R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 164 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|7939576|dbj|BAA95777.1| (AB028608) gene_id:K20I9.6~unknown protein
[Arabidopsis thaliana]
Length = 1161
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | | | 1161
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 717 (252.4 bits), Expect = 4.4e-69, P = 4.4e-69
Identities = 136/157 (86%), Positives = 145/157 (92%), Frame = +1
Query: 4 GSNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKN 183
GSNG+Q+LWKW R+EQNPTGKATA+V P HWQPN+GLLM ND+ N E +VPCIALSKN
Sbjct: 784 GSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE-NPEGSVPCIALSKN 842
Query: 184 DSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNV 363
DSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDS+IHIYNV
Sbjct: 843 DSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSIHIYNV 902
Query: 364 RVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHL 474
RVDEVK+KLKGHQK ITGLAFST LNILVSSGADA L
Sbjct: 903 RVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQL 939
>gi|8927654|gb|AAF82145.1|AC034256_9 (AC034256) Strong similarity to an unknown
protein T21F11.18 gi|6730738 from Arabidopsis thaliana BAC T21F11
gb|AC018849 and contains multiple WD PF|00400 domains. ESTs
gb|Z34157, gb|AA006273, gb|AA605431, gb|W43588, gb|W43605,
gb|Z34559, gb|R90037, g>
Length = 1153
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | | | 1153
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 663 (233.4 bits), Expect = 3.2e-63, P = 3.2e-63
Identities = 125/158 (79%), Positives = 137/158 (86%), Frame = +1
Query: 7 SNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKND 186
SN I LWKW R+E+N TGKATA++ P WQP +G+LMTND++ N EEAVPC ALSKND
Sbjct: 810 SNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKND 869
Query: 187 SYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVR 366
SYVMSA GGK+SLFNMMTFK M TFMPPPPA+TFLAFHPQDNNIIAIGM+DSTI IYNVR
Sbjct: 870 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVR 929
Query: 367 VDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCV 480
VDEVKSKLKGH KRITGLAFS LN+LVSSGADA LCV
Sbjct: 930 VDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCV 967
>gi|6730738|gb|AAF27128.1|AC018849_16 (AC018849) unknown protein; 52184-57536
[Arabidopsis thaliana]
Length = 1073
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | | | 1073
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 660 (232.3 bits), Expect = 4.6e-63, P = 4.6e-63
Identities = 124/158 (78%), Positives = 137/158 (86%), Frame = +1
Query: 7 SNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKND 186
SN I LWKW R+++N TGKATA++ P WQP +G+LMTND++ N EEAVPC ALSKND
Sbjct: 730 SNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKND 789
Query: 187 SYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVR 366
SYVMSA GGK+SLFNMMTFK M TFMPPPPA+TFLAFHPQDNNIIAIGM+DSTI IYNVR
Sbjct: 790 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVR 849
Query: 367 VDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCV 480
VDEVKSKLKGH KRITGLAFS LN+LVSSGADA LCV
Sbjct: 850 VDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCV 887
>gi|11994359|dbj|BAB02318.1| (AB017071) contains similarity to unknown
protein~gb|AAF27128.1~gene_id:MSJ11.27 [Arabidopsis thaliana]
Length = 1128
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | | | 1128
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 623 (219.3 bits), Expect = 6.1e-59, P = 6.1e-59
Identities = 118/157 (75%), Positives = 132/157 (84%), Frame = +1
Query: 10 NGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKNDS 189
N KLWKW +SE+N GKA +NV P WQP++G+LMTND N E+ VPC ALSKNDS
Sbjct: 792 NAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVLMTNDTREGNKEDVVPCFALSKNDS 851
Query: 190 YVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRV 369
YVMSA GGK+SLFNMMTFK MTTFM PPPA+T LAFHPQDNNIIAIGM+DS+I IYNVRV
Sbjct: 852 YVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRV 911
Query: 370 DEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCV 480
DEVKSKLKGHQKR+TGLAFS LN+LVSSGAD+ LCV
Sbjct: 912 DEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCV 948
>gi|5922612|dbj|BAA84613.1| (AP000492) EST AU078118(E3904) corresponds to a
region of the predicted gene.~similar to Arabidopsis thaliana BAC
IG002P16; No definition line found. (AF007270) [Oryza sativa]
Length = 930
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | | 930
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 597 (210.2 bits), Expect = 1.5e-56, P = 1.5e-56
Identities = 109/125 (87%), Positives = 118/125 (94%), Frame = +1
Query: 4 GSNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKN 183
GSN IQ+LWKWAR++QNP+GKATANVVP HWQPN+GL+M ND + N E+AVPCIALSKN
Sbjct: 616 GSNAIQRLWKWARNDQNPSGKATANVVPQHWQPNSGLVMQNDTADTNPEDAVPCIALSKN 675
Query: 184 DSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNV 363
DSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNV
Sbjct: 676 DSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNV 735
Query: 364 RVDEV 378
RVDE+
Sbjct: 736 RVDEL 740
>gi|5732035|gb|AAD48936.1|AF160760_4 (AF160760) contains similarity to Pfam
family PF0040 - WD domain, G-beta repeat; score=10.8, E=3.2, N-2
[Arabidopsis thaliana]
Length = 892
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 892
0 150 300 450 600 750
Plus Strand HSPs:
Score = 394 (138.7 bits), Expect = 1.4e-34, P = 1.4e-34
Identities = 74/96 (77%), Positives = 81/96 (84%), Frame = +1
Query: 4 GSNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKN 183
GSNGIQ+LWKW +EQNP+GKATA VVP HWQPN+GLLMTND+SGVNLE A PCIALSKN
Sbjct: 789 GSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPCIALSKN 848
Query: 184 DSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFL 291
DSYVMSA GGKVSLFNMMTFKV +M A+ FL
Sbjct: 849 DSYVMSAAGGKVSLFNMMTFKVYIIYMNLKKATRFL 884
>gi|7494198|pir||T18432 hypothetical protein C0365w - malaria parasite
(Plasmodium falciparum) >gi|3649760|emb|CAB11109.1| (Z98547)
predicted using hexExon; MAL3P3.8 (PFC0365w), Guanine
nucleotide-binding protein, len: 533 aa; Similarity to gunanine
nucleotide-binding proteins. A.thaliana pre-mRNA splicing factor
PRP19 (TR:O22785) BLAST Score: 362, sum P(2) = 1.8e-67; 49% >
Length = 532
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 532
0 150 300 450
Plus Strand HSPs:
Score = 143 (50.3 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 36/106 (33%), Positives = 56/106 (52%), Frame = +1
Query: 148 EEAVPCIALSKNDSYVMSACGGKV-SLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIA 324
++ V +AL ++Y +S+ + L ++ T K + T P + LA HP D +
Sbjct: 335 KDHVTSLALHPLENYFISSSKDSMWILHDLETAKTIKTSKDNPSSFKHLAIHP-DGMMFG 393
Query: 325 IGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
I +DS IHIY+++ E K+ L GH K + L+FS N L SS D
Sbjct: 394 IAAQDSNIHIYDIKSQEYKATLNGHTKSLNCLSFSENGYYLASSSKD 440
>gi|5901816|gb|AAD55416.1|AF181630_1 (AF181630) BcDNA.GH04922 [Drosophila
melanogaster]
Length = 1228
Frame 1 hits (HSPs): ______ _____
__________________________________________________
Database sequence: | | | | | | | | | | 1228
0 150 300 450 600 750 900 1050 1200
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 42/143 (29%), Positives = 72/143 (50%), Frame = +1
Query: 61 GKATANVVPLH-WQPNN--GLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFN 231
G A +VPL W P + T +SG AV +A SK +++ G V ++
Sbjct: 398 GYAVPLLVPLTGWLPAPLPSQIRTMTVSGTGCIRAV-WLAPSKQH-LILATSSGDVQQWH 455
Query: 232 MMTFKVMTTFMPPPPASTFLAFHPQ-DNNIIAIGMEDSTIHIYNVRVDEVKSKLKG-HQK 405
+M+ + F A T L PQ D+ ++ G ED+T+ +++V + E ++ +K H
Sbjct: 456 IMSNSLDHIFKGHTAAVTCLLVAPQSDSELLLTGSEDATVLVWHVGLRERRAHIKNAHTA 515
Query: 406 RITGLAFSTNLNILVSSGADAHLCV 480
ITG+A N +++SS DA + +
Sbjct: 516 PITGVAAGANNTLIISSSEDASIAI 540
Score = 102 (35.9 bits), Expect = 0.10, P = 0.097
Identities = 27/108 (25%), Positives = 49/108 (45%), Frame = +1
Query: 157 VPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGME 336
+ C LS++ + A G V L + T + T + L F P + +A G E
Sbjct: 746 ITCFDLSRDSQQMAIASGRHVHLMRINTPEYQCTLEGHTAGVSCLKFAP-NGEFLATGSE 804
Query: 337 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCV 480
D +HI+N+ + E+ + KGH + + + ++S+ D+ L V
Sbjct: 805 DRLVHIWNLALGEICNSFKGHTAPVVKVVVLMDSLRVISTDRDSMLLV 852
>gi|7302600|gb|AAF57681.1| (AE003799) BcDNA:GH04922 gene product [Drosophila
melanogaster]
Length = 1240
Frame 1 hits (HSPs): ______ _____
__________________________________________________
Database sequence: | | | | | | | | | | 1240
0 150 300 450 600 750 900 1050 1200
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 42/143 (29%), Positives = 72/143 (50%), Frame = +1
Query: 61 GKATANVVPLH-WQPNN--GLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFN 231
G A +VPL W P + T +SG AV +A SK +++ G V ++
Sbjct: 398 GYAVPLLVPLTGWLPAPLPSQIRTMTVSGTGCIRAV-WLAPSKQH-LILATSSGDVQQWH 455
Query: 232 MMTFKVMTTFMPPPPASTFLAFHPQ-DNNIIAIGMEDSTIHIYNVRVDEVKSKLKG-HQK 405
+M+ + F A T L PQ D+ ++ G ED+T+ +++V + E ++ +K H
Sbjct: 456 IMSNSLDHIFKGHTAAVTCLLVAPQSDSELLLTGSEDATVLVWHVGLRERRAHIKNAHTA 515
Query: 406 RITGLAFSTNLNILVSSGADAHLCV 480
ITG+A N +++SS DA + +
Sbjct: 516 PITGVAAGANNTLIISSSEDASIAI 540
Score = 102 (35.9 bits), Expect = 0.10, P = 0.098
Identities = 27/108 (25%), Positives = 49/108 (45%), Frame = +1
Query: 157 VPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGME 336
+ C LS++ + A G V L + T + T + L F P + +A G E
Sbjct: 746 ITCFDLSRDSQQMAIASGRHVHLMRINTPEYQCTLEGHTAGVSCLKFAP-NGEFLATGSE 804
Query: 337 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCV 480
D +HI+N+ + E+ + KGH + + + ++S+ D+ L V
Sbjct: 805 DRLVHIWNLALGEICNSFKGHTAPVVKVVVLMDSLRVISTDRDSMLLV 852
>gi|1175392|sp|Q09715|YA3A_SCHPO HYPOTHETICAL 67.3 KD TRP-ASP REPEATS
CONTAINING PROTEIN C18B11.10 IN CHROMOSOME I
>gi|2130291|pir||S58306 WD-40 repeat regulatory protein tup1
homolog - fission yeast (Schizosaccharomyces pombe)
>gi|929896|emb|CAA90594.1| (Z50728) WD repeat protein; related to
tup1 glucose repression regulatory protein [Schizosaccharomyces
pombe]
Length = 614
Frame 1 hits (HSPs): _________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 614
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 501..511
DOMO DM03865: 280..338
DOMO DM00005: BETA-TRANSDUCINFAMILYTRP-ASPREP 340..390
DOMO DM00005: BETA-TRANSDUCINFAMILYTRP-ASPREP 391..434
DOMO DM00005: BETA-TRANSDUCINFAMILYTRP-ASPREP 472..520
DOMO DM00005: BETA-TRANSDUCINFAMILYTRP-ASPREP 521..568
DOMO DM00005: BETA-TRANSDUCINFAMILYTRP-ASPREP 569..612
Entrez Repetitive region: WD1. 311..340
Entrez Repetitive region: WD2. 358..388
Entrez Repetitive region: WD3. 400..430
Entrez Repetitive region: WD4. 441..471
Entrez Repetitive region: WD5. 482..512
Entrez Repetitive region: WD6. 536..566
Entrez Repetitive region: WD7. 578..608
PFAM WD40: WD domain, G-beta repeat 304..340
PFAM WD40: WD domain, G-beta repeat 355..388
PFAM WD40: WD domain, G-beta repeat 392..430
PFAM WD40: WD domain, G-beta repeat 434..471
PFAM WD40: WD domain, G-beta repeat 474..512
PFAM WD40: WD domain, G-beta repeat 528..566
PFAM WD40: WD domain, G-beta repeat 570..608
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 417..431
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 499..513
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 595..609
PRODOM PD109954: YA3A_SCHPO 1..261
PRODOM PD010769: TUP1(3) O14432(1) O76734(1) 263..353
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 362..388
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 398..430
PRODOM PD014788: TUP1(2) RCO1(1) YA3A(1) 432..478
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 480..512
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 533..566
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 575..608
PROSITE G_BETA_REPEATS: Beta-transducin family T 375..389
PROSITE G_BETA_REPEATS: Beta-transducin family T 417..431
PROSITE G_BETA_REPEATS: Beta-transducin family T 499..513
__________________
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 31/108 (28%), Positives = 51/108 (47%), Frame = +1
Query: 157 VPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTF---MPPPPASTF---LAFHPQDNNI 318
V C+ S N Y+ + C ++F++ T K + T P P + +AF P D
Sbjct: 316 VCCVKFSNNGKYLATGCNQAANVFDVQTGKKLFTLHEESPDPSRDLYVRTIAFSP-DGKY 374
Query: 319 IAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
+ G ED I ++++ +V+ GH++ I L FS N +VS D
Sbjct: 375 LVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGSGD 423
Score = 98 (34.5 bits), Expect = 0.15, P = 0.14
Identities = 28/106 (26%), Positives = 57/106 (53%), Frame = +1
Query: 148 EEAVPCIALSKNDSYVMSACGGKVS-LFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIA 324
E+ + + S N +++S G + + L+++ T + + + T +A P D IA
Sbjct: 402 EQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILK-LEIENGVTAIAISPNDQ-FIA 459
Query: 325 IGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
+G D I +++V V+ +L+GH++ + +AFS + +IL+S D
Sbjct: 460 VGSLDQIIRVWSVSGTLVE-RLEGHKESVYSIAFSPDSSILLSGSLD 505
>gi|10764839|gb|AAG22830.1|AF306867_1 (AF306867) unknown [Aedes triseriatus]
Length = 177
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | 177
0 50 100 150
Plus Strand HSPs:
Score = 118 (41.5 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 32/105 (30%), Positives = 54/105 (51%), Frame = +1
Query: 184 DSYVMSACG-GKVSLFNMMTFKVMTTFMPPPPASTF-LAFHPQDNNIIAIGMEDSTIHIY 357
D Y++S GK+SL+++ + K P T +A+ P D IA G D I+I+
Sbjct: 3 DKYIISGSHEGKISLYSVESGKPEQVLDPQNGKFTLSIAYSP-DGKYIASGGIDGIINIF 61
Query: 358 NVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVGADAH 495
+V +V L+GH + L FS + +L+++ D H+ + AH
Sbjct: 62 DVAAGKVAQTLEGHAMSVRSLCFSPDSQMLLTASDDGHMKLYDVAH 107
Score = 94 (33.1 bits), Expect = 0.046, P = 0.045
Identities = 26/100 (26%), Positives = 47/100 (47%), Frame = +1
Query: 166 IALSKNDSYVMSA-CGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDS 342
IA S + Y+ S G +++F++ KV T + L F P D+ ++ +D
Sbjct: 40 IAYSPDGKYIASGGIDGIINIFDVAAGKVAQTLEGHAMSVRSLCFSP-DSQMLLTASDDG 98
Query: 343 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
+ +Y+V +V L GH + ++FS + SS +D
Sbjct: 99 HMKLYDVAHSDVVGTLSGHSSWVLSVSFSGDGKSFASSSSD 139
>gi|7493763|pir||T18234 beta transducin homolog - yeast (Candida albicans)
>gi|3859718|emb|CAA21992.1| (AL033501) beta transducin or WD domain
protein [Candida albicans]
Length = 981
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 981
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 123 (43.3 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 28/74 (37%), Positives = 42/74 (56%), Frame = +1
Query: 253 TTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST 432
+T +PP P S +L +H Q+ NIIA G D +I I+++ + V +GH IT L F
Sbjct: 74 STTVPPSPVS-YLTYH-QETNIIAAGYTDGSIKIWDISSNSVIINFEGHNSSITQLKFDK 131
Query: 433 NLNILVSSGADAHL 474
N LVS +D+ +
Sbjct: 132 NGTRLVSGSSDSSI 145
>gi|4972734|gb|AAD34762.1| (AF132174) unknown [Drosophila melanogaster]
>gi|7299285|gb|AAF54480.1| (AE003685) BcDNA:LD21537 gene product
[Drosophila melanogaster]
Length = 331
Frame 1 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | 331
0 150 300
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 32/104 (30%), Positives = 52/104 (50%), Frame = +1
Query: 166 IALSKNDSYVMSACG-GKVSLFNMMTFKVMTTFMPPPPASTF-LAFHPQDNNIIAIGMED 339
+ S + YV+S GK+S++++ T K T T +A+ P D IA G D
Sbjct: 133 VQFSPCNKYVISGLNDGKISMYSVETGKAEQTLDAQNGKYTLSIAYSP-DGKYIASGAID 191
Query: 340 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHL 474
I I++V +V L+GH + L FS N +L+++ D H+
Sbjct: 192 GIITIFDVAAGKVVQTLEGHAMPVRSLCFSPNSQLLLTASDDGHM 236
Score = 93 (32.7 bits), Expect = 0.25, P = 0.22
Identities = 27/100 (27%), Positives = 48/100 (48%), Frame = +1
Query: 166 IALSKNDSYVMS-ACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDS 342
IA S + Y+ S A G +++F++ KV+ T L F P ++ ++ +D
Sbjct: 176 IAYSPDGKYIASGAIDGIITIFDVAAGKVVQTLEGHAMPVRSLCFSP-NSQLLLTASDDG 234
Query: 343 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
+ +Y+V +V L GH + +AFS + SS +D
Sbjct: 235 HMKLYDVTHSDVVGTLSGHASWVLCVAFSEDGKHFASSSSD 275
>gi|12718473|emb|CAC28802.1| (AL513466) probable periodic tryptophan protein
PWP2 [Neurospora crassa]
Length = 899
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | 899
0 150 300 450 600 750
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 35/124 (28%), Positives = 61/124 (49%), Frame = +1
Query: 94 WQPNNGLLM---TNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFM 264
W +G + T SG+ C K + S+ G + ++++ ++ TF
Sbjct: 366 WDTESGFCIVTFTEHTSGITA-----CEFSKKGNVLFTSSLDGSIRAWDLIRYRNFRTFT 420
Query: 265 PPPPAS-TFLAFHPQDNNIIAIGMEDS-TIHIYNVRVDEVKSKLKGHQKRITGLAFSTNL 438
P S + +A P I+A G DS IHI++V+ ++ +L GH+ ++ LAF+ N
Sbjct: 421 APERLSFSCMAVDPS-GEIVAAGSVDSFDIHIWSVQTGQLLDRLSGHEGPVSSLAFAPNG 479
Query: 439 NILVSSGAD 465
+LVS D
Sbjct: 480 GLLVSGSWD 488
>gi|3406654|gb|AAC29438.1| (AF079369) transcriptional repressor TUP1
[Dictyostelium discoideum]
Length = 579
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 579
0 150 300 450
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.00087, P = 0.00087
Identities = 36/144 (25%), Positives = 67/144 (46%), Frame = +1
Query: 43 SEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEE--AVPCIALSKNDSYVMSACGGK 216
SE+N K T +V + P+ + D+ NL+ V C+ S + Y+ + C
Sbjct: 247 SEENGKEKGTDWLVG--YNPSVQTNLNIDLLH-NLQHNSVVCCVNFSNDGKYLATGCNRS 303
Query: 217 VSLFNMMTFKVMTTFMPPPPASTFL-----AFHPQDNNIIAIGMEDSTIHIYNVRVDEVK 381
++++ T K + F+ L F P D N +A G ED T+ ++++ +++
Sbjct: 304 AQIYDVDTGKKVHAFVDESEKDGDLYIRSVCFSP-DGNYLATGAEDKTVKVWDIHTKKIQ 362
Query: 382 SKLKGHQKRITGLAFSTNLNILVSSGAD 465
GH+ I L +S++ +VS D
Sbjct: 363 HTFYGHELDIYSLDYSSDGRFIVSGSGD 390
>gi|9931971|gb|AAB81475.2| (U92792) general transcriptional repressor Tup1
[Schizosaccharomyces pombe]
Length = 561
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 561
0 150 300 450
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 0.0017, P = 0.0017
Identities = 32/115 (27%), Positives = 53/115 (46%), Frame = +1
Query: 154 AVPC-IALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPAST------FLAFHPQDN 312
+V C + S + ++ + C +FN+ T K++T +AF P D
Sbjct: 263 SVICYVRFSADGKFLATGCNRAAMVFNVETGKLITLLQEESSKREGDLYVRSVAFSP-DG 321
Query: 313 NIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCV 480
+A G+ED I I+++ V L GH++ I L FS + LVS D +C+
Sbjct: 322 KYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCL 377
>gi|7493540|pir||T38992 WD-40 repeat regulatory protein tup1 - fission yeast
(Schizosaccharomyces pombe) >gi|5734475|emb|CAB52736.1| (AL109832)
tup1 [Schizosaccharomyces pombe]
Length = 586
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 586
0 150 300 450
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 0.0018, P = 0.0018
Identities = 32/115 (27%), Positives = 53/115 (46%), Frame = +1
Query: 154 AVPC-IALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPAST------FLAFHPQDN 312
+V C + S + ++ + C +FN+ T K++T +AF P D
Sbjct: 288 SVICYVRFSADGKFLATGCNRAAMVFNVETGKLITLLQEESSKREGDLYVRSVAFSP-DG 346
Query: 313 NIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCV 480
+A G+ED I I+++ V L GH++ I L FS + LVS D +C+
Sbjct: 347 KYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCL 402
>gi|11346443|pir||T46032 WD-40 repeat regulatory protein tup1 homolog -
Arabidopsis thaliana >gi|6723411|emb|CAB66904.1| (AL132965)
putative WD-40 repeat-protein [Arabidopsis thaliana]
Length = 317
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.0019, P = 0.0019
Identities = 29/110 (26%), Positives = 58/110 (52%), Frame = +1
Query: 148 EEAVPCIALSKNDSYVMSACGGK-VSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIA 324
E + +A S + +++SA K + L+++ T ++ T + + + F+PQ N I++
Sbjct: 71 ENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVS 130
Query: 325 IGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLC 477
G D T+ I++V + L H +T + F+ + +++VSS D LC
Sbjct: 131 -GSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDG-LC 179
Score = 90 (31.7 bits), Expect = 0.56, P = 0.43
Identities = 27/125 (21%), Positives = 53/125 (42%), Frame = +1
Query: 94 WQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVM-SACGGKVSLFNMMTFKVMTTFMPP 270
W G + I N V + S N +++ + L+N+ + K + T+
Sbjct: 182 WDSGTGHCVKTLIDDEN--PPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGH 239
Query: 271 PPASTFL--AFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNI 444
A + AF + I G ED+ +H++ + ++ KL+GH + + +A N+
Sbjct: 240 VNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENL 299
Query: 445 LVSSGAD 465
+ S D
Sbjct: 300 IASGSLD 306
>gi|11386007|gb|AAG35067.1|AF320222_1 (AF320222) APAF1 [Rattus norvegicus]
Length = 1249
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | | | 1249
0 150 300 450 600 750 900 1050 1200
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.0022, P = 0.0022
Identities = 30/111 (27%), Positives = 56/111 (50%), Frame = +1
Query: 148 EEAVPCIALSKNDSYVMS-ACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNII- 321
E+ V C A S +DSY+ + + KV +++ T K++ T+ F + N+++
Sbjct: 657 EDEVLCCAFSSDDSYIATCSVDKKVKIWDSGTGKLVHTYEEHSEQVNCCHFTNKSNHLLL 716
Query: 322 AIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHL 474
A G DS + ++++ E ++ + GH +T FS + +L S AD L
Sbjct: 717 ATGSNDSFLKLWDLNQKECRNTMFGHTNSVTHCRFSPDDELLASCSADGTL 767
>gi|4432854|gb|AAD20702.1| (AC006300) hypothetical protein [Arabidopsis
thaliana]
Length = 572
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 572
0 150 300 450
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 0.0024, P = 0.0024
Identities = 22/45 (48%), Positives = 33/45 (73%), Frame = +1
Query: 346 IHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCV 480
I +++++ EVK KL+GH ++IT LAFS N+LVSS +D LC+
Sbjct: 348 IAVFDLKNFEVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCL 392
Score = 99 (34.8 bits), Expect = 0.098, P = 0.093
Identities = 31/108 (28%), Positives = 57/108 (52%), Frame = +1
Query: 43 SEQNPTGKATA-NVVP---LHWQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACG 210
SE+ T K NV P LH QP +G M N+++ +++++ C A+ SY+ S G
Sbjct: 290 SEEKYTPKILKENVYPKPRLH-QPQSGKTMENEMA-TSVQKSTSCFAVK--GSYLFSTSG 345
Query: 211 GKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVR 366
GK+++F++ F+V T LAF + N++ D + +++ +
Sbjct: 346 GKIAVFDLKNFEVKEKLEGHDQKITCLAFS-RCFNVLVSSDSDGKLCLWSTK 396
>gi|6320779 ref|NP_010858.1| subunit of a cytoplasmic histone
acetyltransferase; Hat2p [Saccharomyces cerevisiae]
>gi|731418|sp|P39984|HAT2_YEAST HISTONE ACETYLTRANSFERASE TYPE B
SUBUNIT 2 >gi|1077611|pir||S50533 hypothetical protein YEL056w -
yeast (Saccharomyces cerevisiae) >gi|603262|gb|AAB65031.1| (U18795)
Hat2p: subunit of a cytoplasmic histone acetyltransferase
[Saccharomyces cerevisiae]
Length = 401
Frame 1 hits (HSPs): ________ _________
__________________________________________________
Database sequence: | | | | 401
0 150 300
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.0029, P = 0.0029
Identities = 25/70 (35%), Positives = 44/70 (62%), Frame = +1
Query: 268 PPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVR-VDEVKSKLKGHQKRITGLAFSTNLN- 441
P P +T LAF +N++A DS +++Y++R + E + GH+ + L FST+++
Sbjct: 251 PQPFNT-LAFSHHSSNLLAAAGMDSYVYLYDLRNMKEPLHHMSGHEDAVNNLEFSTHVDG 309
Query: 442 ILVSSGADAHL 474
++VSSG+D L
Sbjct: 310 VVVSSGSDNRL 320
Score = 83 (29.2 bits), Expect = 5.5, P = 1.0
Identities = 21/59 (35%), Positives = 34/59 (57%), Frame = +1
Query: 295 FHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAH 471
+ PQD NI+A T+ +Y+ R + ++S LK H+ L+FST + + SG+D H
Sbjct: 126 YMPQDPNIVATINGQGTVFLYS-RSEGLQSTLKFHKDNGYALSFSTLVKGRLLSGSDDH 183
>gi|1346729|sp|P49695|PKWA_THECU PUTATIVE SERINE/THREONINE-PROTEIN KINASE PKWA
>gi|886024|gb|AAB05822.1| (AF115313) PkwA [Thermomonospora curvata]
Length = 742
Frame 1 hits (HSPs): ______________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 742
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00107A: Protein kinases ATP-binding re 128..158
BLOCKS BL00107B: Protein kinases ATP-binding re 382..397
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 602..612
Entrez Domain: PROTEIN KINASE. 16..266
Entrez np-binding site: ATP (BY SIMILARITY). 22..30
Entrez binding site: ATP (BY SIMILARITY). 44
Entrez active site: BY SIMILARITY. 138
Entrez Domain: PRO/GLU/ASP-RICH (SPACER). 301..394
Entrez Repetitive region: WD 1. 455..496
Entrez Repetitive region: WD 2. 497..538
Entrez Repetitive region: WD 3. 539..580
Entrez Repetitive region: WD 4. 581..621
Entrez Repetitive region: WD 5. 622..663
Entrez Repetitive region: WD 6. 664..705
Entrez Repetitive region: WD 7. 706..742
PFAM pkinase: Eukaryotic protein kinase domai 16..264
PFAM WD40: WD domain, G-beta repeat 451..487
PFAM WD40: WD domain, G-beta repeat 491..529
PFAM WD40: WD domain, G-beta repeat 533..571
PFAM WD40: WD domain, G-beta repeat 575..613
PFAM WD40: WD domain, G-beta repeat 617..654
PFAM WD40: WD domain, G-beta repeat 658..696
PFAM WD40: WD domain, G-beta repeat 700..738
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 516..530
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 600..614
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 683..697
PRODOM PD000001: KKIT(14) CC2(14) KPC1(13) 16..263
PRODOM PD110150: PKWA_THECU 265..494
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 496..529
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 539..571
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 581..613
PRODOM PD050197: PKWA_THECU 615..661
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 663..696
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 705..736
PROSITE G_BETA_REPEATS: Beta-transducin family T 474..488
PROSITE G_BETA_REPEATS: Beta-transducin family T 516..530
PROSITE G_BETA_REPEATS: Beta-transducin family T 558..572
PROSITE G_BETA_REPEATS: Beta-transducin family T 600..614
PROSITE G_BETA_REPEATS: Beta-transducin family T 683..697
PROSITE PROTEIN_KINASE_ST: Serine/Threonine prot 134..146
__________________
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 0.0034, P = 0.0034
Identities = 32/103 (31%), Positives = 52/103 (50%), Frame = +1
Query: 157 VPCIALSKNDSYVMSAC-GGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGM 333
V +A S + S V S G + L+++ T K P LAF P D +++ G
Sbjct: 588 VYAVAFSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSP-DGSMLVHG- 645
Query: 334 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
DST+H+++V E +GH + +AFS + L++SG+D
Sbjct: 646 SDSTVHLWDVASGEALHTFEGHTDWVRAVAFSPD-GALLASGSD 688
Score = 102 (35.9 bits), Expect = 0.057, P = 0.055
Identities = 28/105 (26%), Positives = 51/105 (48%), Frame = +1
Query: 151 EAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIG 330
E V +A S + S ++ V L+++ + + + TF +AF P D ++A G
Sbjct: 628 ENVVSLAFSPDGSMLVHGSDSTVHLWDVASGEALHTFEGHTDWVRAVAFSP-DGALLASG 686
Query: 331 MEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
+D TI +++V E + L+GH + + +AF L S+ D
Sbjct: 687 SDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTTLASASED 731
Score = 97 (34.1 bits), Expect = 0.24, P = 0.22
Identities = 35/147 (23%), Positives = 69/147 (46%), Frame = +1
Query: 25 LWKWARSEQ--NP-TGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYV 195
+W+W E P + A + H + N ++T D EAV +A S S +
Sbjct: 423 VWQWTLPETPLRPDSSTAPSESADPH-ELNEPRILTTD------REAV-AVAFSPGGSLL 474
Query: 196 MSACGGK-VSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVD 372
G K + ++++ + + T +AF P D ++A G +D+T+ +++V
Sbjct: 475 AGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAFSP-DGALLASGSDDATVRLWDVAAA 533
Query: 373 EVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
E ++ +GH + +AFS + +++ S D
Sbjct: 534 EERAVFEGHTHYVLDIAFSPDGSMVASGSRD 564
Score = 87 (30.6 bits), Expect = 4.0, P = 0.98
Identities = 19/59 (32%), Positives = 32/59 (54%), Frame = +1
Query: 289 LAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
+AF P D +++A G D T ++NV + LKGH + +AFS + +++ S D
Sbjct: 549 IAFSP-DGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRD 606
>gi|2281093|gb|AAB64029.1| (AC002333) putative splicing factor [Arabidopsis
thaliana]
Length = 343
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 343
0 150 300
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.0040, P = 0.0040
Identities = 29/106 (27%), Positives = 53/106 (50%), Frame = +1
Query: 163 CIALSKNDSYVMSACG-GKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMED 339
C + ++S G L++M + TF P T ++F + I G+ D
Sbjct: 144 CCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDAADKIFTGGV-D 201
Query: 340 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCV 480
+ + ++++R E L+GHQ ITG++ S + + L+++G D LCV
Sbjct: 202 NDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCV 248
>gi|7300980|gb|AAF56118.1| (AE003742) CG4448 gene product [Drosophila
melanogaster]
Length = 743
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 743
0 150 300 450 600
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.0047, P = 0.0047
Identities = 30/106 (28%), Positives = 54/106 (50%), Frame = +1
Query: 157 VPCIALSKNDSYVMSACGG-KVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGM 333
V C+A N +Y+ + V L+ + K+M F A T LAF P D ++A
Sbjct: 584 VECVAFHPNGNYIATGSADHSVRLWCATSGKLMRVFADCRQAVTQLAFSP-DGKMLAAAG 642
Query: 334 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHL 474
E++ + I+++ ++LK H I+ L++ST+ L ++ +D L
Sbjct: 643 EETKVRIFDLAAGAQLAELKDHSASISSLSWSTHNRHLATACSDGTL 689
>gi|4754058|gb|AAD28807.1|AF072879_1 (AF072879) SOCS box-containing WD protein
SWiP-1 [Gallus gallus]
Length = 421
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 421
0 150 300
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.0056, P = 0.0056
Identities = 25/85 (29%), Positives = 45/85 (52%), Frame = +1
Query: 211 GKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSK- 387
G++ ++++ T K++ M L F P + I+ D T+ +++++ D K
Sbjct: 150 GRIKIWDVYTGKLLLNLMDHTEVVRDLTFAPDGSLILVSASRDKTLRVWDLKDDGNMMKV 209
Query: 388 LKGHQKRITGLAFSTNLNILVSSGA 462
L+GHQ + G AFS + +IL S GA
Sbjct: 210 LRGHQNWVYGCAFSPDSSILCSVGA 234
>gi|10437122|dbj|BAB14986.1| (AK024754) unnamed protein product [Homo sapiens]
>gi|11139242|gb|AAG31639.1|AF309553_1 (AF309553) meiotic
recombination protein REC14 [Homo sapiens]
Length = 305
Frame 1 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | | || 305
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.016, P = 0.015
Identities = 29/100 (29%), Positives = 49/100 (49%), Frame = +1
Query: 166 IALSKNDSYVMS-ACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDS 342
IA S + Y+ S A G +++F++ T K++ T L F P D+ ++ +D
Sbjct: 154 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDG 212
Query: 343 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
I IY+V+ + L GH + +AF + VSS +D
Sbjct: 213 YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD 253
Score = 95 (33.4 bits), Expect = 0.13, P = 0.12
Identities = 26/103 (25%), Positives = 51/103 (49%), Frame = +1
Query: 166 IALSKNDSYVMSACG-GKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDS 342
+A S + Y+ + GKV++F + + K + +A+ P D +A G D
Sbjct: 112 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDG 170
Query: 343 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHL 474
I+I+++ ++ L+GH I L FS + +LV++ D ++
Sbjct: 171 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 214
>gi|11139244|gb|AAG31640.1|AF309554_1 (AF309554) meiotic recombination protein
REC14 [Mus musculus]
Length = 305
Frame 1 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | | || 305
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.016, P = 0.015
Identities = 29/100 (29%), Positives = 49/100 (49%), Frame = +1
Query: 166 IALSKNDSYVMS-ACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDS 342
IA S + Y+ S A G +++F++ T K++ T L F P D+ ++ +D
Sbjct: 154 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDG 212
Query: 343 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
I IY+V+ + L GH + +AF + VSS +D
Sbjct: 213 YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD 253
Score = 95 (33.4 bits), Expect = 0.13, P = 0.12
Identities = 26/103 (25%), Positives = 51/103 (49%), Frame = +1
Query: 166 IALSKNDSYVMSACG-GKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDS 342
+A S + Y+ + GKV++F + + K + +A+ P D +A G D
Sbjct: 112 LAFSPDSQYLATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDG 170
Query: 343 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHL 474
I+I+++ ++ L+GH I L FS + +LV++ D ++
Sbjct: 171 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 214
>gi|7020724|dbj|BAA91248.1| (AK000552) unnamed protein product [Homo sapiens]
Length = 334
Frame 1 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | 334
0 150 300
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.018, P = 0.018
Identities = 35/143 (24%), Positives = 65/143 (45%), Frame = +1
Query: 37 ARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGK 216
AR++ P+ AT + P +PN L T ++G +AV + S N ++ S+ K
Sbjct: 13 ARAQPTPSSSATQSK-PTPVKPNYALKFT--LAGHT--KAVSSVKFSPNGEWLASSSADK 67
Query: 217 -VSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLK 393
+ ++ K T + +A+ D+N++ +D T+ I++V + LK
Sbjct: 68 LIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 126
Query: 394 GHQKRITGLAFSTNLNILVSSGAD 465
GH + F+ N++VS D
Sbjct: 127 GHSNYVFCCNFNPQSNLIVSGSFD 150
Score = 91 (32.0 bits), Expect = 0.45, P = 0.36
Identities = 29/116 (25%), Positives = 59/116 (50%), Frame = +1
Query: 130 ISGVNLEEAVPCIALSKNDSYVMSACGGK-VSLFNMMTFKVMTTFMPPPPASTFLAFHPQ 306
ISG L + +A S + + ++SA K + ++++ + K + T F+PQ
Sbjct: 83 ISGHKL--GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 307 DNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLC 477
N I++ G D ++ I++V+ + L H ++ + F+ + +++VSS D LC
Sbjct: 141 SNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LC 195
Score = 89 (31.3 bits), Expect = 0.80, P = 0.55
Identities = 29/125 (23%), Positives = 52/125 (41%), Frame = +1
Query: 94 WQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSAC-GGKVSLFNMMTFKVMTTFMPP 270
W +G + I N V + S N Y+++A + L++ K + T+
Sbjct: 198 WDTASGQCLKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 271 PPAS--TFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNI 444
F F I G ED+ ++I+N++ E+ KL+GH + A NI
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 315
Query: 445 LVSSGAD 465
+ S+ +
Sbjct: 316 IASAALE 322
>gi|6319675 ref|NP_009757.1| Probable transcription-associated factor protein,
probable -transducin type; Taf90p [Saccharomyces cerevisiae]
>gi|586324|sp|P38129|T2D4_YEAST TRANSCRIPTION INITIATION FACTOR
TFIID 90 KD SUBUNIT (TAFII-90) >gi|419854|pir||S34023 TATA
box-binding protein-associated factor chain TAFII90 - yeast
(Saccharomyces cerevisiae) >gi|311674|emb|CAA79685.1| (Z21487)
unknown [Saccharomyces cerevisiae] >gi|536569|emb|CAA85160.1|
(Z36067) ORF YBR198c [Saccharomyces cerevisiae]
>gi|1091232|prf||2020425A TATA box-binding protein-associated
factor [Saccharomyces cerevisiae]
Length = 798
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 798
0 150 300 450 600 750
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 27/104 (25%), Positives = 52/104 (50%), Frame = +1
Query: 157 VPCIALSKNDSYVMSACGGKVS-LFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGM 333
V C++ N YV + K ++++ T + F+ +A P D ++ G
Sbjct: 612 VDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCP-DGRWLSTGS 670
Query: 334 EDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTNLNILVSSGAD 465
ED I+++++ + +++GH K I L++S N+L+S GAD
Sbjct: 671 EDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGAD 715
>gi|2462071|emb|CAA05000.1| (AJ001774) guanine nucleotide-binding protein beta
subunit-like protein [Anabaena PCC7120]
Length = 228
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | 228
0 50 100 150 200
Plus Strand HSPs:
Score = 99 (34.8 bits), Expect = 0.021, P = 0.021
Identities = 25/85 (29%), Positives = 43/85 (50%), Frame = +1
Query: 211 GKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKL 390
G + +N+ T K++ TF A + LA D I+ G D+ I ++N+ + + S L
Sbjct: 79 GTIKTWNLHTGKLLHTFKSHTDAVSSLAMSV-DGRILVSGSWDNRIKLWNLETNTLISTL 137
Query: 391 KGHQKRITGLAFSTNLNILVSSGAD 465
GH+ + +A S N ++ S AD
Sbjct: 138 DGHKDDVQTVAISPNGKLVASGSAD 162
>gi|12230771|sp|Q9UGP9|WDR5_HUMAN WD-REPEAT PROTEIN 5
>gi|6714707|emb|CAB66159.1| (AJ011376) hypothetical protein [Homo
sapiens]
Length = 362
Frame 1 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | 362
0 150 300
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.021, P = 0.021
Identities = 35/143 (24%), Positives = 65/143 (45%), Frame = +1
Query: 37 ARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGK 216
AR++ P+ AT + P +PN L T ++G +AV + S N ++ S+ K
Sbjct: 41 ARAQPTPSSSATQSK-PTPVKPNYALKFT--LAGHT--KAVSSVKFSPNGEWLASSSADK 95
Query: 217 -VSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLK 393
+ ++ K T + +A+ D+N++ +D T+ I++V + LK
Sbjct: 96 LIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 154
Query: 394 GHQKRITGLAFSTNLNILVSSGAD 465
GH + F+ N++VS D
Sbjct: 155 GHSNYVFCCNFNPQSNLIVSGSFD 178
Score = 91 (32.0 bits), Expect = 0.51, P = 0.40
Identities = 29/116 (25%), Positives = 59/116 (50%), Frame = +1
Query: 130 ISGVNLEEAVPCIALSKNDSYVMSACGGK-VSLFNMMTFKVMTTFMPPPPASTFLAFHPQ 306
ISG L + +A S + + ++SA K + ++++ + K + T F+PQ
Sbjct: 111 ISGHKL--GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 168
Query: 307 DNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLC 477
N I++ G D ++ I++V+ + L H ++ + F+ + +++VSS D LC
Sbjct: 169 SNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LC 223
Score = 89 (31.3 bits), Expect = 0.90, P = 0.59
Identities = 29/125 (23%), Positives = 52/125 (41%), Frame = +1
Query: 94 WQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSAC-GGKVSLFNMMTFKVMTTFMPP 270
W +G + I N V + S N Y+++A + L++ K + T+
Sbjct: 226 WDTASGQCLKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 283
Query: 271 PPAS--TFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNI 444
F F I G ED+ ++I+N++ E+ KL+GH + A NI
Sbjct: 284 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 343
Query: 445 LVSSGAD 465
+ S+ +
Sbjct: 344 IASAALE 350
>gi|2285945|emb|CAA04169.1| (AJ000536) COP1 protein [Arabidopsis thaliana]
Length = 89
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 89
0 20 40 60 80
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.033, P = 0.032
Identities = 19/55 (34%), Positives = 32/55 (58%), Frame = +1
Query: 310 NNIIAIGMEDSTIHIYNVR-VDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHL 474
+N IA+G D IH Y++R + + GH+K ++ + F +N N L S+ D+ L
Sbjct: 13 SNYIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSN-NELASASTDSTL 67
>gi|5454036 ref|NP_006444.1| transducin (beta)-like 3; similar to
beta-transducin superfamily proteins [Homo sapiens]
>gi|3122853|sp|Q12788|TBL3_HUMAN WD-REPEAT PROTEIN SAZD (TRANSDUCIN
BETA-LIKE 3 PROTEIN) >gi|1082863|pir||A49367 transducin homolog
sazD - human >gi|414536|gb|AAA18945.1| (U02609) transducin-like
protein [Homo sapiens]
Length = 519
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 519
0 150 300 450
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.036, P = 0.035
Identities = 25/99 (25%), Positives = 47/99 (47%), Frame = +1
Query: 205 CGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGME-DSTIHIYNVRVDEVK 381
C G V +++++ F P +AFHP ++ D+ I +++++
Sbjct: 15 CDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSATDAAIRVWSLQDRSCL 74
Query: 382 SKLKGHQKRITGLAFSTNLNILVSSGADAHLCVGADAHLC 501
+ L H +T LAFS + + ++SSG D +C+ D C
Sbjct: 75 AVLTAHYSAVTSLAFSADGHTMLSSGRDK-ICIIWDLQSC 113
>gi|6857755 ref|NP_033814.1| apoptotic protease activating factor 1 [Mus
musculus] >gi|3694813|gb|AAC62458.1| (AF064071) apoptotic protease
activating factor 1 [Mus musculus]
Length = 1238
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | | | 1238
0 150 300 450 600 750 900 1050 1200
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 0.042, P = 0.041
Identities = 29/111 (26%), Positives = 53/111 (47%), Frame = +1
Query: 148 EEAVPCIALSKNDSYVMSACGG--KVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNII 321
E+ V C A S +DSY+ + C KV +++ T K++ T+ F N+++
Sbjct: 646 EDEVLCCAFSSDDSYI-ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNSSNHLL 704
Query: 322 -AIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHL 474
A G D + ++++ E ++ + GH + FS + +L S AD L
Sbjct: 705 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 756
>gi|3132790|gb|AAC16380.1| (AF063022) CACK protein [Crithidia fasciculata]
Length = 316
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | | | 316
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.056, P = 0.054
Identities = 26/104 (25%), Positives = 56/104 (53%), Frame = +1
Query: 157 VPCIALSKNDSYVMSACGGK-VSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGM 333
V C++L+ Y ++A + ++++ T + F+ +AF P D I++ G
Sbjct: 68 VSCVSLAHATDYALTASWDHAIRMWDLRTGQSQRKFLKHTKDVLAVAFSPDDRLIVSAG- 126
Query: 334 EDSTIHIYNVRVDEVKSKLK-GHQKRITGLAFSTNLNI-LVSSGA 462
D+ I ++NV + + L+ GH+ ++ + FS +L++ +V SG+
Sbjct: 127 RDNVIRVWNVAGECMHEFLRDGHEDWVSSICFSPSLDLPIVVSGS 171
>gi|3859574|gb|AAC72850.1| (AF100287) activated protein kinase C receptor
homolog [Trypanosoma vivax]
Length = 317
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.056, P = 0.055
Identities = 32/102 (31%), Positives = 52/102 (50%), Frame = +1
Query: 166 IALSKNDSYVMSACGGK-VSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDS 342
+ALS N S+ +SA + + L+N+ + F+ +AF P DN I G D
Sbjct: 73 VALSNNGSFAVSASWDRSMRLWNLQNGQCQYKFLGHTRDVLSVAFSP-DNRQIVSGSRDR 131
Query: 343 TIHIYNVRVDEVKSKLKG-HQKRITGLAFS--TNLNILVSSGAD 465
T+ ++NV+ E L G H ++ + FS T+ ++VS G D
Sbjct: 132 TLRVWNVK-GECMHTLNGAHSDWVSCVRFSPATDKPLIVSGGWD 174
>gi|7462077|pir||G72202 beta transducin-related protein - Thermotoga maritima
(strain MSB8) >gi|4982430|gb|AAD36908.1|AE001822_1 (AE001822) beta
transducin-related protein [Thermotoga maritima]
Length = 580
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 580
0 150 300 450
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.057, P = 0.055
Identities = 34/135 (25%), Positives = 64/135 (47%), Frame = +1
Query: 76 NVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMT 255
N V + W +NG L+ + + + +A +NDS + A K + N+ +V+
Sbjct: 206 NTVKV-WNASNGNLVLQYDHVITVND----VAFLENDSLIFVADDYKAVVLNIQKNEVVK 260
Query: 256 TFMPPPPASTFLAFHPQDNNIIAI-GMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST 432
+ + F+ F D+ IA GM D T+ ++N + E++ L GHQ + +A S+
Sbjct: 261 SI---DAHNNFVLFVSSDDGSIATYGM-DKTVKVWNANL-ELQYSLYGHQLSVNTVALSS 315
Query: 433 NLNILVSSGADAHLCV 480
+ +VS D + +
Sbjct: 316 DRKFIVSGSDDREILI 331
>gi|12739504 ref|XP_007918.2| transducin (beta)-like 3 [Homo sapiens]
Length = 774
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 774
0 150 300 450 600 750
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.060, P = 0.058
Identities = 25/99 (25%), Positives = 47/99 (47%), Frame = +1
Query: 205 CGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGME-DSTIHIYNVRVDEVK 381
C G V +++++ F P +AFHP ++ D+ I +++++
Sbjct: 147 CDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSATDAAIRVWSLQDRSCL 206
Query: 382 SKLKGHQKRITGLAFSTNLNILVSSGADAHLCVGADAHLC 501
+ L H +T LAFS + + ++SSG D +C+ D C
Sbjct: 207 AVLTAHYSAVTSLAFSADGHTMLSSGRDK-ICIIWDLQSC 245
>gi|11358924|pir||T51507 WD40-repeat protein - Arabidopsis thaliana
>gi|9755727|emb|CAC01839.1| (AL391147) WD40-repeat protein
[Arabidopsis thaliana]
Length = 876
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 876
0 150 300 450 600 750
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.069, P = 0.067
Identities = 26/110 (23%), Positives = 50/110 (45%), Frame = +1
Query: 172 LSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIH 351
+S + S++ ACG +++ + V +T T LA P D + + G I
Sbjct: 27 VSSDGSFIACACGDVINIVDSTDSSVKSTIEGESDTLTALALSPDDKLLFSAG-HSRQIR 85
Query: 352 IYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCV-GADAHLC 501
++++ + KGH+ + G+A + +L ++GAD + V D C
Sbjct: 86 VWDLETLKCIRSWKGHEGPVMGMACHASGGLLATAGADRKVLVWDVDGGFC 136
>gi|10177096|dbj|BAB10430.1| (AB009055) Notchless protein homolog [Arabidopsis
thaliana]
Length = 473
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 473
0 150 300 450
Plus Strand HSPs:
Score = 99 (34.8 bits), Expect = 0.076, P = 0.073
Identities = 30/124 (24%), Positives = 59/124 (47%), Frame = +1
Query: 94 WQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGK-VSLFNMMTFKVMTTFMPP 270
W+P+ ++G ++ V + S + ++ SA K V L+N +T + +T F
Sbjct: 344 WEPSVSKQPKKRLTGH--QQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGH 401
Query: 271 PPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILV 450
+ D+ ++ G +DST+ I+ +R ++K L GH + + +S + +V
Sbjct: 402 V-GPVYQVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVV 460
Query: 451 SSGAD 465
S G D
Sbjct: 461 SGGKD 465
>gi|7290219|gb|AAF45681.1| (AE003422) EG:63B12.7 gene product [Drosophila
melanogaster]
Length = 506
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 506
0 150 300 450
Plus Strand HSPs:
Score = 99 (34.8 bits), Expect = 0.083, P = 0.080
Identities = 42/160 (26%), Positives = 75/160 (46%), Frame = +1
Query: 4 GSNGIQKLWKWARSEQN-PTGKATANVVPLHWQPNNGLLMTNDISGVN-LEEAVPCIALS 177
G +G +W S TG + PL+ ++GL +T+ SG+ + + ++L
Sbjct: 142 GKDGAVLVWDLTFSAAPLDTGGGKDSTEPLYSFNDHGLAVTDLYSGIGGIRSYLYTVSLD 201
Query: 178 KNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDST-IHI 354
+ V CGG V L +++ F V + T + D + ME++ +
Sbjct: 202 RCCK-VYDLCGG-VLLLSVV-FPVALHSVIVSKMETRVYVGSSDGKVFVFNMENAPRMKE 258
Query: 355 YNVRVDEVKSKLKGHQ--KRITGLAFSTNLNILVSSGADAHLCV 480
Y++ +E+++ + GH K IT LA + + LVS G D +CV
Sbjct: 259 YHLEGEEIQAFV-GHTYGKAITCLALNISATTLVSGGEDNQVCV 301
>gi|7493467|pir||T41454 transcription initiation factor TFIID chain taf72 -
fission yeast (Schizosaccharomyces pombe)
>gi|2385410|dbj|BAA22162.1| (AB001372) TFIID subunit taf72p
[Schizosaccharomyces pombe] >gi|3859081|emb|CAA21958.1| (AL033406)
tfiid subunit taf72p. [Schizosaccharomyces pombe]
Length = 643
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 643
0 150 300 450 600
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.086, P = 0.083
Identities = 26/103 (25%), Positives = 48/103 (46%), Frame = +1
Query: 157 VPCIALSKNDSYVMSACGGKVS-LFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGM 333
V C+ N +YV++ K L+++ + F T +A P D + +A
Sbjct: 466 VDCVTFHPNSAYVLTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIAP-DGHTMASAD 524
Query: 334 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
+ IH++++ ++GH+ I L+FS +LVS G+D
Sbjct: 525 SEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSRESTVLVSGGSD 568
>gi|11544739|emb|CAC17645.1| (AL121993) dJ776P7.2 (WD repeat domain 3) [Homo
sapiens]
Length = 935
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 935
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.10, P = 0.098
Identities = 30/107 (28%), Positives = 55/107 (51%), Frame = +1
Query: 145 LEEAVPCIALSKNDSYVMSAC-GGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNII 321
L++ V C+ S + ++ G + +F++++ + TF A T L + Q +
Sbjct: 59 LKQEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITTLKYD-QLGGRL 117
Query: 322 AIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
A G +D+ I +++V + +LKGH+ IT F N+LV+SG D
Sbjct: 118 ASGSKDTDIIVWDVINESGLYRLKGHKDAITQALFLREKNLLVTSGKD 165
>gi|5803221 ref|NP_006775.1| WD repeat-containing protein 3 [Homo sapiens]
>gi|12230773|sp|Q9UNX4|WDR3_HUMAN WD-REPEAT PROTEIN 3
>gi|5639663|gb|AAD45865.1|AF083217_1 (AF083217) WD repeat protein
WDR3 [Homo sapiens]
Length = 943
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 943
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.10, P = 0.099
Identities = 30/107 (28%), Positives = 55/107 (51%), Frame = +1
Query: 145 LEEAVPCIALSKNDSYVMSAC-GGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNII 321
L++ V C+ S + ++ G + +F++++ + TF A T L + Q +
Sbjct: 64 LKQEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITTLKYD-QLGGRL 122
Query: 322 AIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
A G +D+ I +++V + +LKGH+ IT F N+LV+SG D
Sbjct: 123 ASGSKDTDIIVWDVINESGLYRLKGHKDAITQALFLREKNLLVTSGKD 170
>gi|12722710 ref|XP_001989.2| WD repeat-containing protein 3 [Homo sapiens]
Length = 957
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 957
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.11, P = 0.10
Identities = 30/107 (28%), Positives = 55/107 (51%), Frame = +1
Query: 145 LEEAVPCIALSKNDSYVMSAC-GGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNII 321
L++ V C+ S + ++ G + +F++++ + TF A T L + Q +
Sbjct: 78 LKQEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITTLKYD-QLGGRL 136
Query: 322 AIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
A G +D+ I +++V + +LKGH+ IT F N+LV+SG D
Sbjct: 137 ASGSKDTDIIVWDVINESGLYRLKGHKDAITQALFLREKNLLVTSGKD 184
>gi|1076382|pir||S49821 PRL2 protein - Arabidopsis thaliana (fragment)
Length = 431
Frame 1 hits (HSPs): ____________
Annotated Domains: ___ __
__________________________________________________
Database sequence: | | | | 431
0 150 300
__________________
Annotated Domains:
PROSITE G_BETA_REPEATS: Beta-transducin family T 221..235
PROSITE G_BETA_REPEATS: Beta-transducin family T 262..276
__________________
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.12, P = 0.11
Identities = 29/103 (28%), Positives = 49/103 (47%), Frame = +1
Query: 157 VPCIALSKNDSYVMSACGGKVSLFNMMTFKV-MTTFMPPPPASTFLAF-HPQDNNIIAIG 330
V C+AL V++ GG+ S+ + + M F+ P + F P D +I G
Sbjct: 209 VYCLALHPTLDVVLT--GGRDSVCRVWDIRTKMQIFVLPHDSDVFSVLARPTDPQVIT-G 265
Query: 331 MEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
DSTI +++R + + + H+K + +A N VS+ AD
Sbjct: 266 SHDSTIKFWDLRYGKSMATITNHKKTVRAMALHPKENDFVSASAD 310
>gi|12311748|emb|CAC22605.1| (AL512943) periodic tryptophan protein homolog; WD
repeat protein [Schizosaccharomyces pombe]
Length = 854
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | 854
0 150 300 450 600 750
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.12, P = 0.11
Identities = 29/124 (23%), Positives = 62/124 (50%), Frame = +1
Query: 94 WQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSAC-GGKVSLFNMMTFKVMTTFMPP 270
W N+G + ++ AV + SK + + S+ G V ++++ ++ TF P
Sbjct: 366 WDMNSGFCI---VTFTQHTSAVSGLCFSKRGNVLFSSSLDGSVRAWDLIRYRNFRTFTAP 422
Query: 271 PPAS-TFLAFHPQDNNIIAIGMEDS-TIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNI 444
+ +A P I+ G +DS I +++V+ ++ L GH+ ++ L+F+++ ++
Sbjct: 423 SRVQFSCIAVDPS-GEIVCAGSQDSFEIFMWSVQTGQLLETLAGHEGPVSSLSFNSSGSL 481
Query: 445 LVSSGAD 465
L S D
Sbjct: 482 LASGSWD 488
>gi|11994619|dbj|BAB02756.1| (AB022217) PP1/PP2A phosphatases pleiotropic
regulator PRL2 [Arabidopsis thaliana]
Length = 476
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 476
0 150 300 450
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.14, P = 0.13
Identities = 29/103 (28%), Positives = 49/103 (47%), Frame = +1
Query: 157 VPCIALSKNDSYVMSACGGKVSLFNMMTFKV-MTTFMPPPPASTFLAF-HPQDNNIIAIG 330
V C+AL V++ GG+ S+ + + M F+ P + F P D +I G
Sbjct: 257 VYCLALHPTLDVVLT--GGRDSVCRVWDIRTKMQIFVLPHDSDVFSVLARPTDPQVIT-G 313
Query: 331 MEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
DSTI +++R + + + H+K + +A N VS+ AD
Sbjct: 314 SHDSTIKFWDLRYGKSMATITNHKKTVRAMALHPKENDFVSASAD 358
>gi|3915814|sp|Q39190|PRL2_ARATH PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR
PRL2 >gi|2916744|emb|CAA58033.1| (X82826) PRL2 [Arabidopsis
thaliana]
Length = 479
Frame 1 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 479
0 150 300 450
__________________
Annotated Domains:
Entrez Repetitive region: WD1. 120..150
Entrez Repetitive region: WD2. 162..192
Entrez Repetitive region: WD3. 204..234
Entrez Repetitive region: WD4. 245..275
Entrez Repetitive region: WD5. 287..316
Entrez Repetitive region: WD6. 329..358
Entrez Repetitive region: WD7. 378..408
Entrez Repetitive region: WD1. 168..198
Entrez Repetitive region: WD2. 210..240
Entrez Repetitive region: WD3. 252..282
Entrez Repetitive region: WD4. 293..323
Entrez Repetitive region: WD5. 335..364
Entrez Repetitive region: WD6. 377..406
Entrez Repetitive region: WD7. 426..456
PFAM WD40: WD domain, G-beta repeat 160..198
PFAM WD40: WD domain, G-beta repeat 202..240
PFAM WD40: WD domain, G-beta repeat 244..282
PFAM WD40: WD domain, G-beta repeat 284..323
PFAM WD40: WD domain, G-beta repeat 327..364
PFAM WD40: WD domain, G-beta repeat 369..406
PFAM WD40: WD domain, G-beta repeat 419..456
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 185..199
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 227..241
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 310..324
PRODOM PD034816: PRL1(1) PRL2(1) 10..164
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 166..198
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 207..240
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 250..282
PRODOM PD000061: PEX7(6) WD66(5) CORO(5) 294..366
PRODOM PD064284: PRL1(1) PRL2(1) Q18295(1) 368..405
PRODOM PD010529: PRL1(3) 407..477
PROSITE G_BETA_REPEATS: Beta-transducin family T 269..283
PROSITE G_BETA_REPEATS: Beta-transducin family T 310..324
__________________
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.14, P = 0.13
Identities = 29/103 (28%), Positives = 49/103 (47%), Frame = +1
Query: 157 VPCIALSKNDSYVMSACGGKVSLFNMMTFKV-MTTFMPPPPASTFLAF-HPQDNNIIAIG 330
V C+AL V++ GG+ S+ + + M F+ P + F P D +I G
Sbjct: 257 VYCLALHPTLDVVLT--GGRDSVCRVWDIRTKMQIFVLPHDSDVFSVLARPTDPQVIT-G 313
Query: 331 MEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGAD 465
DSTI +++R + + + H+K + +A N VS+ AD
Sbjct: 314 SHDSTIKFWDLRYGKSMATITNHKKTVRAMALHPKENDFVSASAD 358
>gi|5103844|gb|AAD39674.1|AC007591_39 (AC007591) Strong similarity to gb|X95263
Periodic tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains. [Arabidopsis thaliana]
Length = 893
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | 893
0 150 300 450 600 750
Plus Strand HSPs:
Score = 99 (34.8 bits), Expect = 0.17, P = 0.16
Identities = 34/136 (25%), Positives = 57/136 (41%), Frame = +1
Query: 58 TGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMM 237
TG A N V + W +G N A+ +A N S + ++ G V ++
Sbjct: 406 TG-ADDNKVKV-WNVMSGTCFITFTEHTNAVTALHFMA--DNHSLLSASLDGTVRAWDFK 461
Query: 238 TFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDS-TIHIYNVRVDEVKSKLKGHQKRIT 414
+K T+ P P +++ G DS I +++ + ++K L GH+ +
Sbjct: 462 RYKNYKTYTTPTPRQFVSLTADPSGDVVCAGTLDSFEIFVWSKKTGQIKDILSGHEAPVH 521
Query: 415 GLAFSTNLNILVSSGAD 465
GL FS +L SS D
Sbjct: 522 GLMFSPLTQLLASSSWD 538
WARNING: HSPs involving 164 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.356 0.158 0.703
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.363 0.163 0.553
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.318 0.132 0.406
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.337 0.143 0.476
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.364 0.161 0.681
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.353 0.157 0.531
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 167 166 10. 75 3 12 22 0.10 34
30 0.10 37
+2 0 167 166 10. 75 3 12 22 0.10 34
30 0.10 37
+1 0 167 166 10. 75 3 12 22 0.10 34
30 0.10 37
-1 0 167 167 10. 75 3 12 22 0.11 34
30 0.11 37
-2 0 167 166 10. 75 3 12 22 0.10 34
30 0.10 37
-3 0 167 166 10. 75 3 12 22 0.10 34
30 0.10 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 214
No. of states in DFA: 596 (59 KB)
Total size of DFA: 217 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 173.44u 1.17s 174.61t Elapsed: 00:00:30
Total cpu time: 173.51u 1.22s 174.73t Elapsed: 00:00:30
Start: Wed Feb 6 14:14:56 2002 End: Wed Feb 6 14:15:26 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000