proteins
| 67 proteins |
J | COG0256 | Ribosomal protein L18 | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Thermoplasma volcanium (Thermoplasmatales | Thermoplasmata) | ||||
| TVN0344 | ||||
160 letters 0
0 810 = |||TVN0344 (160) = 0
21 299 = |MTH22 (192) = 8
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TVN0344
(160 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
TVN0344 316 1e-86
Ta1252m 253 9e-68
MTH22 119 2e-27
APE0347 112 2e-25
AF1906 112 2e-25
MJ0474 110 9e-25
PAE2101 110 1e-24
MK0030 106 2e-23
PH1758 103 2e-22
PAB2135 103 2e-22
MA1091 94 9e-20
ECU06g0900i 67 1e-11
AF1037 28 8.1
# >TVN0344
# Length = 160
#
# Score = 316 bits (810), Expect = 1e-86
# Identities = 160/160 (100%), Positives = 160/160 (100%)
#
# Query: 1 MAFKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALS 60
# MAFKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALS
# Sbjct: 1 MAFKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALS 60
#
# Query: 61 KYGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV 120
# KYGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV
# Sbjct: 61 KYGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV 120
#
# Query: 121 DIPHGEDVFPDKKRLNGSHLKNPVKLNEAVKNFKKLEEKA 160
# DIPHGEDVFPDKKRLNGSHLKNPVKLNEAVKNFKKLEEKA
# Sbjct: 121 DIPHGEDVFPDKKRLNGSHLKNPVKLNEAVKNFKKLEEKA 160
#
#
# >Ta1252m
# Length = 160
#
# Score = 253 bits (647), Expect = 9e-68
# Identities = 116/160 (72%), Positives = 144/160 (89%)
#
# Query: 1 MAFKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALS 60
# M FKRK G TDY +RL+LLKS+++RFIVRIT KG+IAQ+AEYS GDRIL T+TDK L+
# Sbjct: 1 MVFKRKEAGITDYSKRLKLLKSREKRFIVRITGKGVIAQVAEYSDIGDRILFTVTDKTLA 60
#
# Query: 61 KYGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV 120
# KYG++LRGNN+Q+CYLVGY AG+E++K GVE+AVLD GR+KFRKGGRIAACLKG TD+G+
# Sbjct: 61 KYGVDLRGNNIQVCYLVGYIAGIESEKNGVESAVLDTGRRKFRKGGRIAACLKGFTDAGI 120
#
# Query: 121 DIPHGEDVFPDKKRLNGSHLKNPVKLNEAVKNFKKLEEKA 160
# ++PHGEDVFPDKKR++G HLK+PVK++E VKNFKK+EEKA
# Sbjct: 121 EVPHGEDVFPDKKRIDGKHLKSPVKISEIVKNFKKMEEKA 160
#
#
# >MTH22
# Length = 192
#
# Score = 119 bits (299), Expect = 2e-27
# Identities = 64/162 (39%), Positives = 91/162 (55%), Gaps = 3/162 (1%)
#
# Query: 1 MAFKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALS 60
# +AF+R+ GKTDY R +++++ R +VRIT +IAQI +NGD L + K L
# Sbjct: 9 LAFRRRREGKTDYRARYKMVETGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQ 68
#
# Query: 61 KYGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGV 120
# K G +N YL GY G A K G+E AVLDIG + +G ++ A LKG D+G+
# Sbjct: 69 KMGWLGGTSNTAAAYLTGYLCGKRALKEGIEEAVLDIGLRPAIRGSKVFAALKGAVDAGL 128
#
# Query: 121 DIPHGEDVFPDKKRLNGSHL---KNPVKLNEAVKNFKKLEEK 159
# ++PHGE V PD+ R+ G H+ + E K F K E+
# Sbjct: 129 NVPHGESVLPDESRIRGEHIMEYAESLDEEELRKRFSKYLER 170
#
#
# >APE0347
# Length = 214
#
# Score = 112 bits (281), Expect = 2e-25
# Identities = 60/138 (43%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
#
# Query: 4 KRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKAL-SKY 62
# +R+ GKT+Y RR RL+KS R VRI+N+ + Q E + GDR++A + L K+
# Sbjct: 12 RRRREGKTNYYRRFRLVKSGKPRMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKF 71
#
# Query: 63 GIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVDI 122
# G + GNN YL GY AG+ A + GV AVLD+G K KG R+ A LKG D+GV+I
# Sbjct: 72 GWKGDGNNTCAAYLTGYLAGLRALEKGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEI 131
#
# Query: 123 PHGEDVFPDKKRLNGSHL 140
# PH E++ P +R+ H+
# Sbjct: 132 PHSEEILPGDERVRCEHI 149
#
#
# >AF1906
# Length = 189
#
# Score = 112 bits (281), Expect = 2e-25
# Identities = 55/144 (38%), Positives = 87/144 (60%)
#
# Query: 4 KRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKYG 63
# +R+ GKT+Y +RL+LL S+ R +VRITN+ +IAQI EY+ GDR++ + L ++G
# Sbjct: 14 RRRREGKTNYRKRLKLLLSRKPRLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFG 73
#
# Query: 64 IELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVDIP 123
# + NN YL G +A + G+ AVLDIG +G R+ A L+G + G+++P
# Sbjct: 74 WKGDLNNTPAAYLTGILIAKKALQKGIGEAVLDIGLHTPTRGSRVFAVLRGAVEGGLEVP 133
#
# Query: 124 HGEDVFPDKKRLNGSHLKNPVKLN 147
# H ++V PD R+ G H+ ++N
# Sbjct: 134 HSDEVLPDDSRIRGEHIAAYYEMN 157
#
#
# >MJ0474
# Length = 195
#
# Score = 110 bits (276), Expect = 9e-25
# Identities = 58/139 (41%), Positives = 80/139 (56%)
#
# Query: 3 FKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKY 62
# F+R+ KTDY +RL+LL S+ R + R T IAQI Y GD+ + + + L K
# Sbjct: 11 FRRRREAKTDYRKRLKLLLSRKPRLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKL 70
#
# Query: 63 GIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVDI 122
# G + NL YL GY G +A G AVLDIG + KG I A LKG D+G++I
# Sbjct: 71 GYKGHTGNLPSAYLTGYLLGKKALAKGYTEAVLDIGLHRATKGNAIFAILKGALDAGMEI 130
#
# Query: 123 PHGEDVFPDKKRLNGSHLK 141
# PHGE++ P ++R+ G H+K
# Sbjct: 131 PHGEEILPSEERIRGEHIK 149
#
#
# >PAE2101
# Length = 205
#
# Score = 110 bits (275), Expect = 1e-24
# Identities = 59/138 (42%), Positives = 82/138 (58%)
#
# Query: 3 FKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKY 62
# F+R+ G T+Y +R +LL SK R +VR TNK IIAQI GD + + L+K+
# Sbjct: 11 FRRRREGLTNYRKRRKLLLSKKPRLVVRKTNKHIIAQIVVAKPQGDVTIVGADTRILAKF 70
#
# Query: 63 GIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVDI 122
# G NN+ YL+G G +A+ VE A+LDIG + G R+ A LKG D+G+ I
# Sbjct: 71 GWRGDENNVAAAYLLGLVVGYKARARRVEEAILDIGLHRPAPGARVFAVLKGALDAGLKI 130
#
# Query: 123 PHGEDVFPDKKRLNGSHL 140
# PHGE+V PD+ R+ G H+
# Sbjct: 131 PHGEEVLPDEDRIKGKHV 148
#
#
# >MK0030
# Length = 202
#
# Score = 106 bits (265), Expect = 2e-23
# Identities = 57/141 (40%), Positives = 85/141 (59%), Gaps = 1/141 (0%)
#
# Query: 3 FKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKAL-SK 61
# F+R+ GKT+Y +R L+K+ R + R T IAQI +++ +GD LA+ L +K
# Sbjct: 14 FRRRREGKTNYYKRRELIKADAPRLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNK 73
#
# Query: 62 YGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVD 121
# +G + N YL GY G+ A + G+E AV+DIG + +G R+ A LKG D+G+D
# Sbjct: 74 FGWKGHCGNTPAAYLTGYLCGLRALERGIERAVIDIGLHRPVRGSRVFAMLKGALDAGMD 133
#
# Query: 122 IPHGEDVFPDKKRLNGSHLKN 142
# IPHGE+V P + R+ G H+ N
# Sbjct: 134 IPHGEEVLPPEDRIRGEHIAN 154
#
#
# >PH1758
# Length = 206
#
# Score = 103 bits (256), Expect = 2e-22
# Identities = 56/139 (40%), Positives = 83/139 (59%), Gaps = 1/139 (0%)
#
# Query: 3 FKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATI-TDKALSK 61
# F+R+ GKT+Y +RL+LLKS R +VR + IAQI Y GDR L + T + +
# Sbjct: 14 FRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRD 73
#
# Query: 62 YGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVD 121
# +G + N YL+G G +A+KAG+E A+LDIG +G I A LKG D+G++
# Sbjct: 74 FGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSIFAVLKGAIDAGLN 133
#
# Query: 122 IPHGEDVFPDKKRLNGSHL 140
# +PH ++FP+ R+ G H+
# Sbjct: 134 VPHSPEIFPEDYRIRGEHI 152
#
#
# >PAB2135
# Length = 203
#
# Score = 103 bits (256), Expect = 2e-22
# Identities = 55/139 (39%), Positives = 83/139 (59%), Gaps = 1/139 (0%)
#
# Query: 3 FKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATI-TDKALSK 61
# F+R+ GKT+Y +RL+LLKS R +VR + IAQI Y GDR L + T + +
# Sbjct: 11 FRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRD 70
#
# Query: 62 YGIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVD 121
# +G + N YL+G G +A+KAG+E A+LDIG +G + A LKG D+G++
# Sbjct: 71 FGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLN 130
#
# Query: 122 IPHGEDVFPDKKRLNGSHL 140
# +PH ++FP+ R+ G H+
# Sbjct: 131 VPHSPEIFPEDYRIRGEHI 149
#
#
# >MA1091
# Length = 174
#
# Score = 94.4 bits (233), Expect = 9e-20
# Identities = 48/138 (34%), Positives = 78/138 (55%)
#
# Query: 3 FKRKVLGKTDYGRRLRLLKSKDRRFIVRITNKGIIAQIAEYSVNGDRILATITDKALSKY 62
# F+R+ G+T+Y RL+LL S+ R +VR +++ + Q+ + +GD ++ L+KY
# Sbjct: 11 FRRRREGRTNYHLRLKLLLSRQDRVVVRKSSRNVQIQLIAPTPDGDITYSSAVSNELAKY 70
#
# Query: 63 GIELRGNNLQICYLVGYAAGVEAQKAGVETAVLDIGRKKFRKGGRIAACLKGITDSGVDI 122
# G N YL G G+++ + G E +LDIG + G R+ A LKG+ DSG +I
# Sbjct: 71 GYTGATGNTTAAYLTGLLFGLKSLQKGYEGGILDIGLQASSAGSRVYAALKGVVDSGFEI 130
#
# Query: 123 PHGEDVFPDKKRLNGSHL 140
# P +VFP +R+ G H+
# Sbjct: 131 PCSPEVFPPDERIRGEHI 148
#
#
# >ECU06g0900i
# Length = 283
#
# Score = 67.4 bits (163), Expect = 1e-11
# Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 33/159 (20%)
#
# Query: 4 KRKVLGKTDYGRRLRLLK-------SKDRRFIVRITNKGIIAQIAEYSVNGDRILATITD 56
# +R+ GKTDY R +++ S R +VRIT +I QI ++GDR++
# Sbjct: 15 RRRREGKTDYKHRTNMIRQDSNSCGSVKHRLVVRITGSRVICQIVAAYMDGDRVMVYADS 74
#
# Query: 57 KALSKYGIELRGNNLQICYLVGYAAGVEAQKA-----------------------GVETA 93
# + L +YGI N Y G+ G A A G + A
# Sbjct: 75 RELERYGINFGATNYSAAYATGFLIGRRALTAMSLDEVYRPKEIDGTYSVTKDIDGEKKA 134
#
# Query: 94 ---VLDIGRKKFRKGGRIAACLKGITDSGVDIPHGEDVF 129
# LDIG + +G R+ LKG +D+G+++PH F
# Sbjct: 135 PRVFLDIGLARSTRGARVFGALKGASDAGLNVPHSAAKF 173
#
#
# >AF1037
# Length = 270
#
# Score = 28.1 bits (61), Expect = 8.1
# Identities = 12/30 (40%), Positives = 19/30 (63%)
#
# Query: 4 KRKVLGKTDYGRRLRLLKSKDRRFIVRITN 33
# + K+LG D+G LRLLKS + + ++ N
# Sbjct: 35 RMKMLGVKDFGEYLRLLKSNGKEEVEKLIN 64
#
#
Database: myva
Posted date: Sep 17, 2002 10:27 AM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.319 0.139 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,031,246
Number of Sequences: 192987
Number of extensions: 731076
Number of successful extensions: 2081
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2042
Number of HSP's gapped (non-prelim): 42
length of query: 160
length of database: 59,019,183
effective HSP length: 101
effective length of query: 59
effective length of database: 39,527,496
effective search space: 2332122264
effective search space used: 2332122264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
S2: 61 (28.1 bits)