WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract
RepeatMasker repeats found in sequence:No Repeats Found.Reference: Gish, Warren (1994-1997). unpublished. Gish, Warren and David J. States (1993). Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-72.Notice: statistical significance is estimated under the assumption that the equivalent of one entire reading frame in the query sequence codes for protein and that significant alignments will involve only coding reading frames.
Query= SSH7G12.SEQ(1>571) (539 letters)
Translating both strands of query sequence in all 6 reading framesDatabase: nr 505,245 sequences; 158,518,215 total letters.Observed Numbers of Database Sequences Satisfying Various EXPECTation Thresholds (E parameter values) Histogram units: = 3 Sequences : less than 3 sequences EXPECTation Threshold (E parameter) | V Observed Counts--> 10000 2078 178 |=========================================================== 6310 1900 134 |============================================ 3980 1766 114 |====================================== 2510 1652 120 |======================================== 1580 1532 111 |===================================== 1000 1421 39 |============= 631 1382 36 |============ 398 1346 26 |======== 251 1320 27 |========= 158 1293 25 |======== 100 1268 13 |==== 63.1 1255 10 |=== 39.8 1245 7 |== 25.1 1238 6 |== 15.8 1232 2 |: >>>>>>>>>>>>>>>>>>>>> Expect = 10.0, Observed = 1230 <<<<<<<<<<<<<<<<< 10.0 1230 8 |== 6.31 1222 9 |=== 3.98 1213 5 |= 2.51 1208 7 |== 1.58 1201 14 |==== 1.00 1187 13 |==== 0.63 1174 4 |= 0.40 1170 10 |=== 0.25 1160 8 |== 0.16 1152 9 |=== 0.10 1143 7 |== 0.063 1136 6 |== 0.040 1130 8 |== 0.025 1122 13 |==== 0.016 1109 14 |==== 0.010 1095 26 |======== 0.0063 1069 13 |==== 0.0040 1056 11 |=== 0.0025 1045 16 |===== 0.0016 1029 4 |= Smallest Sum Reading High Probability Sequences producing High-scoring Segment Pairs: Frame Score P(N) N gi|7438394|pir||T14405small GTP-binding protein rab-1... +1 608 3.4e-70 2 gi|479442|pir||S33900GTP-binding protein ypt2 - tomat... +1 654 3.0e-63 1 gi|1370196|emb|CAA98175.1|(Z73947) RAB8D [Lotus japon... +1 653 3.9e-63 1 gi|1362065|pir||S57462GTP-binding protein GTP11 - gar... +1 646 2.1e-62 1 gi|1362067|pir||S57478GTP-binding protein GTP13 - gar... +1 646 2.1e-62 1 gi|1370190|emb|CAA98172.1|(Z73944) RAB8A [Lotus japon... +1 646 2.1e-62 1 gi|114088|sp|P28186|ARA3_ARATHRAS-RELATED PROTEIN ARA... +1 641 7.2e-62 1 gi|1362064|pir||S57474GTP-binding protein - garden pe... +1 639 1.2e-61 1 gi|1370198|emb|CAA98176.1|(Z73948) RAB8E [Lotus japon... +1 635 3.1e-61 1 gi|1370192|emb|CAA98173.1|(Z73945) RAB8B [Lotus japon... +1 633 5.1e-61 1 gi|5669640|gb|AAD46405.1|AF096249_1(AF096249) ethylen... +1 630 1.1e-60 1 gi|1362066|pir||S57471GTP-binding protein GTP6 - gard... +1 628 1.7e-60 1 gi|2808638|emb|CAA04701.1|(AJ001367) small GTP-bindin... +1 628 1.7e-60 1 gi|2289961|gb|AAB65088.1|(U82434) AtRAB8 [Arabidopsis... +1 627 2.2e-60 1 gi|3024527|sp|Q39433|RAB1_BETVURAS-RELATED PROTEIN RA... +1 623 5.8e-60 1 gi|7378637|emb|CAB83313.1|(AL162751) GTP-binding prot... +1 608 2.3e-58 1 gi|6681329|gb|AAF23246.1|AC015985_4(AC015985) putativ... +1 602 9.8e-58 1 gi|1370194|emb|CAA98174.1|(Z73946) RAB8C [Lotus japon... +1 601 1.2e-57 1 gi|134228|sp|P20790|SAS1_DICDIGTP-BINDING PROTEIN SAS... +1 524 1.5e-53 2 gi|134236|sp|P20791|SAS2_DICDIGTP-BINDING PROTEIN SAS... +1 520 6.4e-53 2 gi|4885483ref|NP_005361.1| mel transforming oncogene;... +1 481 1.3e-48 2 gi|1710002|sp|P55258|RAB8_MOUSERAS-RELATED PROTEIN RA... +1 481 2.1e-48 2 gi|549809|sp|P36861|YPT2_VOLCAGTP-BINDING PROTEIN YPT... +1 513 2.6e-48 1 gi|141305|sp|P17609|YPT2_SCHPOYPT1-RELATED PROTEIN 2 ... +1 485 3.5e-48 2 gi|131798|sp|P24407|RAB8_HUMANRAS-RELATED PROTEIN RAB... +1 481 3.5e-48 2 gi|2500066|sp|P70550|RB8B_RATRAS-RELATED PROTEIN RAB-... +1 480 8.3e-45 1 gi|131848|sp|P22128|RAB8_DISOMRAS-RELATED PROTEIN RAB... +1 477 1.7e-44 1 gi|7498104|pir||T33855hypothetical protein D1037.4 - ... +1 476 2.2e-44 1 gi|7706563ref|NP_057614.1| RAB-8b protein >gi|7209512... +1 476 2.2e-44 1 gi|103724|pir||B38625GTP-binding protein ora2 - elect... +1 468 1.5e-43 1 gi|2313045|dbj|BAA21711.1|(D84347) rab8 [Drosophila m... +1 463 5.2e-43 1 gi|1173333|sp|P41924|RYL1_YARLIRAS-LIKE GTP-BINDING P... +1 461 8.5e-43 1 gi|2133238|pir||S51495GTP-binding protein RYL1 - yeas... +1 460 1.1e-42 1 gi|131804|sp|P24409|RB10_CANFARAS-RELATED PROTEIN RAB... +1 458 1.8e-42 1 gi|420269|pir||B42148GTP-binding protein rab10 - rat +1 458 1.8e-42 1 gi|7705849ref|NP_057215.1| ras-related GTP-binding pr... +1 458 1.8e-42 1 gi|541978|pir||S41430GTP-binding protein, ras-like (c... +1 448 2.0e-41 1 gi|730510|sp|P40392|RIC1_ORYSARAS-RELATED PROTEIN RIC... +1 445 4.2e-41 1 gi|81634|pir||PS0279GTP-binding protein ara-5 - Arabi... +1 443 6.9e-41 1 gi|217841|dbj|BAA00832.1|(D01027) small GTP-binding p... +1 443 6.9e-41 1 gi|5902803|sp|P28188|ARA5_ARATHRAS-RELATED PROTEIN AR... +1 443 6.9e-41 1 gi|464553|sp|P35281|RB10_RATRAS-RELATED PROTEIN RAB-1... +1 441 1.1e-40 1 gi|131847|sp|P22127|RAO1_DISOMRAS-RELATED PROTEIN ORA... +1 440 1.4e-40 1 gi|1546067|gb|AAB08102.1|(U68069) GTPase SUrab10p [St... +1 438 2.3e-40 1 gi|4506363ref|NP_002861.1| RAB13, member RAS oncogene... +1 437 3.0e-40 1 gi|2317272|dbj|BAA21744.1|(AB006189) Rab10 [Drosophil... +1 435 4.9e-40 1 gi|7438392|pir||T14391GTP-binding protein homolog - t... +1 434 6.2e-40 1 gi|7497231|pir||T33781hypothetical protein C39F7.4 - ... +1 434 6.2e-40 1 gi|466170|sp|P16976|YPT1_MAIZEGTP-BINDING PROTEIN YPT... +1 433 7.9e-40 1 gi|7438373|pir||S72515GTP-binding protein RAB1 - gard... +1 433 7.9e-40 1 Locally-aligned regions (HSPs) with respect to query sequence: Locus_ID Frame 2 Hits gi|7438394 | ___________ gi|479442 | __________ gi|1362065 | _________ gi|1362067 | _________ gi|114088 | __________ gi|1362064 | _________ gi|1370198 | ________ gi|1362066 | __________ gi|2808638 | __________ gi|2289961 | __________ gi|3024527 | ________ gi|7378637 | _________ gi|6681329 | __________ gi|1370194 | __________ gi|134228 | ________ gi|134236 | __________ gi|4885483 | __________ gi|1710002 | __________ gi|141305 | ______ gi|131798 | __________ __________________________________________________ Query sequence: | | | | | 180 0 50 100 150 Locus_ID Frame 1 Hits gi|7438394 |__________________________________ gi|479442 |______________________________________________ gi|1370196 |______________________________________________ gi|1362065 |______________________________________________ gi|1362067 |______________________________________________ gi|1370190 |______________________________________________ gi|114088 |______________________________________________ gi|1362064 |______________________________________________ gi|1370198 |______________________________________________ gi|1370192 |______________________________________________ gi|5669640 |______________________________________________ gi|1362066 |______________________________________________ gi|2808638 |______________________________________________ gi|2289961 |______________________________________________ gi|3024527 |______________________________________________ gi|7378637 |______________________________________________ gi|6681329 |______________________________________________ gi|1370194 |______________________________________________ gi|134228 |_____________________________________ gi|134236 |_____________________________________ gi|4885483 |_____________________________________ gi|1710002 |_____________________________________ gi|549809 |____________________________________________ gi|141305 |____________________________________ gi|131798 |_____________________________________ gi|2500066 |______________________________________________ gi|131848 |_____________________________________ gi|7498104 |_____________________________________ gi|7706563 |_____________________________________ gi|103724 |_____________________________________ gi|2313045 |_____________________________________ gi|1173333 |__________________________________ gi|2133238 |__________________________________ gi|131804 |______________________________________________ gi|420269 |______________________________________________ gi|7705849 |______________________________________________ gi|541978 |______________________________________________ gi|730510 |______________________________________________ gi|81634 |_____________________________________ gi|217841 |_____________________________________ gi|5902803 |_____________________________________ gi|464553 |______________________________________________ gi|131847 |__________________________________ gi|1546067 |__________________________________ gi|4506363 |_________________________________________ gi|2317272 |__________________________________ gi|7438392 |______________________________________________ gi|7497231 |_____________________________________ gi|466170 |_____________________________________ gi|7438373 |_____________________________________ __________________________________________________ Query sequence: | | | | | 180 0 50 100 150
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WARNING: Descriptions of 1180 database sequences were not reported due to the limiting value of parameter V = 50.>gi|7438394|pir||T14405 small GTP-binding protein rab-1 - turnip >gi|1654144|gb|AAB17726.1| (U38471) small GTP-binding protein rab [Brassica rapa] Length = 222 Frame 2 hits (HSPs): _________ Frame 1 hits (HSPs): ____________________________ __________________________________________________ Database sequence: | | | | | | 222 0 50 100 150 200 Plus Strand HSPs: Score = 608 (214.0 bits), Expect = 3.4e-70, Sum P(2) = 3.4e-70 Identities = 118/121 (97%), Positives = 120/121 (99%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEE Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEV 169 Query: 364 F 366 F Sbjct: 170 F 170 Score = 130 (45.8 bits), Expect = 3.4e-70, Sum P(2) = 3.4e-70 Identities = 26/37 (70%), Positives = 34/37 (91%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQEKLD 469 +VFFSI RDIKQRL+DTD++AEP+TI+I++T QE LD Sbjct: 168 EVFFSIGRDIKQRLSDTDSRAEPATIRISQTDQE-LD 203
>gi|479442|pir||S33900 GTP-binding protein ypt2 - tomato >gi|313029|emb|CAA49600.1| (X69980) GTP-binding protein [Lycopersicon esculentum] Length = 216 Frame 2 hits (HSPs): _________ Frame 1 hits (HSPs): _______________________________________ Annotated Domains: ____ __________________________________________________ Database sequence: | | | | | | 216 0 50 100 150 200 __________________ Annotated Domains: PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31 __________________ Plus Strand HSPs: Score = 654 (230.2 bits), Expect = 3.0e-63, P = 3.0e-63 Identities = 133/164 (81%), Positives = 140/164 (85%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQ-NHQDQSGKAGQAAQKSAC 492 F K K + + + + N DQ+G AGQ AQKS+C Sbjct: 170 FFSIGKDIKQRLSESDSKTEPQSIRINQSDQAGTAGQGAQKSSC 213 Score = 102 (35.9 bits), Expect = 0.0085, P = 0.0084 Identities = 18/33 (54%), Positives = 28/33 (84%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQ 457 +VFFSI +DIKQRL+++D+K EP +I+I ++ Q Sbjct: 168 EVFFSIGKDIKQRLSESDSKTEPQSIRINQSDQ 200
>gi|1370196|emb|CAA98175.1| (Z73947) RAB8D [Lotus japonicus] Length = 214 Frame 1 hits (HSPs): _______________________________________ __________________________________________________ Database sequence: | | | | | | 214 0 50 100 150 200 Plus Strand HSPs: Score = 653 (229.9 bits), Expect = 3.9e-63, P = 3.9e-63 Identities = 129/163 (79%), Positives = 140/163 (85%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKR+KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW Sbjct: 50 IDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 +RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE Sbjct: 110 LRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492 F ++ K + H+ + +QD + AG+AA KS+C Sbjct: 170 FFSIARDIKQRLADTDHKAEPTTLKINQDSAAGAGEAANKSSC 212
>gi|1362065|pir||S57462 GTP-binding protein GTP11 - garden pea >gi|871506|emb|CAA90081.1| (Z49901) small GTP-binding protein [Pisum sativum] Length = 215 Frame 2 hits (HSPs): ________ Frame 1 hits (HSPs): _______________________________________ Annotated Domains: ____ __________________________________________________ Database sequence: | | | | | | 215 0 50 100 150 200 __________________ Annotated Domains: PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31 __________________ Plus Strand HSPs: Score = 646 (227.4 bits), Expect = 2.1e-62, P = 2.1e-62 Identities = 133/164 (81%), Positives = 140/164 (85%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVEE Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEV 169 Query: 364 FLLNSKRYKTKAG*H*HQG--RTINNQNHQDQSGKAGQAAQKSAC 492 F ++ K + + +TI N QD + GQAA KSAC Sbjct: 170 FFSIARDIKQRLADTDSKSEPQTIKI-NQQDPAANGGQAATKSAC 213 Score = 122 (42.9 bits), Expect = 1.3e-05, P = 1.3e-05 Identities = 24/30 (80%), Positives = 28/30 (93%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITK 448 +VFFSIARDIKQRLADTD+K+EP TIKI + Sbjct: 168 EVFFSIARDIKQRLADTDSKSEPQTIKINQ 197
>gi|1362067|pir||S57478 GTP-binding protein GTP13 - garden pea >gi|871508|emb|CAA90082.1| (Z49902) small GTP-binding protein [Pisum sativum] Length = 215 Frame 2 hits (HSPs): ________ Frame 1 hits (HSPs): _______________________________________ Annotated Domains: ____ __________________________________________________ Database sequence: | | | | | | 215 0 50 100 150 200 __________________ Annotated Domains: PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31 __________________ Plus Strand HSPs: Score = 646 (227.4 bits), Expect = 2.1e-62, P = 2.1e-62 Identities = 133/164 (81%), Positives = 140/164 (85%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVEE Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEV 169 Query: 364 FLLNSKRYKTKAG*H*HQG--RTINNQNHQDQSGKAGQAAQKSAC 492 F ++ K + + +TI N QD + GQAA KSAC Sbjct: 170 FFSIARDIKQRLADTDSRSEPQTIKI-NQQDPAANGGQAATKSAC 213 Score = 119 (41.9 bits), Expect = 3.8e-05, P = 3.8e-05 Identities = 23/30 (76%), Positives = 28/30 (93%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITK 448 +VFFSIARDIKQRLADTD+++EP TIKI + Sbjct: 168 EVFFSIARDIKQRLADTDSRSEPQTIKINQ 197
>gi|1370190|emb|CAA98172.1| (Z73944) RAB8A [Lotus japonicus] Length = 216 Frame 1 hits (HSPs): _______________________________________ __________________________________________________ Database sequence: | | | | | | 216 0 50 100 150 200 Plus Strand HSPs: Score = 646 (227.4 bits), Expect = 2.1e-62, P = 2.1e-62 Identities = 132/164 (80%), Positives = 137/164 (83%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNI+NW Sbjct: 51 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIKNW 110 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE Sbjct: 111 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 170 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQ-NHQDQSGKAGQAAQKSAC 492 F ++ K + + Q N D S GQAAQKS C Sbjct: 171 FFSIARDIKQRLADTDSRAEPQTIQINQPDASASGGQAAQKSCC 214
>gi|114088|sp|P28186|ARA3_ARATH RAS-RELATED PROTEIN ARA-3 >gi|320560|pir||JS0640 GTP-binding protein ara-3 - Arabidopsis thaliana >gi|217837|dbj|BAA00830.1| (D01025) small GTP-binding protein [Arabidopsis thaliana] >gi|7798994|emb|CAB90933.1| (AL355775) GTP-binding protein ara-3 [Arabidopsis thaliana] Length = 216 Frame 2 hits (HSPs): _________ Frame 1 hits (HSPs): _______________________________________ Annotated Domains: ________________________________________________ __________________________________________________ Database sequence: | | | | | | 216 0 50 100 150 200 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 12..158 Entrez np-binding site: GTP (BY SIMILARITY). 22..29 Entrez np-binding site: GTP (BY SIMILARITY). 70..74 Entrez np-binding site: GTP (BY SIMILARITY). 128..131 Entrez lipid-binding site: GERANYL-GERANYL (BY 213 Entrez lipid-binding site: GERANYL-GERANYL (BY 214 PFAM ras: Ras family 17..216 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 16..37 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 39..55 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 57..79 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 119..132 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 155..177 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 14..179 PRODOM PD005513: 181..214 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31 __________________ Plus Strand HSPs: Score = 641 (225.6 bits), Expect = 7.2e-62, P = 7.2e-62 Identities = 131/164 (79%), Positives = 138/164 (84%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEE Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEV 169 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQ-DQSGKAGQAAQKSAC 492 F + K + + + Q DQ+ AGQA QKSAC Sbjct: 170 FFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGAGQATQKSAC 213 Score = 127 (44.7 bits), Expect = 1.4e-06, P = 1.4e-06 Identities = 24/33 (72%), Positives = 31/33 (93%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQ 457 +VFFSI RDIKQRL+DTD++AEP+TIKI++T Q Sbjct: 168 EVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQ 200
>gi|1362064|pir||S57474 GTP-binding protein - garden pea >gi|871514|emb|CAA90079.1| (Z49899) small G protein [Pisum sativum] Length = 215 Frame 2 hits (HSPs): ________ Frame 1 hits (HSPs): _______________________________________ Annotated Domains: ___ __________________________________________________ Database sequence: | | | | | | 215 0 50 100 150 200 __________________ Annotated Domains: PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29 __________________ Plus Strand HSPs: Score = 639 (224.9 bits), Expect = 1.2e-61, P = 1.2e-61 Identities = 132/164 (80%), Positives = 139/164 (84%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGK IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW Sbjct: 50 IDFKIRTIELDGKPIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVEE Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEV 169 Query: 364 FLLNSKRYKTKAG*H*HQG--RTINNQNHQDQSGKAGQAAQKSAC 492 F ++ K + + +TI N QD + GQAA KSAC Sbjct: 170 FFSIARDIKQRLADTDSRSEPQTIKI-NQQDPAANGGQAATKSAC 213 Score = 119 (41.9 bits), Expect = 3.8e-05, P = 3.8e-05 Identities = 23/30 (76%), Positives = 28/30 (93%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITK 448 +VFFSIARDIKQRLADTD+++EP TIKI + Sbjct: 168 EVFFSIARDIKQRLADTDSRSEPQTIKINQ 197
>gi|1370198|emb|CAA98176.1| (Z73948) RAB8E [Lotus japonicus] Length = 215 Frame 2 hits (HSPs): ________ Frame 1 hits (HSPs): _______________________________________ __________________________________________________ Database sequence: | | | | | | 215 0 50 100 150 200 Plus Strand HSPs: Score = 635 (223.5 bits), Expect = 3.1e-61, P = 3.1e-61 Identities = 132/164 (80%), Positives = 140/164 (85%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNI+NW Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 I NIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE Sbjct: 110 IHNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQ---NHQDQSGKAGQAAQKSAC 492 F ++ K + +T N QD+ G AG+AAQKSAC Sbjct: 170 FFSIARDIKQRLA-DTDSSKTEPTGIKINPQDK-GSAGEAAQKSAC 213 Score = 105 (37.0 bits), Expect = 0.0034, P = 0.0034 Identities = 23/29 (79%), Positives = 26/29 (89%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDT-KAEPSTIKI 442 +VFFSIARDIKQRLADTD+ K EP+ IKI Sbjct: 168 EVFFSIARDIKQRLADTDSSKTEPTGIKI 196
>gi|1370192|emb|CAA98173.1| (Z73945) RAB8B [Lotus japonicus] Length = 187 Frame 1 hits (HSPs): ____________________________________________ __________________________________________________ Database sequence: | | | | | 187 0 50 100 150 Plus Strand HSPs: Score = 633 (222.8 bits), Expect = 5.1e-61, P = 5.1e-61 Identities = 128/164 (78%), Positives = 138/164 (84%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNI+NW Sbjct: 21 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNW 80 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV+E Sbjct: 81 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEV 140 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQ-NHQDQSGKAGQAAQKSAC 492 F ++ K + + + + N DQ + QAA KSAC Sbjct: 141 FFSIARDIKQRVADNDSKAEPQTLKINQPDQGAGSAQAAPKSAC 184
>gi|5669640|gb|AAD46405.1|AF096249_1 (AF096249) ethylene-responsive small GTP-binding protein [Lycopersicon esculentum] Length = 216 Frame 1 hits (HSPs): _______________________________________ __________________________________________________ Database sequence: | | | | | | 216 0 50 100 150 200 Plus Strand HSPs: Score = 630 (221.8 bits), Expect = 1.1e-60, P = 1.1e-60 Identities = 127/164 (77%), Positives = 139/164 (84%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE+ Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEQV 169 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAG-QAAQKSAC 492 F ++ K + + + +Q ++G G Q +QKSAC Sbjct: 170 FFSIARDIKQRLADTDSKAEPSTLKINQPEAGAGGSQTSQKSAC 213
>gi|1362066|pir||S57471 GTP-binding protein GTP6 - garden pea >gi|871510|emb|CAA90080.1| (Z49900) small GTP-binding protein [Pisum sativum] Length = 216 Frame 2 hits (HSPs): _________ Frame 1 hits (HSPs): _______________________________________ Annotated Domains: ____ __________________________________________________ Database sequence: | | | | | | 216 0 50 100 150 200 __________________ Annotated Domains: PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31 __________________ Plus Strand HSPs: Score = 628 (221.1 bits), Expect = 1.7e-60, P = 1.7e-60 Identities = 128/164 (78%), Positives = 139/164 (84%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNI+NW Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NV+E Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEV 169 Query: 364 FLLNSKRYKTKAG*H*H--QGRTINNQNHQDQSGKAGQAAQKSAC 492 F ++ K + + +T+ N DQ + QA QKSAC Sbjct: 170 FFSIARDIKQRLAETDSKTEPQTLKI-NQPDQGAGSAQATQKSAC 213 Score = 119 (41.9 bits), Expect = 3.9e-05, P = 3.9e-05 Identities = 23/33 (69%), Positives = 28/33 (84%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQ 457 +VFFSIARDIKQRLA+TD+K EP T+KI + Q Sbjct: 168 EVFFSIARDIKQRLAETDSKTEPQTLKINQPDQ 200
>gi|2808638|emb|CAA04701.1| (AJ001367) small GTP-binding protein [Daucus carota] Length = 216 Frame 2 hits (HSPs): _________ Frame 1 hits (HSPs): _______________________________________ __________________________________________________ Database sequence: | | | | | | 216 0 50 100 150 200 Plus Strand HSPs: Score = 628 (221.1 bits), Expect = 1.7e-60, P = 1.7e-60 Identities = 129/164 (78%), Positives = 138/164 (84%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIE+DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW Sbjct: 50 IDFKIRTIEMDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFE SAKTN+NVEE Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFEASAKTNMNVEEV 169 Query: 364 FLLNSKRYKTKAG*H*H--QGRTINNQNHQDQSGKAGQAAQKSAC 492 F +K K + + +TI N Q+Q A+QKSAC Sbjct: 170 FFSIAKDIKQRLAETDSKTEPQTIKI-NQQEQGAGTSAASQKSAC 213 Score = 118 (41.5 bits), Expect = 5.7e-05, P = 5.7e-05 Identities = 23/33 (69%), Positives = 28/33 (84%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQ 457 +VFFSIA+DIKQRLA+TD+K EP TIKI + Q Sbjct: 168 EVFFSIAKDIKQRLAETDSKTEPQTIKINQQEQ 200
>gi|2289961|gb|AAB65088.1| (U82434) AtRAB8 [Arabidopsis thaliana] >gi|6729512|emb|CAB67668.1| (AL132966) GTPase AtRAB8 [Arabidopsis thaliana] Length = 216 Frame 2 hits (HSPs): _________ Frame 1 hits (HSPs): _______________________________________ __________________________________________________ Database sequence: | | | | | | 216 0 50 100 150 200 Plus Strand HSPs: Score = 627 (220.7 bits), Expect = 2.2e-60, P = 2.2e-60 Identities = 130/164 (79%), Positives = 137/164 (83%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASD+VNKILVGNKADMDESKRAVP SKGQALADEYG+KFFETSAKTNLNVEE Sbjct: 110 IRNIEQHASDSVNKILVGNKADMDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEV 169 Query: 364 FLLNSKRYKTKAG*H*HQG--RTINNQNHQDQSGKAGQAAQKSAC 492 F +K K + + +TI N DQ QA QKSAC Sbjct: 170 FFSIAKDIKQRLADTDARAEPQTIKI-NQSDQGAGTSQATQKSAC 213 Score = 124 (43.7 bits), Expect = 5.6e-06, P = 5.6e-06 Identities = 24/33 (72%), Positives = 29/33 (87%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQ 457 +VFFSIA+DIKQRLADTD +AEP TIKI ++ Q Sbjct: 168 EVFFSIAKDIKQRLADTDARAEPQTIKINQSDQ 200
>gi|3024527|sp|Q39433|RAB1_BETVU RAS-RELATED PROTEIN RAB1BV >gi|7438390|pir||T14565 GTP-binding protein - beet >gi|974776|emb|CAA89021.1| (Z49152) small G protein [Beta vulgaris] Length = 215 Frame 2 hits (HSPs): ________ Frame 1 hits (HSPs): _______________________________________ Annotated Domains: _______________________________________________ __________________________________________________ Database sequence: | | | | | | 215 0 50 100 150 200 __________________ Annotated Domains: Entrez np-binding site: GTP (BY SIMILARITY). 22..29 Entrez np-binding site: GTP (BY SIMILARITY). 70..74 Entrez np-binding site: GTP (BY SIMILARITY). 128..131 Entrez lipid-binding site: GERANYL-GERANYL (BY 212 Entrez lipid-binding site: GERANYL-GERANYL (BY 213 PFAM ras: Ras family 17..215 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 16..37 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 39..55 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 57..79 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 119..132 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 155..177 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 14..179 PRODOM PD047433: RAB1_BETVU 181..214 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31 __________________ Plus Strand HSPs: Score = 623 (219.3 bits), Expect = 5.8e-60, P = 5.8e-60 Identities = 130/163 (79%), Positives = 137/163 (84%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEE Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEV 169 Query: 364 FLLNSKRYKTKAG*H*--HQGRTINNQNHQDQSGKAGQAAQKSAC 492 F ++ K + + + DQSG QAA KSAC Sbjct: 170 FFSIARDIKQRLADSDTRQEAQPSITIKPADQSGN--QAAAKSAC 212 Score = 98 (34.5 bits), Expect = 0.028, P = 0.027 Identities = 23/30 (76%), Positives = 27/30 (90%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTK--AEPS-TIK 439 +VFFSIARDIKQRLAD+DT+ A+PS TIK Sbjct: 168 EVFFSIARDIKQRLADSDTRQEAQPSITIK 197
>gi|7378637|emb|CAB83313.1| (AL162751) GTP-binding protein-like [Arabidopsis thaliana] Length = 216 Frame 2 hits (HSPs): ________ Frame 1 hits (HSPs): ______________________________________ __________________________________________________ Database sequence: | | | | | | 216 0 50 100 150 200 Plus Strand HSPs: Score = 608 (214.0 bits), Expect = 2.3e-58, P = 2.3e-58 Identities = 128/163 (78%), Positives = 139/163 (85%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRT+ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW Sbjct: 50 IDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 ++NIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE Sbjct: 110 MKNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVENV 169 Query: 364 FLLNSKRYK-------TKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492 F+ +K K TKA QG I Q+ + + A+KSAC Sbjct: 170 FMSIAKDIKQRLTETDTKAE---PQGIKITKQD----TAASSSTAEKSAC 212 Score = 113 (39.8 bits), Expect = 0.00029, P = 0.00029 Identities = 23/29 (79%), Positives = 25/29 (86%), Frame = +2 Query: 362 VFFSIARDIKQRLADTDTKAEPSTIKITK 448 VF SIA+DIKQRL +TDTKAEP IKITK Sbjct: 169 VFMSIAKDIKQRLTETDTKAEPQGIKITK 197
>gi|6681329|gb|AAF23246.1|AC015985_4 (AC015985) putative Ras-like GTP-binding protein [Arabidopsis thaliana] Length = 218 Frame 2 hits (HSPs): _________ Frame 1 hits (HSPs): ______________________________________ __________________________________________________ Database sequence: | | | | | | 218 0 50 100 150 200 Plus Strand HSPs: Score = 602 (211.9 bits), Expect = 9.8e-58, P = 9.8e-58 Identities = 128/165 (77%), Positives = 138/165 (83%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRT+ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW Sbjct: 50 IDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 ++NIEQHASD+VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN NVE+ Sbjct: 110 MKNIEQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNQNVEQV 169 Query: 364 FLLNSKRYK-------TKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492 FL +K K TKA QG I Q+ S + +KSAC Sbjct: 170 FLSIAKDIKQRLTESDTKAE---PQGIKITKQDANKASSSSTN--EKSAC 214 Score = 113 (39.8 bits), Expect = 0.00030, P = 0.00030 Identities = 23/35 (65%), Positives = 27/35 (77%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQEK 463 +VF SIA+DIKQRL ++DTKAEP IKITK K Sbjct: 168 QVFLSIAKDIKQRLTESDTKAEPQGIKITKQDANK 202
>gi|1370194|emb|CAA98174.1| (Z73946) RAB8C [Lotus japonicus] Length = 212 Frame 2 hits (HSPs): ________ Frame 1 hits (HSPs): _______________________________________ __________________________________________________ Database sequence: | | | | | | 212 0 50 100 150 200 Plus Strand HSPs: Score = 601 (211.6 bits), Expect = 1.2e-57, P = 1.2e-57 Identities = 128/163 (78%), Positives = 134/163 (82%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQER RTITTAYYRGA GILLVYDVTDE+SFNNIRNW Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERVRTITTAYYRGAKGILLVYDVTDESSFNNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 Query: 364 FLLNSKRYKTKAG*H*HQG--RTINNQNHQDQSGKAGQAAQKSAC 492 F ++ K + + +TI N DQ AAQ S C Sbjct: 170 FFSIARDIKQRLADTDSKAEPQTIKI-NQPDQPA----AAQNSTC 209 Score = 129 (45.4 bits), Expect = 4.3e-07, P = 4.3e-07 Identities = 26/33 (78%), Positives = 29/33 (87%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQ 457 +VFFSIARDIKQRLADTD+KAEP TIKI + Q Sbjct: 168 EVFFSIARDIKQRLADTDSKAEPQTIKINQPDQ 200
>gi|134228|sp|P20790|SAS1_DICDI GTP-BINDING PROTEIN SAS1 >gi|102241|pir||A34716 GTP-binding protein SAS1 - slime mold (Dictyostelium discoideum) >gi|167877|gb|AAA33249.1| (M34457) GTP-binding protein (SAS2) [Dictyostelium discoideum] Length = 208 Frame 2 hits (HSPs): _______ Frame 1 hits (HSPs): ________________________________ Annotated Domains: ________________________________________________ __________________________________________________ Database sequence: | | | | | | 208 0 50 100 150 200 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 12..157 Entrez np-binding site: GTP (BY SIMILARITY). 22..29 Entrez np-binding site: GTP (BY SIMILARITY). 70..74 Entrez np-binding site: GTP (BY SIMILARITY). 128..131 Entrez lipid-binding site: PALMITATE (BY SIMILA 207 Entrez lipid-binding site: PALMITATE (BY SIMILA 208 PFAM ras: Ras family 17..208 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 16..37 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 39..55 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 57..79 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 119..132 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 154..176 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 14..178 PRODOM PD046143: SAS1_DICDI 180..207 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31 __________________ Plus Strand HSPs: Score = 524 (184.5 bits), Expect = 1.5e-53, Sum P(2) = 1.5e-53 Identities = 101/131 (77%), Positives = 117/131 (89%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNW Sbjct: 50 IDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHA+D+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE+ Sbjct: 110 IRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEA 168 Query: 364 FLLNSKRYKTK 396 F+ +K K + Sbjct: 169 FISLAKDIKKR 179 Score = 56 (19.7 bits), Expect = 1.5e-53, Sum P(2) = 1.5e-53 Identities = 10/27 (37%), Positives = 19/27 (70%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIK 439 + F S+A+DIK+R+ DT + +P ++ Sbjct: 167 EAFISLAKDIKKRMIDTPNE-QPQVVQ 192
>gi|134236|sp|P20791|SAS2_DICDI GTP-BINDING PROTEIN SAS2 >gi|102242|pir||B34716 GTP-binding protein SAS2 - slime mold (Dictyostelium discoideum) >gi|167875|gb|AAA33248.1| (M34456) GTP-binding protein (SAS1) [Dictyostelium discoideum] Length = 203 Frame 2 hits (HSPs): _________ Frame 1 hits (HSPs): ________________________________ Annotated Domains: ________________________________________________ __________________________________________________ Database sequence: | | | | || 203 0 50 100 150 200 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 12..157 Entrez np-binding site: GTP (BY SIMILARITY). 22..29 Entrez np-binding site: GTP (BY SIMILARITY). 70..74 Entrez np-binding site: GTP (BY SIMILARITY). 128..131 Entrez lipid-binding site: PALMITATE (BY SIMILA 202 Entrez lipid-binding site: PALMITATE (BY SIMILA 203 PFAM ras: Ras family 17..194 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 16..37 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 39..55 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 57..79 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 119..132 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 154..176 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 14..178 PRODOM PD045188: SAS2_DICDI 180..202 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31 __________________ Plus Strand HSPs: Score = 520 (183.0 bits), Expect = 6.4e-53, Sum P(2) = 6.4e-53 Identities = 101/131 (77%), Positives = 117/131 (89%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNW Sbjct: 50 IDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNW 109 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIEQHASD+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE+ Sbjct: 110 IRNIEQHASDSVNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEA 168 Query: 364 FLLNSKRYKTK 396 F+ +K K + Sbjct: 169 FIGLAKDIKKR 179 Score = 54 (19.0 bits), Expect = 6.4e-53, Sum P(2) = 6.4e-53 Identities = 12/34 (35%), Positives = 21/34 (61%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQE 460 + F +A+DIK+R+ DT + TI IT +++ Sbjct: 167 EAFIGLAKDIKKRMIDTPNDPD-HTICITPNNKK 199
>gi|4885483 ref|NP_005361.1| mel transforming oncogene; RAB8 homolog; ras-associated protein RAB8 >gi|234746|gb|AAB19681.1| (S53268) MEL=RAS-related [human, Peptide, 206 aa] [Homo sapiens] Length = 206 Frame 2 hits (HSPs): _________ Frame 1 hits (HSPs): ________________________________ __________________________________________________ Database sequence: | | | | | | 206 0 50 100 150 200 Plus Strand HSPs: Score = 481 (169.3 bits), Expect = 1.3e-48, Sum P(2) = 1.3e-48 Identities = 92/131 (70%), Positives = 111/131 (84%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNW Sbjct: 43 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK N+NVE + Sbjct: 103 IRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENA 161 Query: 364 FLLNSKRYKTK 396 F ++ K K Sbjct: 162 FFTLARDIKAK 172 Score = 52 (18.3 bits), Expect = 1.3e-48, Sum P(2) = 1.3e-48 Identities = 15/36 (41%), Positives = 23/36 (63%), Frame = +2 Query: 365 FFSIARDIKQRLADTDTKAE-PST---IKITKTSQEK 463 FF++ARDIK ++ D KA P + +KIT Q++ Sbjct: 162 FFTLARDIKAKM-DKKWKATAPGSNQGVKITPDQQKR 197
>gi|1710002|sp|P55258|RAB8_MOUSE RAS-RELATED PROTEIN RAB-8 (ONCOGENE C-MEL) >gi|2118463|pir||I78851 GTP-binding protein MEL - mouse >gi|234748|gb|AAB19682.1| (S53270) MEL=RAS-related [mice, Peptide, 206 aa] [Mus sp.] Length = 206 Frame 2 hits (HSPs): _________ Frame 1 hits (HSPs): ________________________________ Annotated Domains: _________________________________________________ __________________________________________________ Database sequence: | | | | | | 206 0 50 100 150 200 __________________ Annotated Domains: Entrez np-binding site: GTP (BY SIMILARITY). 15..22 Entrez np-binding site: GTP (BY SIMILARITY). 63..67 Entrez np-binding site: GTP (BY SIMILARITY). 121..124 Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 37..45 Entrez lipid-binding site: GERANYL-GERANYL (BY 203 PFAM ras: Ras family 10..206 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 9..30 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 32..48 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 50..72 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 112..125 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 147..169 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..171 PRODOM PD047184: RAB8_MOUSE 173..205 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24 __________________ Plus Strand HSPs: Score = 481 (169.3 bits), Expect = 2.1e-48, Sum P(2) = 2.1e-48 Identities = 92/131 (70%), Positives = 111/131 (84%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNW Sbjct: 43 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK N+NVE + Sbjct: 103 IRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENA 161 Query: 364 FLLNSKRYKTK 396 F ++ K K Sbjct: 162 FFTLARDIKAK 172 Score = 50 (17.6 bits), Expect = 2.1e-48, Sum P(2) = 2.1e-48 Identities = 14/36 (38%), Positives = 23/36 (63%), Frame = +2 Query: 365 FFSIARDIKQRLADTDTKAEPST----IKITKTSQEK 463 FF++ARDIK ++ D + KA + +KIT Q++ Sbjct: 162 FFTLARDIKAKM-DKNWKATAAGSSHGVKITVEQQKR 197
>gi|549809|sp|P36861|YPT2_VOLCA GTP-BINDING PROTEIN YPTV2 >gi|486944|pir||S36365 GTP-binding protein yptV2 - Volvox carteri >gi|409162|gb|AAA34251.1| (L08128) GTP-binding protein [Volvox carteri] Length = 217 Frame 1 hits (HSPs): ____________________________________ Annotated Domains: ________________________________________________ __________________________________________________ Database sequence: | | | | | | 217 0 50 100 150 200 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 10..156 Entrez np-binding site: GTP (BY SIMILARITY). 20..27 Entrez np-binding site: GTP (BY SIMILARITY). 68..72 Entrez np-binding site: GTP (BY SIMILARITY). 126..129 Entrez Domain: EFFECTOR REGION (PROBABLE). 42..50 Entrez lipid-binding site: GERANYL-GERANYL (BY 215 Entrez lipid-binding site: GERANYL-GERANYL (BY 216 PFAM ras: Ras family 15..217 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 14..35 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 37..53 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 55..77 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 117..130 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 153..175 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 13..177 PRODOM PD046366: YPT2_VOLCA 179..216 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 20..27 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 16..29 __________________ Plus Strand HSPs: Score = 513 (180.6 bits), Expect = 2.6e-48, P = 2.6e-48 Identities = 99/156 (63%), Positives = 122/156 (78%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKI+ +++DGK +KLQIWDTAGQERFRTIT+AYYRGA GI+LVYD+TDEASFNN+RNW Sbjct: 48 IDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNW 107 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 +RNIEQHASDNVNKILVGNK D+ E KR V ++GQALADE+G +F+ETSAK N++VEE+ Sbjct: 108 MRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEA 167 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQ 471 F+ +K + +G N Q Q Q A Q Sbjct: 168 FIAVAKDVLARM-----EGEHANQQLLQQQQLSAAQ 198
>gi|141305|sp|P17609|YPT2_SCHPO YPT1-RELATED PROTEIN 2 >gi|101034|pir||S12790 GTP-binding protein ypt2 - fission yeast (Schizosaccharomyces pombe) >gi|5144|emb|CAA36707.1| (X52469) ypt2 gene product (AA 1-200) [Schizosaccharomyces pombe] >gi|5150|emb|CAA37045.1| (X52864) ypt-related protein (AA 1-200) [Schizosaccharomyces pombe] >gi|2414662|emb|CAB16405.1| (Z99262) ypt1-related protein 2 [Schizosaccharomyces pombe] Length = 200 Frame 2 hits (HSPs): _____ Frame 1 hits (HSPs): _________________________________ Annotated Domains: _________________________________________________ __________________________________________________ Database sequence: | | | | | 200 0 50 100 150 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 6..151 Entrez np-binding site: GTP (BY SIMILARITY). 16..23 Entrez np-binding site: GTP (BY SIMILARITY). 64..68 Entrez np-binding site: GTP (BY SIMILARITY). 122..125 Entrez Domain: EFFECTOR REGION (PROBABLE). 38..46 Entrez lipid-binding site: GERANYL-GERANYL (BY 199 Entrez lipid-binding site: GERANYL-GERANYL (BY 200 PFAM ras: Ras family 11..200 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 10..31 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 33..49 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 51..73 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 113..126 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 148..170 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 8..173 PRODOM PD045608: YPT2_SCHPO 175..199 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 16..23 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 12..25 __________________ Plus Strand HSPs: Score = 485 (170.7 bits), Expect = 3.5e-48, Sum P(2) = 3.5e-48 Identities = 93/129 (72%), Positives = 108/129 (83%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W Sbjct: 44 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTW 103 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 N+EQHAS+NV KIL+GNK D E +R V +GQALADE G+KF E SAKTN+NV+E+ Sbjct: 104 FSNVEQHASENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEA 162 Query: 364 FLLNSKRYK 390 F ++ K Sbjct: 163 FFTLAREIK 171 Score = 44 (15.5 bits), Expect = 3.5e-48, Sum P(2) = 3.5e-48 Identities = 7/20 (35%), Positives = 15/20 (75%), Frame = +2 Query: 359 KVFFSIARDIKQRLADTDTK 418 + FF++AR+IK++ D + + Sbjct: 161 EAFFTLAREIKKQKIDAENE 180
>gi|131798|sp|P24407|RAB8_HUMAN RAS-RELATED PROTEIN RAB-8 (ONCOGENE C-MEL) >gi|108113|pir||B36364 GTP-binding protein rab8 - dog >gi|539607|pir||B49647 GTP-binding protein rab8 - human >gi|452318|emb|CAA40065.1| (X56741) rab8 small GTP binding protein [Homo sapiens] >gi|6006436|emb|CAB56776.1| (X56385) rab8 [Canis familiaris] >gi|740474|prf||2005309A rab8 GTPase [Homo sapiens] Length = 207 Frame 2 hits (HSPs): __________ Frame 1 hits (HSPs): ________________________________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | | 207 0 50 100 150 200 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 5..150 Entrez np-binding site: GTP (BY SIMILARITY). 15..22 Entrez np-binding site: GTP (BY SIMILARITY). 63..67 Entrez np-binding site: GTP (BY SIMILARITY). 121..124 Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 37..45 Entrez lipid-binding site: GERANYL-GERANYL (BY 204 PFAM ras: Ras family 10..207 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 9..30 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 32..48 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 50..72 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 112..125 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 147..169 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..171 PRODOM PD047435: RAB8_HUMAN 173..206 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24 __________________ Plus Strand HSPs: Score = 481 (169.3 bits), Expect = 3.5e-48, Sum P(2) = 3.5e-48 Identities = 92/131 (70%), Positives = 111/131 (84%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNW Sbjct: 43 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK N+NVE + Sbjct: 103 IRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENA 161 Query: 364 FLLNSKRYKTK 396 F ++ K K Sbjct: 162 FFTLARDIKAK 172 Score = 48 (16.9 bits), Expect = 3.5e-48, Sum P(2) = 3.5e-48 Identities = 12/37 (32%), Positives = 20/37 (54%), Frame = +2 Query: 365 FFSIARDIK----QRLADTDTKAEPSTIKITKTSQEK 463 FF++ARDIK ++L + +KIT Q++ Sbjct: 162 FFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKR 198
>gi|2500066|sp|P70550|RB8B_RAT RAS-RELATED PROTEIN RAB-8B >gi|1314637|gb|AAA99782.1| (U53475) GTPase Rab8b [Rattus norvegicus] Length = 207 Frame 1 hits (HSPs): _______________________________________ Annotated Domains: _________________________________________________ __________________________________________________ Database sequence: | | | | | | 207 0 50 100 150 200 __________________ Annotated Domains: Entrez np-binding site: GTP (BY SIMILARITY). 15..22 Entrez np-binding site: GTP (BY SIMILARITY). 63..67 Entrez np-binding site: GTP (BY SIMILARITY). 121..124 Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 37..45 Entrez lipid-binding site: GERANYL-GERANYL (BY 204 PFAM ras: Ras family 10..207 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 9..30 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 32..48 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 50..72 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 112..125 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 147..169 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..171 PRODOM PD047437: RB8B_RAT 173..206 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24 __________________ Plus Strand HSPs: Score = 480 (169.0 bits), Expect = 8.3e-45, P = 8.3e-45 Identities = 97/164 (59%), Positives = 123/164 (75%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NW Sbjct: 43 IDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIE+HAS +V ++++GNK DM++ KR V +G+ LA +YGIKF ETSAK++ NVEE+ Sbjct: 103 IRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEA 161 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSG--KAGQAAQKSACF 495 F ++ TK R +N+ N G K ++ K F Sbjct: 162 FFTLARDIMTKLN------RKMNDSNSSGAGGPVKITESRSKKTSF 201
>gi|131848|sp|P22128|RAB8_DISOM RAS-RELATED PROTEIN RAB-8 (ORA2) >gi|213119|gb|AAA49232.1| (M38391) GTP-binding protein [Discopyge ommata] Length = 210 Frame 1 hits (HSPs): _______________________________ Annotated Domains: _________________________________________________ __________________________________________________ Database sequence: | | | | | | 210 0 50 100 150 200 __________________ Annotated Domains: Entrez np-binding site: GTP (BY SIMILARITY). 15..22 Entrez np-binding site: GTP (BY SIMILARITY). 63..67 Entrez np-binding site: GTP (BY SIMILARITY). 121..124 Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 37..45 Entrez lipid-binding site: GERANYL-GERANYL (BY 207 PFAM ras: Ras family 10..210 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 9..30 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 32..48 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 50..72 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 112..125 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 147..169 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..171 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24 __________________ Plus Strand HSPs: Score = 477 (167.9 bits), Expect = 1.7e-44, P = 1.7e-44 Identities = 89/131 (67%), Positives = 113/131 (86%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRT+ELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+ VYD+T+E SF+NI+NW Sbjct: 43 IDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIE+HAS +V ++++GNK DM+E KR V +G+ LA +YGIKF ETSAK+++NVEE+ Sbjct: 103 IRNIEEHASSDVERMILGNKCDMNE-KRQVSKERGEKLAIDYGIKFLETSAKSSINVEEA 161 Query: 364 FLLNSKRYKTK 396 F+ ++ TK Sbjct: 162 FITLARDIMTK 172
>gi|7498104|pir||T33855 hypothetical protein D1037.4 - Caenorhabditis elegans >gi|3893875|gb|AAC78494.1| (AF106592) contains similarity to the RAS family (Pfam: PF00071, score=220.5, E=2.4e-62, N=1) [Caenorhabditis elegans] Length = 224 Frame 1 hits (HSPs): ______________________________ __________________________________________________ Database sequence: | | | | | | 224 0 50 100 150 200 Plus Strand HSPs: Score = 476 (167.6 bits), Expect = 2.2e-44, P = 2.2e-44 Identities = 88/131 (67%), Positives = 111/131 (84%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF NI+NW Sbjct: 43 IDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIE+HA+ +V ++++GNK D++E +R V +G+ LA EYG KF ETSAK NLN++E+ Sbjct: 103 IRNIEEHAASDVERMIIGNKCDIEE-RREVSRDRGEQLAIEYGTKFLETSAKANLNIDEA 161 Query: 364 FLLNSKRYKTK 396 F ++ K+K Sbjct: 162 FFTLARDIKSK 172
>gi|7706563 ref|NP_057614.1| RAB-8b protein >gi|7209512|dbj|BAA92249.1| (AB038995) RAB-8b protein [Homo sapiens] Length = 207 Frame 1 hits (HSPs): ________________________________ __________________________________________________ Database sequence: | | | | | | 207 0 50 100 150 200 Plus Strand HSPs: Score = 476 (167.6 bits), Expect = 2.2e-44, P = 2.2e-44 Identities = 90/131 (68%), Positives = 112/131 (85%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NW Sbjct: 43 IDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIE+HAS +V ++++GNK DM++ KR V +G+ LA +YGIKF ETSAK++ NVEE+ Sbjct: 103 IRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSANVEEA 161 Query: 364 FLLNSKRYKTK 396 F ++ TK Sbjct: 162 FFTLARDIMTK 172
>gi|103724|pir||B38625 GTP-binding protein ora2 - electric ray (Discopyge ommata) Length = 209 Frame 1 hits (HSPs): _______________________________ Annotated Domains: ____ __________________________________________________ Database sequence: | | | | | | 209 0 50 100 150 200 __________________ Annotated Domains: PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24 __________________ Plus Strand HSPs: Score = 468 (164.7 bits), Expect = 1.5e-43, P = 1.5e-43 Identities = 89/131 (67%), Positives = 113/131 (86%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRT+ELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+ VYD+T+E SF+NI+NW Sbjct: 43 IDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIE+HAS +V ++++GNK DM+E KR V +G+ LA +YGIKF ETSAK+++NVEE+ Sbjct: 103 IRNIEEHASSDVERMILGNKCDMNE-KRQVSKERGEKLAIDYGIKF-ETSAKSSINVEEA 160 Query: 364 FLLNSKRYKTK 396 F+ ++ TK Sbjct: 161 FITLARDIMTK 171
>gi|2313045|dbj|BAA21711.1| (D84347) rab8 [Drosophila melanogaster] >gi|7293732|gb|AAF49101.1| (AE003515) Rab8 gene product [Drosophila melanogaster] Length = 207 Frame 1 hits (HSPs): ________________________________ __________________________________________________ Database sequence: | | | | | | 207 0 50 100 150 200 Plus Strand HSPs: Score = 463 (163.0 bits), Expect = 5.2e-43, P = 5.2e-43 Identities = 90/131 (68%), Positives = 108/131 (82%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTIELD K+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T E SF NI+NW Sbjct: 43 IDFKIRTIELDNKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 IRNIE++AS +V K+L+GNK ++ + KR V +G+ LA EYGIKF ETSAK ++NVEE+ Sbjct: 103 IRNIEENASADVEKMLLGNKCELTD-KRQVSKERGEQLAIEYGIKFMETSAKASINVEEA 161 Query: 364 FLLNSKRYKTK 396 FL + K K Sbjct: 162 FLTLASDIKAK 172
>gi|1173333|sp|P41924|RYL1_YARLI RAS-LIKE GTP-BINDING PROTEIN RYL1 >gi|173257|gb|AAA35245.1| (L06969) ras-like protein [Yarrowia lipolytica] >gi|1097101|prf||2113252A Rab protein [Yarrowia lipolytica] Length = 203 Frame 1 hits (HSPs): ______________________________ Annotated Domains: _________________________________________________ __________________________________________________ Database sequence: | | | | || 203 0 50 100 150 200 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 8..153 Entrez np-binding site: GTP (BY SIMILARITY). 18..25 Entrez np-binding site: GTP (BY SIMILARITY). 66..70 Entrez np-binding site: GTP (BY SIMILARITY). 124..127 Entrez Domain: EFFECTOR REGION (PROBABLE). 40..48 Entrez lipid-binding site: GERANYL-GERANYL (BY 202 Entrez lipid-binding site: GERANYL-GERANYL (BY 203 PFAM ras: Ras family 13..203 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 12..33 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 35..51 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 53..75 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 115..128 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 150..172 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 11..172 PRODOM PD046354: RYL1_YARLI 174..202 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 18..25 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 14..27 __________________ Plus Strand HSPs: Score = 461 (162.3 bits), Expect = 8.5e-43, P = 8.5e-43 Identities = 86/121 (71%), Positives = 103/121 (85%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTI++ +R+KLQ+WDTAGQERFRTITTAYYRGAMGILLVYDVTDE SFNNI NW Sbjct: 46 IDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENW 105 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 +N++ +A++ V ILVGNK D+DE KR V T +GQALAD++GI F E S+KTN+NVEE Sbjct: 106 YQNVQSYANEGVELILVGNKCDLDE-KRVVSTEQGQALADKFGIPFLEASSKTNINVEEC 164 Query: 364 F 366 F Sbjct: 165 F 165
>gi|2133238|pir||S51495 GTP-binding protein RYL1 - yeast (Yarrowia lipolytica) Length = 203 Frame 1 hits (HSPs): ______________________________ Annotated Domains: ____ __________________________________________________ Database sequence: | | | | || 203 0 50 100 150 200 __________________ Annotated Domains: PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 18..25 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 14..27 __________________ Plus Strand HSPs: Score = 460 (161.9 bits), Expect = 1.1e-42, P = 1.1e-42 Identities = 86/121 (71%), Positives = 103/121 (85%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRTI++ +R+KLQ+WDTAGQERFRTITTAYYRGAMGILLVYDVTDE SFNNI NW Sbjct: 46 IDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENW 105 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 +N++ +A++ V ILVGNK D+DE KR V T +GQALAD++GI F E S+KTN+NVEE Sbjct: 106 YQNVQTYANEGVELILVGNKCDLDE-KRVVSTEQGQALADKFGIPFLEASSKTNINVEEC 164 Query: 364 F 366 F Sbjct: 165 F 165
>gi|131804|sp|P24409|RB10_CANFA RAS-RELATED PROTEIN RAB-10 >gi|108104|pir||D36364 GTP-binding protein rab10 - dog >gi|915|emb|CAA39798.1| (X56387) rab10 [Canis familiaris] Length = 200 Frame 1 hits (HSPs): ________________________________________ Annotated Domains: _________________________________________________ __________________________________________________ Database sequence: | | | | | 200 0 50 100 150 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 6..151 Entrez np-binding site: GTP (BY SIMILARITY). 16..23 Entrez np-binding site: GTP (BY SIMILARITY). 64..68 Entrez np-binding site: GTP (BY SIMILARITY). 122..125 Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 38..46 Entrez lipid-binding site: GERANYL-GERANYL (BY 199 Entrez lipid-binding site: GERANYL-GERANYL (BY 200 PFAM ras: Ras family 11..200 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 10..31 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 33..49 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 51..73 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 113..126 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 148..170 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 9..172 PRODOM PD025962: RB10(3) 174..199 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 16..23 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 12..25 __________________ Plus Strand HSPs: Score = 458 (161.2 bits), Expect = 1.8e-42, P = 1.8e-42 Identities = 90/163 (55%), Positives = 120/163 (73%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+ SF NI W Sbjct: 44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW 103 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 +RNI++HA+++V ++L+GNK DMD+ KR VP KG+ +A E+GI+FFETSAK N+N+E++ Sbjct: 104 LRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKVNINIEKA 162 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492 FL ++ K + N++N SG G KS C Sbjct: 163 FLTLAEDILRKT-----PVKEPNSENVDISSG-GGVTGWKSKC 199
>gi|420269|pir||B42148 GTP-binding protein rab10 - rat Length = 200 Frame 1 hits (HSPs): ________________________________________ Annotated Domains: _____ _ __________________________________________________ Database sequence: | | | | | 200 0 50 100 150 __________________ Annotated Domains: Entrez binding site: geranyl-geranyl (Cys) (cov 200 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 16..23 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 12..25 __________________ Plus Strand HSPs: Score = 458 (161.2 bits), Expect = 1.8e-42, P = 1.8e-42 Identities = 90/163 (55%), Positives = 120/163 (73%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+ SF NI W Sbjct: 44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW 103 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 +RNI++HA+++V ++L+GNK DMD+ KR VP KG+ +A E+GI+FFETSAK N+N+E++ Sbjct: 104 LRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKA 162 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492 FL ++ K + N++N SG G KS C Sbjct: 163 FLTLAEDILRKT-----PVKEPNSENVDISSG-GGVTGWKSKC 199
>gi|7705849 ref|NP_057215.1| ras-related GTP-binding protein >gi|7710086 ref|NP_057885.1|| RAB10, member RAS oncogene family >gi|6093898|sp|O88386|RB10_MOUSE RAS-RELATED PROTEIN RAB-10 >gi|3406428|gb|AAC29313.1| (AF035646) Rab10 [Mus musculus] >gi|5410328|gb|AAD43034.1| (AF106681) ras-related GTP-binding protein [Homo sapiens] Length = 200 Frame 1 hits (HSPs): ________________________________________ __________________________________________________ Database sequence: | | | | | 200 0 50 100 150 Plus Strand HSPs: Score = 458 (161.2 bits), Expect = 1.8e-42, P = 1.8e-42 Identities = 90/163 (55%), Positives = 120/163 (73%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+ SF NI W Sbjct: 44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW 103 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 +RNI++HA+++V ++L+GNK DMD+ KR VP KG+ +A E+GI+FFETSAK N+N+E++ Sbjct: 104 LRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKA 162 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492 FL ++ K + N++N SG G KS C Sbjct: 163 FLTLAEDILRKT-----PVKEPNSENVDISSG-GGVTGWKSKC 199
>gi|541978|pir||S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean >gi|303734|dbj|BAA02118.1| (D12550) GTP-binding protein [Pisum sativum] >gi|452359|emb|CAA82707.1| (Z29590) guanine nucleotide regulatory protein [Vicia faba] >gi|738942|prf||2001457K GTP-binding protein [Pisum sativum] >gi|1098293|prf||2115367A small GTP-binding protein [Vicia faba] Length = 202 Frame 1 hits (HSPs): ________________________________________ Annotated Domains: _____________________________________ __________________________________________________ Database sequence: | | | | || 202 0 50 100 150 200 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 5..150 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24 __________________ Plus Strand HSPs: Score = 448 (157.7 bits), Expect = 2.0e-41, P = 2.0e-41 Identities = 89/163 (54%), Positives = 113/163 (69%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 +DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W Sbjct: 43 VDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 + I+++ASDNVNK+LVGNK D+ E+ RAVP +A ADE GI F ETSAK + NVE++ Sbjct: 103 LSEIDRYASDNVNKLLVGNKCDLTEN-RAVPYETAKAFADEIGIPFMETSAKDSTNVEQA 161 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492 F+ + K + + NN + QKS C Sbjct: 162 FMAMASSIKERMA-----SQPTNNARPPTVQIRGQPVGQKSGC 199
>gi|730510|sp|P40392|RIC1_ORYSA RAS-RELATED PROTEIN RIC1 >gi|542150|pir||S38740 GTP-binding protein - rice >gi|432607|gb|AAB28535.1| (S66160) ras-related GTP binding protein possessing GTPase activity=ric1 [Oryza sativa=rice, var. Yamahoushi, callus, Peptide, 202 aa] Length = 202 Frame 1 hits (HSPs): ________________________________________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | || 202 0 50 100 150 200 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 5..150 Entrez np-binding site: GTP (BY SIMILARITY). 15..22 Entrez np-binding site: GTP (BY SIMILARITY). 63..67 Entrez np-binding site: GTP (BY SIMILARITY). 121..124 Entrez Domain: EFFECTOR REGION (PROBABLE). 37..45 Entrez lipid-binding site: PALMITATE (BY SIMILA 200 Entrez lipid-binding site: GERANYL-GERANYL (BY 201 PFAM ras: Ras family 10..202 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 9..30 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 32..48 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 50..72 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 112..125 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 147..169 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..171 PRODOM PD046353: RIC1_ORYSA 173..201 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24 __________________ Plus Strand HSPs: Score = 445 (156.6 bits), Expect = 4.2e-41, P = 4.2e-41 Identities = 90/163 (55%), Positives = 116/163 (71%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 +DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W Sbjct: 43 VDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 + I+++AS+NVNK+LVGNK D+ E+ R V G+ALADE GI F ETSAK NVE++ Sbjct: 103 LNEIDRYASENVNKLLVGNKCDLAEN-RVVSYEAGKALADEIGIPFLETSAKDATNVEKA 161 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492 F+ + K + QGRT ++ Q + A Q S C Sbjct: 162 FMTMAGEIKNRMA---SQGRTNASKPATVQMPRQPVAQQSSCC 201
>gi|81634|pir||PS0279 GTP-binding protein ara-5 - Arabidopsis thaliana (fragment) Length = 196 Frame 1 hits (HSPs): __________________________________ Annotated Domains: _____ __________________________________________________ Database sequence: | | | | | 196 0 50 100 150 __________________ Annotated Domains: PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 8..15 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 4..17 __________________ Plus Strand HSPs: Score = 443 (155.9 bits), Expect = 6.9e-41, P = 6.9e-41 Identities = 83/131 (63%), Positives = 105/131 (80%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 +DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W Sbjct: 36 VDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQW 95 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 + I+++ASDNVNK+LVGNK+D+ E+ RA+P +A ADE GI F ETSAK NVE++ Sbjct: 96 LSEIDRYASDNVNKLLVGNKSDLTEN-RAIPYETAKAFADEIGIPFMETSAKDATNVEQA 154 Query: 364 FLLNSKRYKTK 396 F+ S K + Sbjct: 155 FMAMSASIKER 165
>gi|217841|dbj|BAA00832.1| (D01027) small GTP-binding protein [Arabidopsis thaliana] Length = 195 Frame 1 hits (HSPs): __________________________________ __________________________________________________ Database sequence: | | | | | 195 0 50 100 150 Plus Strand HSPs: Score = 443 (155.9 bits), Expect = 6.9e-41, P = 6.9e-41 Identities = 83/131 (63%), Positives = 105/131 (80%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 +DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W Sbjct: 35 VDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQW 94 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 + I+++ASDNVNK+LVGNK+D+ E+ RA+P +A ADE GI F ETSAK NVE++ Sbjct: 95 LSEIDRYASDNVNKLLVGNKSDLTEN-RAIPYETAKAFADEIGIPFMETSAKDATNVEQA 153 Query: 364 FLLNSKRYKTK 396 F+ S K + Sbjct: 154 FMAMSASIKER 164
>gi|5902803|sp|P28188|ARA5_ARATH RAS-RELATED PROTEIN ARA-5 >gi|2317906|gb|AAC24370.1| (U89959) ARA-5 [Arabidopsis thaliana] Length = 258 Frame 1 hits (HSPs): __________________________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | | | 258 0 50 100 150 200 250 __________________ Annotated Domains: Entrez np-binding site: GTP (BY SIMILARITY). 70..77 Entrez np-binding site: GTP (BY SIMILARITY). 118..122 Entrez np-binding site: GTP (BY SIMILARITY). 176..179 Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 92..100 Entrez lipid-binding site: GERANYL-GERANYL (BY 255 Entrez lipid-binding site: GERANYL-GERANYL (BY 256 PFAM ras: Ras family 65..258 PRODOM PD195151: ARA5_ARATH 1..60 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 62..226 PRODOM PD005108: 228..257 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 70..77 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 66..79 __________________ Plus Strand HSPs: Score = 443 (155.9 bits), Expect = 6.9e-41, P = 6.9e-41 Identities = 83/131 (63%), Positives = 105/131 (80%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 +DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W Sbjct: 98 VDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQW 157 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 + I+++ASDNVNK+LVGNK+D+ E+ RA+P +A ADE GI F ETSAK NVE++ Sbjct: 158 LSEIDRYASDNVNKLLVGNKSDLTEN-RAIPYETAKAFADEIGIPFMETSAKDATNVEQA 216 Query: 364 FLLNSKRYKTK 396 F+ S K + Sbjct: 217 FMAMSASIKER 227
>gi|464553|sp|P35281|RB10_RAT RAS-RELATED PROTEIN RAB-10 >gi|455344|gb|AAA41991.1| (M83677) RAB10 [Rattus norvegicus] Length = 200 Frame 1 hits (HSPs): ________________________________________ Annotated Domains: _________________________________________________ __________________________________________________ Database sequence: | | | | | 200 0 50 100 150 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 6..151 Entrez np-binding site: GTP (BY SIMILARITY). 16..23 Entrez np-binding site: GTP (BY SIMILARITY). 64..68 Entrez np-binding site: GTP (BY SIMILARITY). 122..125 Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 38..46 Entrez lipid-binding site: GERANYL-GERANYL (BY 199 Entrez lipid-binding site: GERANYL-GERANYL (BY 200 PFAM ras: Ras family 11..200 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 10..31 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 33..49 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 51..73 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 113..126 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 148..170 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 9..172 PRODOM PD025962: RB10(3) 174..199 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 16..23 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 12..25 __________________ Plus Strand HSPs: Score = 441 (155.2 bits), Expect = 1.1e-40, P = 1.1e-40 Identities = 89/163 (54%), Positives = 116/163 (71%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+ SF NI W Sbjct: 44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW 103 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 +RNI+QHA+++V ++L+ NK DMD KR VP KG+ +A E+ I+FFETSAK N+N+E++ Sbjct: 104 LRNIDQHANEDVERMLLRNKCDMDH-KRVVPKGKGEQIAREHRIRFFETSAKANINIEKA 162 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492 FL + K + N++N SG G KS C Sbjct: 163 FLTLPEDILRKT-----PVKEPNSENVDISSG-GGVTGWKSKC 199
>gi|131847|sp|P22127|RAO1_DISOM RAS-RELATED PROTEIN ORA1 >gi|103723|pir||A38625 GTP-binding protein ora1 - electric ray (Discopyge ommata) >gi|213115|gb|AAA49230.1| (M38390) GTP-binding protein [Discopyge ommata] Length = 200 Frame 1 hits (HSPs): _______________________________ Annotated Domains: _________________________________________________ __________________________________________________ Database sequence: | | | | | 200 0 50 100 150 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 6..151 Entrez np-binding site: GTP (BY SIMILARITY). 16..23 Entrez np-binding site: GTP (BY SIMILARITY). 64..68 Entrez np-binding site: GTP (BY SIMILARITY). 122..125 PFAM ras: Ras family 11..200 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 10..31 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 33..49 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 51..73 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 113..126 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 148..170 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 9..172 PRODOM PD045794: RAO1_DISOM 174..199 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 16..23 PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 12..25 __________________ Plus Strand HSPs: Score = 440 (154.9 bits), Expect = 1.4e-40, P = 1.4e-40 Identities = 80/122 (65%), Positives = 104/122 (85%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+ SF NI W Sbjct: 44 IDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKW 103 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 +RNI++HA+++V ++L+GNK DM E KR V SKG+ +A E+ I+FFETSAK N+N+E++ Sbjct: 104 LRNIDEHANEDVERMLLGNKCDM-EDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKA 162 Query: 364 FL 369 FL Sbjct: 163 FL 164
>gi|1546067|gb|AAB08102.1| (U68069) GTPase SUrab10p [Strongylocentrotus purpuratus] Length = 178 Frame 1 hits (HSPs): ___________________________________ __________________________________________________ Database sequence: | | | | | 178 0 50 100 150 Plus Strand HSPs: Score = 438 (154.2 bits), Expect = 2.3e-40, P = 2.3e-40 Identities = 78/122 (63%), Positives = 104/122 (85%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKI+T+EL+GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+ E +F+NI W Sbjct: 21 IDFKIKTVELNGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIMQEKTFDNIAKW 80 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 +RNI++HA+++V K+L+GNK DMD+ KR + +G+ +A E GIKF ETSAK N+NVE++ Sbjct: 81 LRNIQEHANEDVEKMLLGNKCDMDD-KRMINKDRGETIAKENGIKFMETSAKANINVEQA 139 Query: 364 FL 369 F+ Sbjct: 140 FM 141
>gi|4506363 ref|NP_002861.1| RAB13, member RAS oncogene family >gi|1710016|sp|P51153|RB13_HUMAN RAS-RELATED PROTEIN RAB-13 >gi|539606|pir||A49647 GTP-binding protein Rab13 - human >gi|452320|emb|CAA53266.1| (X75593) rab 13 [Homo sapiens] >gi|740475|prf||2005309B rab13 GTPase [Homo sapiens] Length = 203 Frame 1 hits (HSPs): ___________________________________ __________________________________________________ Database sequence: | | | | || 203 0 50 100 150 200 Plus Strand HSPs: Score = 437 (153.8 bits), Expect = 3.0e-40, P = 3.0e-40 Identities = 84/146 (57%), Positives = 115/146 (78%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKIRT++++GK+IKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW Sbjct: 43 IDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 +++I+++AS V ++L+GNK DM E+KR V + LA E+GI+FFETSAK+++NV+E+ Sbjct: 103 MKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEA 161 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQN 441 F ++ K+G GR N N Sbjct: 162 FSSLARDILLKSG-----GRRSGNGN 182
>gi|2317272|dbj|BAA21744.1| (AB006189) Rab10 [Drosophila melanogaster] >gi|7295615|gb|AAF50924.1| (AE003572) Rab10 gene product [Drosophila melanogaster] Length = 204 Frame 1 hits (HSPs): ______________________________ __________________________________________________ Database sequence: | | | | | | 204 0 50 100 150 200 Plus Strand HSPs: Score = 435 (153.1 bits), Expect = 4.9e-40, P = 4.9e-40 Identities = 78/121 (64%), Positives = 104/121 (85%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+E SF NI W Sbjct: 44 IDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKW 103 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 +RNI++HA+++V K+++GNK DM + KR V +G+A+A E+GI+F ETSAK+N+N+E + Sbjct: 104 LRNIDEHANEDVEKMILGNKCDMTD-KRVVNKERGEAIAREHGIRFMETSAKSNINIERA 162 Query: 364 F 366 F Sbjct: 163 F 163
>gi|7438392|pir||T14391 GTP-binding protein homolog - turnip >gi|1448941|gb|AAB04618.1| (L48181) ypt-related protein [Brassica rapa] Length = 206 Frame 1 hits (HSPs): ________________________________________ __________________________________________________ Database sequence: | | | | | | 206 0 50 100 150 200 Plus Strand HSPs: Score = 434 (152.8 bits), Expect = 6.2e-40, P = 6.2e-40 Identities = 89/163 (54%), Positives = 114/163 (69%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 +DFKIRTIE DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD T+ SFNN++ W Sbjct: 43 VDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 + I+++A+D+V K+L+GNK DM ESK V T G+ALADE GI F ETSAK + NVE++ Sbjct: 103 LSEIDRYANDSVCKLLIGNKNDMVESK-VVSTETGKALADELGIPFLETSAKDSTNVEQA 161 Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492 FL + K K G H + +T + Q G+ Q C Sbjct: 162 FLTIAGEIKKKMGSHTNANKTSGSGTVQ-MKGQPIQQNNGGGC 203
>gi|7497231|pir||T33781 hypothetical protein C39F7.4 - Caenorhabditis elegans >gi|3806150|gb|AAC69218.1| (AF101310) similar to RAS-related proteins; contains similarity to ADP-ribosylation factors [Caenorhabditis elegans] Length = 205 Frame 1 hits (HSPs): _________________________________ __________________________________________________ Database sequence: | | | | | | 205 0 50 100 150 200 Plus Strand HSPs: Score = 434 (152.8 bits), Expect = 6.2e-40, P = 6.2e-40 Identities = 80/133 (60%), Positives = 107/133 (80%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 +DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+TD+ +FNN++ W Sbjct: 46 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDITDQETFNNVKQW 105 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 ++ I+++A +NVNK+LVGNK D+ +KRAV T Q A + GI F ETSAK++ NVE++ Sbjct: 106 LQEIDRYACENVNKLLVGNKCDLT-AKRAVETQAAQDYAGQLGIPFLETSAKSSTNVEQA 164 Query: 364 FLLNSKRYKTKAG 402 FL + K++ G Sbjct: 165 FLTMASEIKSRMG 177
>gi|466170|sp|P16976|YPT1_MAIZE GTP-BINDING PROTEIN YPTM1 >gi|283055|pir||A38202 GTP-binding protein - maize >gi|287833|emb|CAA44918.1| (X63277) yptm1 [Zea mays] Length = 208 Frame 1 hits (HSPs): ________________________________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | | 208 0 50 100 150 200 __________________ Annotated Domains: DOMO DM00006: RASTRANSFORMINGPROTEIN 5..150 Entrez np-binding site: GTP (BY SIMILARITY). 15..22 Entrez np-binding site: GTP (BY SIMILARITY). 63..67 Entrez np-binding site: GTP (BY SIMILARITY). 121..124 Entrez Domain: EFFECTOR REGION (PROBABLE). 37..45 Entrez lipid-binding site: PALMITATE (BY SIMILA 205 Entrez lipid-binding site: GERANYL-GERANYL (BY 206 PFAM ras: Ras family 10..208 PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 9..30 PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 32..48 PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 50..72 PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 112..125 PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 147..169 PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..172 PRODOM PD047443: YPT1_MAIZE 174..207 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22 __________________ Plus Strand HSPs: Score = 433 (152.4 bits), Expect = 7.9e-40, P = 7.9e-40 Identities = 83/133 (62%), Positives = 108/133 (81%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 +DFKIRT+E++GK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+TD SFNN++ W Sbjct: 43 VDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 + I+++A+D+V K+LVGNK D+ E+ RAV TS QA A E GI F ETSAK ++NVEE+ Sbjct: 103 LDEIDRYANDSVRKLLVGNKCDLAEN-RAVDTSVAQAYAQEVGIPFLETSAKESINVEEA 161 Query: 364 FLLNSKRYK-TKAG 402 FL S K +KAG Sbjct: 162 FLAMSAAIKKSKAG 175
>gi|7438373|pir||S72515 GTP-binding protein RAB1 - garden petunia >gi|4096662|gb|AAD10389.1| (U35026) Rab1-like small GTP-binding protein [Petunia x hybrida] Length = 202 Frame 1 hits (HSPs): _________________________________ __________________________________________________ Database sequence: | | | | || 202 0 50 100 150 200 Plus Strand HSPs: Score = 433 (152.4 bits), Expect = 7.9e-40, P = 7.9e-40 Identities = 82/133 (61%), Positives = 107/133 (80%), Frame = +1 Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183 +DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVT+ SFNN++ W Sbjct: 43 VDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQW 102 Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363 + I+++A+++V K+LVGNK D+ E+K V T G+ALADE GI F ETSAK ++NVE++ Sbjct: 103 LSEIDRYANESVCKLLVGNKCDLVENK-VVDTQTGKALADELGIPFLETSAKDSINVEQA 161 Query: 364 FLLNSKRYKTKAG 402 FL + K K G Sbjct: 162 FLTMAGEIKKKMG 174 WARNING: HSPs involving 1180 database sequences were not reported due to the limiting value of parameter B = 50. Parameters: filter=none matrix=BLOSUM62 V=50 B=50 E=10 gi H=1 sort_by_pvalue echofilter ctxfactor=6.00 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H Std. 0 BLOSUM62 0.318 0.135 0.401 +3 0 BLOSUM62 0.318 0.135 0.401 0.368 0.166 0.675 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +2 0 BLOSUM62 0.318 0.135 0.401 0.337 0.143 0.471 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +1 0 BLOSUM62 0.318 0.135 0.401 0.324 0.137 0.405 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -1 0 BLOSUM62 0.318 0.135 0.401 0.346 0.147 0.498 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -2 0 BLOSUM62 0.318 0.135 0.401 0.363 0.162 0.673 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -3 0 BLOSUM62 0.318 0.135 0.401 0.345 0.153 0.504 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +3 0 179 178 10. 75 3 12 22 0.11 34 31 0.11 37 +2 0 179 178 10. 75 3 12 22 0.11 34 31 0.11 37 +1 0 179 178 10. 75 3 12 22 0.11 34 31 0.11 37 -1 0 179 178 10. 75 3 12 22 0.11 34 31 0.11 37 -2 0 179 178 10. 75 3 12 22 0.11 34 31 0.11 37 -3 0 179 178 10. 75 3 12 22 0.11 34 31 0.11 37 Statistics: Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr Title: nr Release date: unknown Posted date: 8:50 PM CDT May 27, 2000 Format: BLAST # of letters in database: 158,518,215 # of sequences in database: 505,245 # of database sequences satisfying E: 1230 No. of states in DFA: 597 (59 KB) Total size of DFA: 212 KB (256 KB) Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00 No. of threads or processors used: 4 Search cpu time: 228.37u 1.07s 229.44t Elapsed: 00:01:39 Total cpu time: 228.50u 1.12s 229.62t Elapsed: 00:01:39 Start: Thu Feb 15 01:05:53 2001 End: Thu Feb 15 01:07:32 2001 WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000