Reference SNP(refSNP) Cluster Report: rs2746985

Reference SNP(refSNP) Cluster Report: rs2746985

refSNP ID: rs2746985
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	100/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	G/T
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_007229.2:c.610-1433C>A
NT_011520.11:g.22672513G>T

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss3877618 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2746985 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss3877618	SC_JCM\|AL049758.11_82896		fwd/B	G/T	agctcagaagcccaagacacatagctgtgg	ttcagcgcccagcatctggaggatactgct	09/25/01	10/10/03	100	Genomic			unknown

Fasta sequence (Legend)

 CTCCTAAGAT GGCTGGGCTT GGGTCCTCTG TGCCAGGAAA AGGCCACCCC TGCCAGGGCT
 GGGGCATGCC CAGCAGAGAA AGAGCTCCAC AGCGCTGTGG CTATTCCCCT ATTCCCCACA
 GCCATCCACA CTGCCCGTGC CCACTACCTG GCAGCCCTGC ATGGGAGCCT AGCTCAGAAG
 CCCAAGACAC ATAGCTGTGG
 K
 TTCAGCGCCC AGCATCTGGA GGATACTGCT GAAGTGACAC AGAGCAGCCC CATCTCAGGA
 GCCTTCAAGA CACAATAGCC TCCCGGGAGC TCTCAGGGTA CTCAGTGGCA ACAAGATGCT
 CCACCTCTGG GCTGCCCCTG CCCTCAGCCT GTGCCGACCC TGCTAGCCCC AAGTCCTGCC
 CCCAGCACAG GCCAGGTACT

GeneView

GeneView via analysis of contig annotation: PACSIN2 protein kinase C and casein kinase substrate in neurons 2

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_011520->NM_007229

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_011520->NM_007229->NP_009160	22672513	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs2746985 maps exactly once on NCBI human chromosome 22

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
22	NW_001838747.2	588271	26240901	minus	C	alt_assembly_8	HuRef	HuRef	view	200
22	NW_927650.1	372128	27192495	plus	G	alt_assembly_1	Celera	Celera	view	200
22	NT_011520.11	22672513	41611944	plus	G	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
AL049758 Z82199

dbSNP Blast Analysis
GenBank HTGS Finished:
AL049758.11

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .