BLASTP 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= SPy_0227 hypothetical protein
(69 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,515,104 sequences; 2,222,278,849 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_268589.1| hypothetical protein SPy_0227 [Streptococc... 136 5e-31
ref|NP_606503.1| hypothetical protein spyM18_0213 [Streptoc... 125 7e-28
ref|ZP_00876238.1| regulatory protein, MarR [Streptococcus ... 82 8e-15
ref|YP_001199405.1| Transcriptional regulator [Streptococcu... 82 1e-14
ref|YP_138961.1| transcriptional regulator, MarR family [St... 66 9e-10
ref|NP_721321.1| putative transcriptional regulator [Strept... 63 7e-09
ref|NP_688330.1| transcriptional regulator, MarR family [St... 59 1e-07
ref|NP_735839.1| hypothetical protein gbs1402 [Streptococcu... 59 1e-07
ref|ZP_02919484.1| hypothetical protein STRINF_00326 [Strep... 54 5e-06
ref|ZP_02868655.1| hypothetical protein CLOSPI_02498 [Clost... 42 0.018
ref|ZP_02429703.1| hypothetical protein CLORAM_03126 [Clost... 40 0.043
ref|ZP_01822773.1| transcriptional regulator, MarR family p... 40 0.054
ref|YP_001034458.1| Multiple antibiotic resistance operon t... 40 0.070
ref|YP_001836613.1| transcriptional regulator, MarR family ... 40 0.070
ref|NP_359329.1| hypothetical protein spr1737 [Streptococcu... 39 0.074
ref|ZP_01821371.1| transcriptional regulator, MarR family p... 39 0.092
ref|ZP_01825898.1| transcriptional regulator, MarR family p... 39 0.10
ref|YP_001695279.1| transcriptional regulator, MarR family ... 39 0.11
ref|ZP_01818692.1| transcriptional regulator, MarR family p... 39 0.12
ref|ZP_01544908.1| transcriptional regulator, MarR family [... 39 0.14
ref|NP_346348.1| transcriptional regulator, MarR family [St... 38 0.21
ref|ZP_01831044.1| transcriptional regulator, MarR family p... 38 0.27
ref|ZP_01828446.1| transcriptional regulator, MarR family p... 37 0.28
ref|YP_811351.1| Transcriptional regulator [Oenococcus oeni... 37 0.43
pdb|3BRO|A Chain A, Crystal Structure Of The Transcription ... 35 1.2
ref|YP_910056.1| possible MarR-type transcriptional regulat... 35 1.5
ref|XP_001237560.2| AGAP010492-PA [Anopheles gambiae str. P... 35 2.3
ref|ZP_02029901.1| hypothetical protein BIFADO_02362 [Bifid... 34 3.7
ref|XP_001354120.1| GA20166-PA [Drosophila pseudoobscura] >... 33 4.5
gb|AAO45202.1| RE70136p [Drosophila melanogaster] 33 5.1
ref|NP_649324.1| SAK CG7186-PA [Drosophila melanogaster] >g... 33 5.1
ref|XP_394339.2| PREDICTED: similar to lin-9 homolog [Apis ... 33 6.0
ref|ZP_02092106.1| hypothetical protein FAEPRAM212_02395 [F... 33 8.4
ref|NP_578633.2| N-glycosylase/DNA lyase [Pyrococcus furios... 32 9.6
sp|Q8U2D5|AGOG_PYRFU N-glycosylase/DNA lyase (AGOG) (8-oxog... 32 9.6
>ref|NP_268589.1| hypothetical protein SPy_0227 [Streptococcus pyogenes M1 GAS]
gb|AAK33310.1| hypothetical protein SPy_0227 [Streptococcus pyogenes M1 GAS]
Length = 69
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLR 60
MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLR
Sbjct: 1 MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLR 60
Query: 61 IFQSQLLVI 69
IFQSQLLVI
Sbjct: 61 IFQSQLLVI 69
>ref|NP_606503.1| hypothetical protein spyM18_0213 [Streptococcus pyogenes
MGAS8232]
ref|NP_663966.1| hypothetical protein SpyM3_0162 [Streptococcus pyogenes MGAS315]
ref|NP_801431.1| hypothetical protein SPs0169 [Streptococcus pyogenes SSI-1]
ref|YP_059544.1| Transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS10394]
ref|ZP_00365805.1| COG1846: Transcriptional regulators [Streptococcus pyogenes M49
591]
ref|YP_279658.1| transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS6180]
ref|YP_281559.1| transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS5005]
ref|YP_595928.1| transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS9429]
ref|YP_597803.1| Transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS10270]
ref|YP_599803.1| Transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS2096]
ref|YP_601684.1| Transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS10750]
ref|YP_001127770.1| MarR family regulatory protein [Streptococcus pyogenes str.
Manfredo]
gb|AAL97002.1| hypothetical protein [Streptococcus pyogenes MGAS8232]
gb|AAM78769.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
dbj|BAC63264.1| hypothetical protein [Streptococcus pyogenes SSI-1]
gb|AAT86361.1| Transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS10394]
gb|AAX71303.1| transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS6180]
gb|AAZ50814.1| transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS5005]
gb|ABF31384.1| transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS9429]
gb|ABF33259.1| Transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS10270]
gb|ABF35259.1| Transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS2096]
gb|ABF37140.1| Transcriptional regulator, MarR family [Streptococcus pyogenes
MGAS10750]
emb|CAM29518.1| MarR family regulatory protein [Streptococcus pyogenes str.
Manfredo]
Length = 149
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/64 (96%), Positives = 63/64 (98%)
Query: 1 MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLR 60
MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLR
Sbjct: 1 MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLR 60
Query: 61 IFQS 64
I +S
Sbjct: 61 ISKS 64
>ref|ZP_00876238.1| regulatory protein, MarR [Streptococcus suis 89/1591]
gb|EAP39598.1| regulatory protein, MarR [Streptococcus suis 89/1591]
Length = 149
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 48/64 (75%)
Query: 1 MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLR 60
M I D R L++QIEQIS+ IAK+YDVEHLAGPQG+ L F+A+ E FVKDIE +LR
Sbjct: 1 MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEVETFVKDIEAELR 60
Query: 61 IFQS 64
I +S
Sbjct: 61 ISKS 64
>ref|YP_001199405.1| Transcriptional regulator [Streptococcus suis 05ZYH33]
ref|YP_001201597.1| Transcriptional regulator [Streptococcus suis 98HAH33]
gb|ABP91005.1| Transcriptional regulator [Streptococcus suis 05ZYH33]
gb|ABP93197.1| Transcriptional regulator [Streptococcus suis 98HAH33]
Length = 149
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 48/64 (75%)
Query: 1 MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLR 60
M I D R L++QIEQIS+ IAK+YDVEHLAGPQG+ L F+A+ E FVKDIE +L+
Sbjct: 1 MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELK 60
Query: 61 IFQS 64
I +S
Sbjct: 61 ISKS 64
>ref|YP_138961.1| transcriptional regulator, MarR family [Streptococcus
thermophilus LMG 18311]
ref|YP_140848.1| transcriptional regulator, MarR family [Streptococcus
thermophilus CNRZ1066]
ref|YP_819948.1| Transcriptional regulator [Streptococcus thermophilus LMD-9]
gb|AAV60146.1| transcriptional regulator, MarR family [Streptococcus
thermophilus LMG 18311]
gb|AAV62033.1| transcriptional regulator, MarR family [Streptococcus
thermophilus CNRZ1066]
gb|ABJ65752.1| transcriptional regulator, MarR family [Streptococcus
thermophilus LMD-9]
Length = 147
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 43/60 (71%)
Query: 5 IGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRIFQS 64
D RE I+ +E E+ K Y VEHLAGPQG+ + +L ++Q++EIF+KDIEK+L I +S
Sbjct: 7 FSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKS 66
>ref|NP_721321.1| putative transcriptional regulator [Streptococcus mutans UA159]
gb|AAN58627.1|AE014933_1 putative transcriptional regulator [Streptococcus mutans UA159]
Length = 144
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 1 MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLR 60
M + + + LI E+ E++K + VEHL+GPQG+ ++FL +Q +EIF+KDIEK+L
Sbjct: 1 MKEPFSEFKNLITATERYIQELSKSHGVEHLSGPQGWTVMFLKDNQGKEIFIKDIEKRLD 60
Query: 61 IFQS 64
I +S
Sbjct: 61 ISKS 64
>ref|NP_688330.1| transcriptional regulator, MarR family [Streptococcus agalactiae
2603V/R]
gb|AAN00203.1|AE014253_1 transcriptional regulator, MarR family [Streptococcus agalactiae
2603V/R]
Length = 146
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 46/64 (71%)
Query: 1 MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLR 60
M + R L++Q+E+ D AK+YDVEHLAGPQG+++++L KH ++++ +K +E+ L
Sbjct: 1 MENPLQKARILVNQLEKYLDHYAKEYDVEHLAGPQGHLVMYLYKHPDKDMSIKAVEEILH 60
Query: 61 IFQS 64
I +S
Sbjct: 61 ISKS 64
>ref|NP_735839.1| hypothetical protein gbs1402 [Streptococcus agalactiae NEM316]
ref|YP_329973.1| transcriptional regulator, MarR family [Streptococcus agalactiae
A909]
ref|ZP_00783356.1| transcriptional regulator, MarR family [Streptococcus agalactiae
H36B]
ref|ZP_00786193.1| transcriptional regulator, MarR family [Streptococcus agalactiae
COH1]
ref|ZP_00787494.1| transcriptional regulator, MarR family [Streptococcus agalactiae
CJB111]
ref|ZP_00790959.1| transcriptional regulator, MarR family [Streptococcus agalactiae
515]
emb|CAD47061.1| unknown [Streptococcus agalactiae NEM316]
gb|ABA45447.1| transcriptional regulator, MarR family [Streptococcus agalactiae
A909]
gb|EAO70303.1| transcriptional regulator, MarR family [Streptococcus agalactiae
515]
gb|EAO73719.1| transcriptional regulator, MarR family [Streptococcus agalactiae
CJB111]
gb|EAO75068.1| transcriptional regulator, MarR family [Streptococcus agalactiae
COH1]
gb|EAO77905.1| transcriptional regulator, MarR family [Streptococcus agalactiae
H36B]
Length = 146
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 45/64 (70%)
Query: 1 MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLR 60
M + R L++Q+E+ D AK+YDVEHLAGPQG++++ L KH ++++ +KD E+ L
Sbjct: 1 MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILH 60
Query: 61 IFQS 64
I +S
Sbjct: 61 ISKS 64
>ref|ZP_02919484.1| hypothetical protein STRINF_00326 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gb|EDT48402.1| hypothetical protein STRINF_00326 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length = 146
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 44/57 (77%)
Query: 8 LRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRIFQS 64
R I+ +E E+ +++ VE+LAGPQG+ +++L +++++E+F+KDIE++L+I +S
Sbjct: 10 FRYFINLMENRVHELGEQHGVENLAGPQGFAVLYLRENEDKEVFIKDIERKLKISKS 66
>ref|ZP_02868655.1| hypothetical protein CLOSPI_02498 [Clostridium spiroforme DSM
1552]
gb|EDS74072.1| hypothetical protein CLOSPI_02498 [Clostridium spiroforme DSM
1552]
Length = 143
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 3 QVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRIF 62
++ ++R L + I + +EI + L GPQ +L +L KHQN ++F KDIE + I
Sbjct: 5 KIGAEIRVLANLIGRNFNEINSGDECYDLTGPQSLILAYLYKHQNDDVFQKDIELEFNIR 64
Query: 63 QS 64
+S
Sbjct: 65 RS 66
>ref|ZP_02429703.1| hypothetical protein CLORAM_03126 [Clostridium ramosum DSM 1402]
gb|EDS17152.1| hypothetical protein CLORAM_03126 [Clostridium ramosum DSM 1402]
Length = 157
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 7 DLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRIFQS 64
++R L + I + +E+ + L GPQG VL +L HQ+++IF KDIE I +S
Sbjct: 23 EIRILANLICRCLNELGFNEEHNGLTGPQGLVLGYLYDHQDKDIFQKDIEATFNIRRS 80
>ref|ZP_01822773.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP9-BS68]
gb|EDK79199.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP9-BS68]
Length = 156
Score = 40.0 bits (92), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 13 HQIEQISDEIAKKYDVEHLAGPQGYVLVFL-AKHQNQE-IFVKDIEKQLRIFQS 64
HQI + + AK+ +E + GPQG V+ FL + +NQ+ + +KDIE++L I +S
Sbjct: 13 HQIHLMVQKEAKRCGIEFMGGPQGQVVRFLDNREKNQDLVLIKDIEQELNITKS 66
>ref|YP_001034458.1| Multiple antibiotic resistance operon transcription repressor
(MarR), putative [Streptococcus sanguinis SK36]
gb|ABN43908.1| Multiple antibiotic resistance operon transcription repressor
(MarR), putative [Streptococcus sanguinis SK36]
Length = 152
Score = 39.7 bits (91), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 1 MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVL--VFLAKHQNQEIFVKDIEKQ 58
M + + +L+ +I I++++AK+ +E +AGPQG VL V + ++ +KDIE++
Sbjct: 1 MDKPLLELKRFGRKIHLIAEKLAKEQGIESMAGPQGQVLHIVACRMEEGKDTLIKDIEQE 60
Query: 59 LRIFQS 64
L I +S
Sbjct: 61 LDISKS 66
>ref|YP_001836613.1| transcriptional regulator, MarR family [Streptococcus pneumoniae
CGSP14]
gb|ACB91148.1| transcriptional regulator, MarR family [Streptococcus pneumoniae
CGSP14]
Length = 114
Score = 39.7 bits (91), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 13 HQIEQISDEIAKKYDVEHLAGPQGYVLVFL-AKHQNQE-IFVKDIEKQLRIFQS 64
HQI + + AK+ +E + GPQG V+ FL + +NQ+ + +KDIE++L I +S
Sbjct: 13 HQIYLMVQKEAKRCGIEFMGGPQGQVVRFLDNREKNQDLVLIKDIEQELNITKS 66
>ref|NP_359329.1| hypothetical protein spr1737 [Streptococcus pneumoniae R6]
ref|ZP_01833522.1| hypothetical protein CGSSp19BS75_00981 [Streptococcus pneumoniae
SP19-BS75]
gb|AAL00540.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gb|EDK70483.1| hypothetical protein CGSSp19BS75_00981 [Streptococcus pneumoniae
SP19-BS75]
Length = 114
Score = 39.3 bits (90), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 13 HQIEQISDEIAKKYDVEHLAGPQGYVLVFL-AKHQNQE-IFVKDIEKQLRIFQS 64
HQI + + AK+ +E + GPQG V+ FL + +NQ+ + +KDIE++L I +S
Sbjct: 13 HQIYLMVQKEAKRCGIEFMGGPQGQVVRFLDNREKNQDLVLIKDIEQELNITKS 66
>ref|ZP_01821371.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP6-BS73]
ref|ZP_01835864.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP23-BS72]
gb|EDK75613.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP6-BS73]
gb|EDK80903.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP23-BS72]
Length = 156
Score = 39.3 bits (90), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 13 HQIEQISDEIAKKYDVEHLAGPQGYVLVFL-AKHQNQE-IFVKDIEKQLRIFQS 64
HQI + + AK+ +E + GPQG V+ FL + +NQ+ + +KDIE++L I +S
Sbjct: 13 HQIYLMVQKEAKRCGIEFMGGPQGQVVRFLDNREKNQDLVLIKDIEQELNITKS 66
>ref|ZP_01825898.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP11-BS70]
ref|ZP_02722537.1| transcriptional regulator, MarR family [Streptococcus pneumoniae
MLV-016]
gb|EDK62696.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP11-BS70]
gb|EDT98121.1| transcriptional regulator, MarR family [Streptococcus pneumoniae
MLV-016]
Length = 156
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 13 HQIEQISDEIAKKYDVEHLAGPQGYVLVFL-AKHQNQE-IFVKDIEKQLRIFQS 64
HQI + + AK+ +E + GPQG V+ FL + +NQ+ + +KDIE++L I +S
Sbjct: 13 HQIHLMVQKEAKRCGIEFMGGPQGQVVHFLDNREKNQDLVLIKDIEQELNITKS 66
>ref|YP_001695279.1| transcriptional regulator, MarR family [Streptococcus pneumoniae
Hungary19A-6]
gb|ACA35828.1| transcriptional regulator, MarR family [Streptococcus pneumoniae
Hungary19A-6]
Length = 156
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 13 HQIEQISDEIAKKYDVEHLAGPQGYVLVFL-AKHQNQE-IFVKDIEKQLRIFQS 64
HQI + + AK+ +E + GPQG V+ FL + +NQ+ + +KDIE++L I +S
Sbjct: 13 HQIHLMVQKEAKRCGIEFMGGPQGQVVHFLDNREKNQDLVLIKDIEQELNITKS 66
>ref|ZP_01818692.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP3-BS71]
gb|EDK73344.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP3-BS71]
Length = 149
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 13 HQIEQISDEIAKKYDVEHLAGPQGYVLVFL-AKHQNQE-IFVKDIEKQLRIFQS 64
HQI + + AK+ +E + GPQG V+ FL + +NQ+ + +KDIE++L I +S
Sbjct: 13 HQIHLMVQKEAKRCGIEFMGGPQGQVVHFLDNREKNQDLVLIKDIEQELNITKS 66
>ref|ZP_01544908.1| transcriptional regulator, MarR family [Oenococcus oeni ATCC
BAA-1163]
gb|EAV38874.1| transcriptional regulator, MarR family [Oenococcus oeni ATCC
BAA-1163]
Length = 136
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 1 MSQVIGDLRELI-HQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQL 59
MS+ +G L ++ +Q+ D AKKYD L G Q ++ +L++++N+EI KD+E +
Sbjct: 1 MSRDLGRLLKIASNQMSTRFDIFAKKYD---LTGTQMTIIDYLSRNKNKEILQKDLESEF 57
Query: 60 RIFQSQLLVI 69
I S V+
Sbjct: 58 NIKSSTATVL 67
>ref|NP_346348.1| transcriptional regulator, MarR family [Streptococcus pneumoniae
TIGR4]
ref|ZP_01408104.1| hypothetical protein SpneT_02001448 [Streptococcus pneumoniae
TIGR4]
gb|AAK75988.1| transcriptional regulator, MarR family [Streptococcus pneumoniae
TIGR4]
Length = 149
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 13 HQIEQISDEIAKKYDVEHLAGPQGYVLVFL-AKHQNQE-IFVKDIEKQLRI 61
HQI + + AK+ +E + GPQG V+ FL + +NQ+ + +KDIE++L I
Sbjct: 13 HQIHLMVQKEAKRCGIEFMGGPQGQVVRFLDNREKNQDLVLIKDIEQELNI 63
>ref|ZP_01831044.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP18-BS74]
gb|EDK67942.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP18-BS74]
Length = 149
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 13 HQIEQISDEIAKKYDVEHLAGPQGYVLVFL-AKHQNQE-IFVKDIEKQLRIFQS 64
HQI + + AK+ +E + GPQG V+ FL + +NQ+ + +KDI+++L I +S
Sbjct: 13 HQIHLMVQKEAKRCGIEFMGGPQGQVVHFLDNREKNQDLVLIKDIDQELNITKS 66
>ref|ZP_01828446.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP14-BS69]
ref|ZP_02716247.1| transcriptional regulator, MarR family [Streptococcus pneumoniae
CDC0288-04]
gb|EDK65313.1| transcriptional regulator, MarR family protein [Streptococcus
pneumoniae SP14-BS69]
gb|EDT94253.1| transcriptional regulator, MarR family [Streptococcus pneumoniae
CDC0288-04]
Length = 149
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 13 HQIEQISDEIAKKYDVEHLAGPQGYVLVFL-AKHQNQE-IFVKDIEKQLRIFQS 64
HQI + + AK+ +E + GPQG V+ FL + +NQ+ + +KDI+++L I +S
Sbjct: 13 HQIHLMVQKEAKRCGIEFMGGPQGQVVHFLDNREKNQDLVLIKDIDQELNITKS 66
>ref|YP_811351.1| Transcriptional regulator [Oenococcus oeni PSU-1]
gb|ABJ57686.1| Transcriptional regulator [Oenococcus oeni PSU-1]
Length = 138
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 1 MSQVIGDLRELI-HQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQL 59
MS+ +G L ++ +Q+ D AKKYD L G Q ++ +L++++N+E+ +D+E +
Sbjct: 1 MSRDLGRLLKIASNQMSTRFDIFAKKYD---LTGTQMTIIDYLSRNKNKEVLQRDLESEF 57
Query: 60 RIFQSQLLVI 69
I S V+
Sbjct: 58 SIKSSTATVL 67
>pdb|3BRO|A Chain A, Crystal Structure Of The Transcription Regulator Marr
From Oenococcus Oeni Psu-1
pdb|3BRO|B Chain B, Crystal Structure Of The Transcription Regulator Marr
From Oenococcus Oeni Psu-1
pdb|3BRO|C Chain C, Crystal Structure Of The Transcription Regulator Marr
From Oenococcus Oeni Psu-1
pdb|3BRO|D Chain D, Crystal Structure Of The Transcription Regulator Marr
From Oenococcus Oeni Psu-1
Length = 141
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 20 DEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRIFQSQLLVI 69
D AKKYD L G Q ++ +L++++N+E+ +D+E + I S V+
Sbjct: 24 DIFAKKYD---LTGTQXTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVL 70
>ref|YP_910056.1| possible MarR-type transcriptional regulator [Bifidobacterium
adolescentis ATCC 15703]
dbj|BAF39974.1| possible MarR-type transcriptional regulator [Bifidobacterium
adolescentis ATCC 15703]
Length = 228
Score = 35.0 bits (79), Expect = 1.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 22 IAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRIFQS 64
+ + +VE L+G ++ FLA+H +EIF +D+E++ I +S
Sbjct: 61 VTRPMEVESLSGGNIDIITFLARHSEREIFPQDVERRFGITRS 103
>ref|XP_001237560.2| AGAP010492-PA [Anopheles gambiae str. PEST]
gb|EAU76749.2| AGAP010492-PA [Anopheles gambiae str. PEST]
Length = 575
Score = 34.7 bits (78), Expect = 2.3, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 7 DLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKD 54
D R L+H IE+ +DE A + + L GP + +VFL K +N+ F +D
Sbjct: 88 DTRWLLHSIERCADENAVFHLLVSLRGP--FSVVFLRKRENRIYFARD 133
>ref|ZP_02029901.1| hypothetical protein BIFADO_02362 [Bifidobacterium adolescentis
L2-32]
gb|EDN82234.1| hypothetical protein BIFADO_02362 [Bifidobacterium adolescentis
L2-32]
Length = 228
Score = 33.9 bits (76), Expect = 3.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 22 IAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRIFQS 64
+ + +V+ L+G ++ FLA+H +EIF +D+E++ I +S
Sbjct: 61 VTRPMEVDSLSGGNIDIITFLARHSEREIFPQDVERRFGITRS 103
>ref|XP_001354120.1| GA20166-PA [Drosophila pseudoobscura]
gb|EAL29859.1| GA20166-PA [Drosophila pseudoobscura]
Length = 777
Score = 33.5 bits (75), Expect = 4.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 21 EIAKKYDVEHLAGPQGYVLVFLAK--HQNQEIFVKDIEKQL 59
E ++Y+V+HL G G+ V+ A+ H +Q++ +K I+K+L
Sbjct: 9 ETIEEYEVQHLLGKGGFASVYKARCLHSHQDVAIKMIDKKL 49
>gb|AAO45202.1| RE70136p [Drosophila melanogaster]
Length = 769
Score = 33.5 bits (75), Expect = 5.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 21 EIAKKYDVEHLAGPQGYVLVFLAK--HQNQEIFVKDIEKQL 59
E + Y+V+HL G G+ V+ A+ H +Q++ +K I+K+L
Sbjct: 9 ETIEDYEVQHLLGKGGFATVYKARCLHTHQDVAIKMIDKKL 49
>ref|NP_649324.1| SAK CG7186-PA [Drosophila melanogaster]
gb|AAD19607.1| serine/threonine kinase [Drosophila melanogaster]
gb|AAF51737.1| CG7186-PA [Drosophila melanogaster]
Length = 769
Score = 33.5 bits (75), Expect = 5.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 21 EIAKKYDVEHLAGPQGYVLVFLAK--HQNQEIFVKDIEKQL 59
E + Y+V+HL G G+ V+ A+ H +Q++ +K I+K+L
Sbjct: 9 ETIEDYEVQHLLGKGGFATVYKARCLHTHQDVAIKMIDKKL 49
>ref|XP_394339.2| PREDICTED: similar to lin-9 homolog [Apis mellifera]
Length = 623
Score = 33.1 bits (74), Expect = 6.0, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 1 MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLR 60
MSQ++ DL L+ Q++ +SD Y+++ L G + L+ QNQ++F +E ++
Sbjct: 545 MSQLVTDLTALMLQVKSLSDSDRNAYELKVLQGTMEQIRAKLSP-QNQQVFQNCVEIHMQ 603
Query: 61 IFQ 63
Q
Sbjct: 604 HIQ 606
>ref|ZP_02092106.1| hypothetical protein FAEPRAM212_02395 [Faecalibacterium prausnitzii
M21/2]
gb|EDP21067.1| hypothetical protein FAEPRAM212_02395 [Faecalibacterium prausnitzii
M21/2]
Length = 178
Score = 32.7 bits (73), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 30/50 (60%)
Query: 20 DEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRIFQSQLLVI 69
++ ++ VE G+++ +L +H+++ +F +DIE++ I +S + I
Sbjct: 57 NQFSRANGVEQTTPMHGWIIEYLYRHRDEPVFQRDIEREFSITRSTVTNI 106
>ref|NP_578633.2| N-glycosylase/DNA lyase [Pyrococcus furiosus DSM 3638]
Length = 245
Score = 32.3 bits (72), Expect = 9.6, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 8 LRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVK 53
+REL+ I+ I E AK +VE Q Y L +L +HQ+ E+F+K
Sbjct: 4 MRELVEIIKGIGIEGAK--EVEEKVDRQFYALQYLFRHQDPEMFIK 47
>sp|Q8U2D5|AGOG_PYRFU N-glycosylase/DNA lyase (AGOG) (8-oxoguanine DNA glycosylase)
(DNA-(apurinic or apyrimidinic site) lyase) (AP lyase)
gb|AAL81028.1| hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 242
Score = 32.3 bits (72), Expect = 9.6, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 8 LRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVK 53
+REL+ I+ I E AK +VE Q Y L +L +HQ+ E+F+K
Sbjct: 1 MRELVEIIKGIGIEGAK--EVEEKVDRQFYALQYLFRHQDPEMFIK 44
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 10, 2008 4:54 AM
Number of letters in database: 2,222,278,849
Number of sequences in database: 6,515,104
Lambda K H
0.323 0.141 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 6515104
Number of Hits to DB: 264,684,270
Number of extensions: 8074133
Number of successful extensions: 27762
Number of sequences better than 10.0: 36
Number of HSP's gapped: 27982
Number of HSP's successfully gapped: 36
Length of query: 69
Length of database: 2,222,278,849
Length adjustment: 41
Effective length of query: 28
Effective length of database: 1,955,159,585
Effective search space: 54744468380
Effective search space used: 54744468380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 73 (32.7 bits)