV+G EI GL LL+ +
# Sbjct: 11 LALAFTAIGIRHFTHPEPFDRIVPPSVPMSPRTATLVSGAAEIAGGLGLLLPTTRPAARW 70
#
# Query: 67 TINLFLLAVFPANIYMAVKKLPLGDKQLPTWQLYLRLPMQFVL 109
# + L+AVFPANIYMA + P + LP W L RLP+Q +L
# Sbjct: 71 GLIALLVAVFPANIYMA--RHPEQYRPLPRWALLARLPLQPLL 111
#
#
# >all4478
# Length = 140
#
# Score = 55.5 bits (132), Expect = 2e-08
# Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
#
# Query: 3 ILRYLLGIGFSVIGVLHFTRERQFRNIIPKCLPLRKTAVLVTGIFEILFGLALLIKRPSQ 62
# + R +L + ++G+ HF R Q+ I+P P T+V ++G EIL G+ L+I S
# Sbjct: 14 LFRGILAVAIIIVGITHFLRPEQYARIVPPPFP-PFTSVYISGFLEILGGIGLMIPSVSV 72
#
# Query: 63 CLKNTINLFLLAVFPANIYMAVKKLPLGDKQLPTWQLYLRLPMQFVLM 110
# + +AVFPANIYM + +P+ RLP Q VL+
# Sbjct: 73 AAAWGLISLFIAVFPANIYMTLHNIPIDGIPHNQLLYVARLPFQAVLI 120
#
#
# >PA0806
# Length = 131
#
# Score = 36.2 bits (82), Expect = 0.013
# Identities = 25/71 (35%), Positives = 37/71 (51%)
#
# Query: 12 FSVIGVLHFTRERQFRNIIPKCLPLRKTAVLVTGIFEILFGLALLIKRPSQCLKNTINLF 71
# F + G+ HF F I+P +P AV V+G+FE+L ALL+ + + +
# Sbjct: 17 FLLGGLGHFVFTDFFVGIVPPYVPWPLAAVWVSGVFELLGAAALLVPAWRRLAACGLFIL 76
#
# Query: 72 LLAVFPANIYM 82
# L V PAN+YM
# Sbjct: 77 TLCVTPANLYM 87
#
#
# >RSp1571
# Length = 324
#
# Score = 27.7 bits (60), Expect = 4.0
# Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
#
# Query: 9 GIGFSVIGVLHFTRERQFRNIIPKC---LPLRKTAVLVTGIFEILFGLALLIKRPSQCLK 65
# GI F V H + + +C +PL + GI FGL LLI+ +
# Sbjct: 157 GIAFCASAVHHIVAAVHPEHPLARCDDPVPLAQALAYPVGIMPPAFGLGLLIR----TIA 212
#
# Query: 66 NTINLFLLAVFPANIYMAVK 85
# NL L F AN MA++
# Sbjct: 213 KAENLNLTPNFNANTLMALR 232
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.334 0.151 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,456,992
Number of Sequences: 192987
Number of extensions: 440531
Number of successful extensions: 1105
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 16
length of query: 116
length of database: 59,019,183
effective HSP length: 92
effective length of query: 24
effective length of database: 41,264,379
effective search space: 990345096
effective search space used: 990345096
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 57 (26.6 bits)
S2: 57 (26.6 bits)