Reference SNP(refSNP) Cluster Report: rs841155

Reference SNP(refSNP) Cluster Report: rs841155

refSNP ID: rs841155
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	86/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	T
Clinical Association:	unknown

HGVS Names

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss1619319 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs841155 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss1184960	KWOK\|OVLP-000804-607658	fwd/B	C/T	gatacagtgaaattaggcaacaaatgttaa	ttccatctctaggaaagaagcagcaagagg	09/02/00	10/10/03	86	Genomic	99 %
ss1619319	KWOK\|OVLP-000925-539918	fwd/B	C/T	gatacagtgaaattaggcaacaaatgttaa	ttccatctctaggaaagaagcagcaagagg	10/04/00	10/25/06	87	Genomic	99 %
ss1619468	KWOK\|OVLP-000925-541262	fwd/B	C/T	gatacagtgaaattaggcaacaaatgttaa	ttccatctctaggaaagaagcagcaagagg	10/04/00	10/10/03	87	Genomic	99 %
ss3731228	SC_JCM\|AC026038.4_115011	fwd/B	C/T	gatacagtgaaattaggcaacaaatgttaa	ttccatctctaggaaagaagcagcaagagg	09/25/01	10/10/03	100	Genomic	unknown
ss76423289	AFFY\|AFFY_6_1M_SNP_A-8284081	rev/T	A/G	tttcctagagatggaa	ttaacatttgttgcct	08/28/07	08/30/07	129	Genomic	unknown

Fasta sequence (Legend)

 AGTTTGAAAG GTATTGCCAA AGGCTAGAAA CATATTTTAT TACATTCTTA AGTTATGAGT
 AACATAAACA AAAAGATGCT CAGTCTCAGC TGTCCCATCT GCTTAACAGT ATTACATGCT
 GCCTCATATC AGTCAGAGGA TTAATAGAGG TGGTATACAC AAAAGTGTCT GATACAGTGA
 AATTAGGCAA CAAATGTTAA
 Y
 TTCCATCTCT AGGAAAGAAG CAGCAAGAGG ACAAATAGGG TGATACGACG ATTGTCTCCT
 GCAGCAAGGA GTAGAAAACA ATTCTACACA TTTAGGGTAC TTGAAATGTT ATATAATATT
 AAAGGTCCAG AAAATGTATA ATTTATCACA ATGTTAGAAA CAGTGCTAAA TGCTATTTCA
 TTAATTCTAA TACATTATGA

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs841155 maps exactly once on NCBI human chromosome 1

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
1	NW_001838554.1	1099218	218292561	minus	A	alt_assembly_8	HuRef	HuRef	view	200
1	NW_927572.1	4553717	221196603	minus	A	alt_assembly_1	Celera	Celera	view	200
1	NT_004836.17	12661867	245970701	minus	A	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
AC026038 AC025115 AC026038.4 AL357039 AL357039.4 AL357039.5 AL450999

dbSNP Blast Analysis

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	T/T	HWP	C	T
ss1619319	CEPH		184	AF					0.010	0.990

	HapMap-CEU	European	120	IG			1.000			1.000

	HapMap-HCB	Asian	90	IG			1.000			1.000

	HapMap-JPT	Asian	88	IG		0.068	0.932	1.000	0.034	0.966

	HapMap-YRI	Sub-Saharan African	118	IG	0.051	0.237	0.712	0.251	0.169	0.831

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.104+/-0.203	270	210	0	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .