proteins
| 67 proteins |
J | COG0256 | Ribosomal protein L18 | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Thermoplasma volcanium (Thermoplasmatales | Thermoplasmata) | ||||
| TVN0344 | ||||
160 letters (r) 0
0 742 = ||| 1 TVN0344 (160) = 0
24 282 = | 13 MTH22 (192) = 8
-1
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TVN0344
(160 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
TVN0344 290 9e-79
Ta1252m 231 4e-61
MTH22 113 2e-25
APE0347 108 5e-24
AF1906 107 1e-23
MJ0474 102 4e-22
PAE2101 102 5e-22
MK0030 100 1e-21
VNG1714G 99 4e-21
PH1758 96 2e-20
PAB2135 96 2e-20
MA1091 92 4e-19
SSO0699 87 1e-17
YPL131w 69 3e-12
ECU06g0900i 61 9e-10
SPBC11C11.09c 61 9e-10
SPAC3H5.12c 61 1e-09
NMA0113 35 0.049
NMB0158 35 0.049
RSc3003 35 0.081
mlr6575 31 0.91
L0171 30 2.8
BB0388 30 2.8
RSc2170 29 3.5
TVN0681 28 7.9
# >TVN0344
# Length = 160
#
# Score = 290 bits (742), Expect = 9e-79
# Identities = 160/160 (100%), Positives = 160/160 (100%)
#
# Query: 1 MAFKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALS 60
# MAFKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALS
# Sbjct: 1 MAFKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALS 60
#
# Query: 61 KYGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV 120
# KYGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV
# Sbjct: 61 KYGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV 120
#
# Query: 121 DIPHGEDVFPDKKRLNGSHLKNPVKLNEAVKNFKKLEEKA 160
# DIPHGEDVFPDKKRLNGSHLKNPVKLNEAVKNFKKLEEKA
# Sbjct: 121 DIPHGEDVFPDKKRLNGSHLKNPVKLNEAVKNFKKLEEKA 160
#
#
# >Ta1252m
# Length = 160
#
# Score = 231 bits (590), Expect = 4e-61
# Identities = 116/160 (72%), Positives = 144/160 (89%)
#
# Query: 1 MAFKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALS 60
# M FKRK G TDY +RL+LLKS+++RFIVRIT KG+IAQ+AEYS GDRIL T+TDK L+
# Sbjct: 1 MVFKRKEAGITDYSKRLKLLKSREKRFIVRITGKGVIAQVAEYSDIGDRILFTVTDKTLA 60
#
# Query: 61 KYGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV 120
# KYG++LRGNN+Q+CYLVGY AG+E++K GVE+AVLD GR+KFRKGGRIAACLKG TD+G+
# Sbjct: 61 KYGVDLRGNNIQVCYLVGYIAGIESEKNGVESAVLDTGRRKFRKGGRIAACLKGFTDAGI 120
#
# Query: 121 DIPHGEDVFPDKKRLNGSHLKNPVKLNEAVKNFKKLEEKA 160
# ++PHGEDVFPDKKR++G HLK+PVK++E VKNFKK+EEKA
# Sbjct: 121 EVPHGEDVFPDKKRIDGKHLKSPVKISEIVKNFKKMEEKA 160
#
#
# >MTH22
# Length = 192
#
# Score = 113 bits (282), Expect = 2e-25
# Identities = 59/140 (42%), Positives = 84/140 (59%)
#
# Query: 1 MAFKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALS 60
# +AF+R+ GKTDY R +++++ R +VRIT +IAQI +NGD L + K L
# Sbjct: 9 LAFRRRREGKTDYRARYKMVETGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQ 68
#
# Query: 61 KYGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV 120
# K G +N YL GY G A K G+E AVLDIG + +G ++ A LKG D+G+
# Sbjct: 69 KMGWLGGTSNTAAAYLTGYLCGKRALKEGIEEAVLDIGLRPAIRGSKVFAALKGAVDAGL 128
#
# Query: 121 DIPHGEDVFPDKKRLNGSHL 140
# ++PHGE V PD+ R+ G H+
# Sbjct: 129 NVPHGESVLPDESRIRGEHI 148
#
#
# >APE0347
# Length = 214
#
# Score = 108 bits (270), Expect = 5e-24
# Identities = 60/138 (43%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
#
# Query: 4 KRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKAL-SKY 62
# +R+ GKT+Y RR RL+KS R VRI+N+ + Q E + GDR++A + L K+
# Sbjct: 12 RRRREGKTNYYRRFRLVKSGKPRMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKF 71
#
# Query: 63 GIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVDI 122
# G + GNN YL GY AG+ A + GV AVLD+G K KG R+ A LKG D+GV+I
# Sbjct: 72 GWKGDGNNTCAAYLTGYLAGLRALEKGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEI 131
#
# Query: 123 PHGEDVFPDKKRLNGSHL 140
# PH E++ P +R+ H+
# Sbjct: 132 PHSEEILPGDERVRCEHI 149
#
#
# >AF1906
# Length = 189
#
# Score = 107 bits (266), Expect = 1e-23
# Identities = 55/144 (38%), Positives = 87/144 (60%)
#
# Query: 4 KRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKYG 63
# +R+ GKT+Y +RL+LL S+ R +VRITN+ +IAQI EY+ GDR++ + L ++G
# Sbjct: 14 RRRREGKTNYRKRLKLLLSRKPRLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFG 73
#
# Query: 64 IELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVDIP 123
# + NN YL G +A + G+ AVLDIG +G R+ A L+G + G+++P
# Sbjct: 74 WKGDLNNTPAAYLTGILIAKKALQKGIGEAVLDIGLHTPTRGSRVFAVLRGAVEGGLEVP 133
#
# Query: 124 HGEDVFPDKKRLNGSHLKNPVKLN 147
# H ++V PD R+ G H+ ++N
# Sbjct: 134 HSDEVLPDDSRIRGEHIAAYYEMN 157
#
#
# >MJ0474
# Length = 195
#
# Score = 102 bits (254), Expect = 4e-22
# Identities = 58/139 (41%), Positives = 80/139 (56%)
#
# Query: 3 FKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKY 62
# F+R+ KTDY +RL+LL S+ R + R T IAQI Y GD+ + + + L K
# Sbjct: 11 FRRRREAKTDYRKRLKLLLSRKPRLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKL 70
#
# Query: 63 GIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVDI 122
# G + NL YL GY G +A G AVLDIG + KG I A LKG D+G++I
# Sbjct: 71 GYKGHTGNLPSAYLTGYLLGKKALAKGYTEAVLDIGLHRATKGNAIFAILKGALDAGMEI 130
#
# Query: 123 PHGEDVFPDKKRLNGSHLK 141
# PHGE++ P ++R+ G H+K
# Sbjct: 131 PHGEEILPSEERIRGEHIK 149
#
#
# >PAE2101
# Length = 205
#
# Score = 102 bits (253), Expect = 5e-22
# Identities = 59/138 (42%), Positives = 82/138 (58%)
#
# Query: 3 FKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKY 62
# F+R+ G T+Y +R +LL SK R +VR TNK IIAQI GD + + L+K+
# Sbjct: 11 FRRRREGLTNYRKRRKLLLSKKPRLVVRKTNKHIIAQIVVAKPQGDVTIVGADTRILAKF 70
#
# Query: 63 GIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVDI 122
# G NN+ YL+G G +A+ VE A+LDIG + G R+ A LKG D+G+ I
# Sbjct: 71 GWRGDENNVAAAYLLGLVVGYKARARRVEEAILDIGLHRPAPGARVFAVLKGALDAGLKI 130
#
# Query: 123 PHGEDVFPDKKRLNGSHL 140
# PHGE+V PD+ R+ G H+
# Sbjct: 131 PHGEEVLPDEDRIKGKHV 148
#
#
# >MK0030
# Length = 202
#
# Score = 100 bits (249), Expect = 1e-21
# Identities = 57/141 (40%), Positives = 85/141 (59%), Gaps = 1/141 (0%)
#
# Query: 3 FKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKAL-SK 61
# F+R+ GKT+Y +R L+K+ R + R T IAQI +++ +GD LA+ L +K
# Sbjct: 14 FRRRREGKTNYYKRRELIKADAPRLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNK 73
#
# Query: 62 YGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVD 121
# +G + N YL GY G+ A + G+E AV+DIG + +G R+ A LKG D+G+D
# Sbjct: 74 FGWKGHCGNTPAAYLTGYLCGLRALERGIERAVIDIGLHRPVRGSRVFAMLKGALDAGMD 133
#
# Query: 122 IPHGEDVFPDKKRLNGSHLKN 142
# IPHGE+V P + R+ G H+ N
# Sbjct: 134 IPHGEEVLPPEDRIRGEHIAN 154
#
#
# >VNG1714G
# Length = 183
#
# Score = 98.6 bits (244), Expect = 4e-21
# Identities = 53/131 (40%), Positives = 70/131 (52%)
#
# Query: 10 KTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKYGIELRGN 69
# +TDY +RLRLLKS R + R +NK + AQ+ +GD +A+ L YG
# Sbjct: 18 RTDYHQRLRLLKSGKPRLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTG 77
#
# Query: 70 NLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVDIPHGEDVF 129
# NL YL G AG A AGVE AVLDIG G ++ A +G D+G+D+PH + V
# Sbjct: 78 NLPAAYLTGLLAGQRAVDAGVEEAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVL 137
#
# Query: 130 PDKKRLNGSHL 140
# D R G H+
# Sbjct: 138 ADWSRTRGEHI 148
#
#
# >PH1758
# Length = 206
#
# Score = 96.3 bits (238), Expect = 2e-20
# Identities = 56/139 (40%), Positives = 83/139 (59%), Gaps = 1/139 (0%)
#
# Query: 3 FKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATI-TDKALSK 61
# F+R+ GKT+Y +RL+LLKS R +VR + IAQI Y GDR L + T + +
# Sbjct: 14 FRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRD 73
#
# Query: 62 YGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVD 121
# +G + N YL+G G +A+KAG+E A+LDIG +G I A LKG D+G++
# Sbjct: 74 FGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSIFAVLKGAIDAGLN 133
#
# Query: 122 IPHGEDVFPDKKRLNGSHL 140
# +PH ++FP+ R+ G H+
# Sbjct: 134 VPHSPEIFPEDYRIRGEHI 152
#
#
# >PAB2135
# Length = 203
#
# Score = 96.3 bits (238), Expect = 2e-20
# Identities = 55/139 (39%), Positives = 83/139 (59%), Gaps = 1/139 (0%)
#
# Query: 3 FKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATI-TDKALSK 61
# F+R+ GKT+Y +RL+LLKS R +VR + IAQI Y GDR L + T + +
# Sbjct: 11 FRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRD 70
#
# Query: 62 YGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVD 121
# +G + N YL+G G +A+KAG+E A+LDIG +G + A LKG D+G++
# Sbjct: 71 FGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLN 130
#
# Query: 122 IPHGEDVFPDKKRLNGSHL 140
# +PH ++FP+ R+ G H+
# Sbjct: 131 VPHSPEIFPEDYRIRGEHI 149
#
#
# >MA1091
# Length = 174
#
# Score = 92.4 bits (228), Expect = 4e-19
# Identities = 48/138 (34%), Positives = 78/138 (55%)
#
# Query: 3 FKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKY 62
# F+R+ G+T+Y RL+LL S+ R +VR +++ + Q+ + +GD ++ L+KY
# Sbjct: 11 FRRRREGRTNYHLRLKLLLSRQDRVVVRKSSRNVQIQLIAPTPDGDITYSSAVSNELAKY 70
#
# Query: 63 GIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVDI 122
# G N YL G G+++ + G E +LDIG + G R+ A LKG+ DSG +I
# Sbjct: 71 GYTGATGNTTAAYLTGLLFGLKSLQKGYEGGILDIGLQASSAGSRVYAALKGVVDSGFEI 130
#
# Query: 123 PHGEDVFPDKKRLNGSHL 140
# P +VFP +R+ G H+
# Sbjct: 131 PCSPEVFPPDERIRGEHI 148
#
#
# >SSO0699
# Length = 199
#
# Score = 87.4 bits (215), Expect = 1e-17
# Identities = 57/138 (41%), Positives = 79/138 (56%), Gaps = 2/138 (1%)
#
# Query: 4 KRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALS-KY 62
# +R+ GKT+Y +R + SK RFIVRITNK +I QIA+ GD ++A+ L+ K+
# Sbjct: 15 RRRREGKTNYYKRYVYVISKQTRFIVRITNKYVIVQIAKIDPKGDIMIASAHSAELAKKF 74
#
# Query: 63 GIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVDI 122
# G + NN YL GY AG+ A K GV V DIG KG R+ +KG D+G+ I
# Sbjct: 75 GWKGDENNTPAAYLTGYLAGLRAIKRGVTECVADIGLHVPSKGNRVFYVIKGAIDAGLKI 134
#
# Query: 123 PHGEDVFPDKKRLNGSHL 140
# P G D+ + R+ G H+
# Sbjct: 135 PIG-DISIENDRIKGEHI 151
#
#
# >YPL131w
# Length = 297
#
# Score = 69.3 bits (168), Expect = 3e-12
# Identities = 51/162 (31%), Positives = 70/162 (42%), Gaps = 34/162 (20%)
#
# Query: 3 FKRKVLGKTDYGRRLRLL-------KSKDRRFIVRITNKGIIAQIAEYSVNGDRILATIT 55
# F+R+ GKTDY +R RL+ + R +VR TNK II QI ++ GD +LA
# Sbjct: 20 FRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAY 79
#
# Query: 56 DKALSKYGIELRGNNLQICYLVG-YAAGVEAQKAGVE----------------------- 91
# L +YGI N Y G A QK G++
# Sbjct: 80 SHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGP 139
#
# Query: 92 ---TAVLDIGRKKFRKGGRIAACLKGITDSGVDIPHGEDVFP 130
# LDIG ++ G R+ LKG +D G+ +PH E+ FP
# Sbjct: 140 RPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFP 181
#
#
# >ECU06g0900i
# Length = 283
#
# Score = 61.2 bits (147), Expect = 9e-10
# Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 33/159 (20%)
#
# Query: 4 KRKVLGKTDYGRRLRLLK-------SKDRRFIVRITNKGIIAQIAEYSVNGDRILATITD 56
# +R+ GKTDY R +++ S R +VRIT +I QI ++GDR++
# Sbjct: 15 RRRREGKTDYKHRTNMIRQDSNSCGSVKHRLVVRITGSRVICQIVAAYMDGDRVMVYADS 74
#
# Query: 57 KALSKYGIELRGNNLQICYLVGYAAGVEAQKA-----------------------GVETA 93
# + L +YGI N Y G+ G A A G + A
# Sbjct: 75 RELERYGINFGATNYSAAYATGFLIGRRALTAMSLDEVYRPKEIDGTYSVTKDIDGEKKA 134
#
# Query: 94 ---VLDIGRKKFRKGGRIAACLKGITDSGVDIPHGEDVF 129
# LDIG + +G R+ LKG +D+G+++PH F
# Sbjct: 135 PRVFLDIGLARSTRGARVFGALKGASDAGLNVPHSAAKF 173
#
#
# >SPBC11C11.09c
# Length = 294
#
# Score = 61.2 bits (147), Expect = 9e-10
# Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 34/162 (20%)
#
# Query: 3 FKRKVLGKTDYGRRLRLL-KSKDR------RFIVRITNKGIIAQIAEYSVNGDRILATIT 55
# ++R+ GKTDY R RL+ ++K++ R +VR +N+ + QI VNGD +LA
# Sbjct: 20 YRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAH 79
#
# Query: 56 DKALSKYGIELRGNNLQICYLVGY--------AAGVEAQKAGVE---------------- 91
# L +YGI+ N Y G G+ + GV
# Sbjct: 80 SSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGP 139
#
# Query: 92 ---TAVLDIGRKKFRKGGRIAACLKGITDSGVDIPHGEDVFP 130
# LD+G K+ G R+ +KG +D G+ IPH + FP
# Sbjct: 140 RPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFP 181
#
#
# >SPAC3H5.12c
# Length = 294
#
# Score = 61.2 bits (147), Expect = 1e-09
# Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 34/162 (20%)
#
# Query: 3 FKRKVLGKTDYGRRLRLL-KSKDR------RFIVRITNKGIIAQIAEYSVNGDRILATIT 55
# ++R+ GKTDY R RL+ ++K++ R +VR +N+ + QI VNGD +LA
# Sbjct: 20 YRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAH 79
#
# Query: 56 DKALSKYGIELRGNNLQICYLVGY--------AAGVEAQKAGVE---------------- 91
# L +YGI+ N Y G G+ + GV
# Sbjct: 80 SSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGP 139
#
# Query: 92 ---TAVLDIGRKKFRKGGRIAACLKGITDSGVDIPHGEDVFP 130
# LD+G K+ G R+ +KG +D G+ IPH + FP
# Sbjct: 140 RPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFP 181
#
#
# >NMA0113
# Length = 117
#
# Score = 35.4 bits (80), Expect = 0.049
# Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
#
# Query: 16 RLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKYGIELRGNNLQICY 75
# R R+ K R V +N I AQ+ S GD++LA + G G+N++
# Sbjct: 15 RARIADLKMVRLCVFRSNNHIYAQVI--SAEGDKVLAQASTLEAEVRGSLKSGSNVEAAA 72
#
# Query: 76 LVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV 120
# +VG +A+ AGVE D R F+ GR+ A + ++G+
# Sbjct: 73 IVGKRIAEKAKAAGVEKVAFD--RSGFQYHGRVKALAEAARENGL 115
#
#
# >NMB0158
# Length = 117
#
# Score = 35.4 bits (80), Expect = 0.049
# Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
#
# Query: 16 RLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKYGIELRGNNLQICY 75
# R R+ K R V +N I AQ+ S GD++LA + G G+N++
# Sbjct: 15 RARIADLKMVRLCVFRSNNHIYAQVI--SAEGDKVLAQASTLEAEVRGSLKSGSNVEAAA 72
#
# Query: 76 LVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV 120
# +VG +A+ AGVE D R F+ GR+ A + ++G+
# Sbjct: 73 IVGKRIAEKAKAAGVEKVAFD--RSGFQYHGRVKALAEAARENGL 115
#
#
# >RSc3003
# Length = 118
#
# Score = 34.7 bits (78), Expect = 0.081
# Identities = 32/106 (30%), Positives = 51/106 (47%), Gaps = 5/106 (4%)
#
# Query: 16 RLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATI-TDKALSKYGIELRGNNLQIC 74
# RL++ + R V TN I AQ+ +S +G ++LA+ T +A + + G N
# Sbjct: 15 RLKIAELNVARLAVHRTNLHIYAQV--FSEDGTKVLASASTAEAEVRKELNGNGGNTAAA 72
#
# Query: 75 YLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV 120
# LVG +A+ AG+E D R FR GR+ A ++G+
# Sbjct: 73 TLVGKRIAEKAKAAGIEAVAFD--RSGFRYHGRVKALADAAREAGL 116
#
#
# >mlr6575
# Length = 807
#
# Score = 31.2 bits (69), Expect = 0.91
# Identities = 15/43 (34%), Positives = 24/43 (54%)
#
# Query: 112 LKGITDSGVDIPHGEDVFPDKKRLNGSHLKNPVKLNEAVKNFK 154
# L G+ D V + V + R+ GS L++ ++LNE KNF+
# Sbjct: 384 LPGLHDHAVSLERPGAVKAESTRVMGSFLRDVMRLNEVAKNFR 426
#
#
# >L0171
# Length = 280
#
# Score = 29.6 bits (65), Expect = 2.8
# Identities = 17/71 (23%), Positives = 35/71 (48%), Gaps = 1/71 (1%)
#
# Query: 24 DRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKYGIELRGNNLQI-CYLVGYAAG 82
# D + ++RIT K +IA + +++ G +L + D ++ + ++ + GY AG
# Sbjct: 105 DLQHLIRITPKPVIAMVNGFAIGGGHVLHIVCDLTIASENAKFGQTGPRVGSFDAGYGAG 164
#
# Query: 83 VEAQKAGVETA 93
# + A G + A
# Sbjct: 165 LLAAMVGQKKA 175
#
#
# >BB0388
# Length = 1377
#
# Score = 29.6 bits (65), Expect = 2.8
# Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
#
# Query: 8 LGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSV-NGDRILATITDKALSKYGIE 65
# L D G R L + +VRI + G I I +V NG+ IL ++ +KA+ Y IE
# Sbjct: 751 LKTADAGYLTRRLVDIAQDVVVRIEDCGTINGIKVETVKNGEEILESLKEKAVGSYSIE 809
#
#
# >RSc2170
# Length = 353
#
# Score = 29.3 bits (64), Expect = 3.5
# Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
#
# Query: 83 VEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITD 117
# +E +AGV T+V D+GR +R R C+ G D
# Sbjct: 13 IEIVRAGVLTSVQDLGRTGYR---RFGVCMSGALD 44
#
#
# >TVN0681
# Length = 1007
#
# Score = 28.1 bits (61), Expect = 7.9
# Identities = 40/170 (23%), Positives = 67/170 (38%), Gaps = 39/170 (22%)
#
# Query: 10 KTDYGRRLR-LLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKYGIELRG 68
# +T YG++L+ LKS+ IA Y +A I + +S YG +++
# Sbjct: 604 ETSYGKKLQDFLKSR---------------LIAIYGQKNRSFMADI-NTVISLYGNDMQN 647
#
# Query: 69 NNLQICYLVGYAAGVEAQKAGVETAVLDIGR----------------KKFRKGGRIAACL 112
# + YL YA+ ++ +E + L G+ K K G A
# Sbjct: 648 GPVDFIYLESYASKSVVRRVSMERSDLKPGKWFYLRSPEIFLREIMPKLNHKLGDFAEVK 707
#
# Query: 113 KGITDSGVDIPHGEDVFPDKKRLNGSHLKNPVKLNE---AVKNFKKLEEK 159
# +G T + + DV + +L NP K E + KN K+L+E+
# Sbjct: 708 RGFTTGANEFFYMRDV---SSQYETDYLANPKKFEEWGVSAKNEKELKEQ 754
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.319 0.139 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,031,246
Number of Sequences: 192987
Number of extensions: 731076
Number of successful extensions: 2081
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2042
Number of HSP's gapped (non-prelim): 42
length of query: 160
length of database: 59,019,183
effective HSP length: 101
effective length of query: 59
effective length of database: 39,527,496
effective search space: 2332122264
effective search space used: 2332122264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
S2: 61 (28.1 bits)