R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 1180 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|7438394|pir||T14405 small GTP-binding protein rab-1 - turnip
>gi|1654144|gb|AAB17726.1| (U38471) small GTP-binding protein rab
[Brassica rapa]
Length = 222
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | 222
0 50 100 150 200
Plus Strand HSPs:
Score = 608 (214.0 bits), Expect = 3.4e-70, Sum P(2) = 3.4e-70
Identities = 118/121 (97%), Positives = 120/121 (99%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW
Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEE
Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEV 169
Query: 364 F 366
F
Sbjct: 170 F 170
Score = 130 (45.8 bits), Expect = 3.4e-70, Sum P(2) = 3.4e-70
Identities = 26/37 (70%), Positives = 34/37 (91%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQEKLD 469
+VFFSI RDIKQRL+DTD++AEP+TI+I++T QE LD
Sbjct: 168 EVFFSIGRDIKQRLSDTDSRAEPATIRISQTDQE-LD 203
>gi|479442|pir||S33900 GTP-binding protein ypt2 - tomato
>gi|313029|emb|CAA49600.1| (X69980) GTP-binding protein
[Lycopersicon esculentum]
Length = 216
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): _______________________________________
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31
__________________
Plus Strand HSPs:
Score = 654 (230.2 bits), Expect = 3.0e-63, P = 3.0e-63
Identities = 133/164 (81%), Positives = 140/164 (85%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW
Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE
Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQ-NHQDQSGKAGQAAQKSAC 492
F K K + + + + N DQ+G AGQ AQKS+C
Sbjct: 170 FFSIGKDIKQRLSESDSKTEPQSIRINQSDQAGTAGQGAQKSSC 213
Score = 102 (35.9 bits), Expect = 0.0085, P = 0.0084
Identities = 18/33 (54%), Positives = 28/33 (84%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQ 457
+VFFSI +DIKQRL+++D+K EP +I+I ++ Q
Sbjct: 168 EVFFSIGKDIKQRLSESDSKTEPQSIRINQSDQ 200
>gi|1370196|emb|CAA98175.1| (Z73947) RAB8D [Lotus japonicus]
Length = 214
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 214
0 50 100 150 200
Plus Strand HSPs:
Score = 653 (229.9 bits), Expect = 3.9e-63, P = 3.9e-63
Identities = 129/163 (79%), Positives = 140/163 (85%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKR+KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW
Sbjct: 50 IDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE
Sbjct: 110 LRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492
F ++ K + H+ + +QD + AG+AA KS+C
Sbjct: 170 FFSIARDIKQRLADTDHKAEPTTLKINQDSAAGAGEAANKSSC 212
>gi|1362065|pir||S57462 GTP-binding protein GTP11 - garden pea
>gi|871506|emb|CAA90081.1| (Z49901) small GTP-binding protein
[Pisum sativum]
Length = 215
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _______________________________________
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31
__________________
Plus Strand HSPs:
Score = 646 (227.4 bits), Expect = 2.1e-62, P = 2.1e-62
Identities = 133/164 (81%), Positives = 140/164 (85%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW
Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVEE
Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEV 169
Query: 364 FLLNSKRYKTKAG*H*HQG--RTINNQNHQDQSGKAGQAAQKSAC 492
F ++ K + + +TI N QD + GQAA KSAC
Sbjct: 170 FFSIARDIKQRLADTDSKSEPQTIKI-NQQDPAANGGQAATKSAC 213
Score = 122 (42.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/30 (80%), Positives = 28/30 (93%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITK 448
+VFFSIARDIKQRLADTD+K+EP TIKI +
Sbjct: 168 EVFFSIARDIKQRLADTDSKSEPQTIKINQ 197
>gi|1362067|pir||S57478 GTP-binding protein GTP13 - garden pea
>gi|871508|emb|CAA90082.1| (Z49902) small GTP-binding protein
[Pisum sativum]
Length = 215
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _______________________________________
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31
__________________
Plus Strand HSPs:
Score = 646 (227.4 bits), Expect = 2.1e-62, P = 2.1e-62
Identities = 133/164 (81%), Positives = 140/164 (85%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW
Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVEE
Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEV 169
Query: 364 FLLNSKRYKTKAG*H*HQG--RTINNQNHQDQSGKAGQAAQKSAC 492
F ++ K + + +TI N QD + GQAA KSAC
Sbjct: 170 FFSIARDIKQRLADTDSRSEPQTIKI-NQQDPAANGGQAATKSAC 213
Score = 119 (41.9 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 23/30 (76%), Positives = 28/30 (93%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITK 448
+VFFSIARDIKQRLADTD+++EP TIKI +
Sbjct: 168 EVFFSIARDIKQRLADTDSRSEPQTIKINQ 197
>gi|1370190|emb|CAA98172.1| (Z73944) RAB8A [Lotus japonicus]
Length = 216
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
Plus Strand HSPs:
Score = 646 (227.4 bits), Expect = 2.1e-62, P = 2.1e-62
Identities = 132/164 (80%), Positives = 137/164 (83%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNI+NW
Sbjct: 51 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIKNW 110
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE
Sbjct: 111 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 170
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQ-NHQDQSGKAGQAAQKSAC 492
F ++ K + + Q N D S GQAAQKS C
Sbjct: 171 FFSIARDIKQRLADTDSRAEPQTIQINQPDASASGGQAAQKSCC 214
>gi|114088|sp|P28186|ARA3_ARATH RAS-RELATED PROTEIN ARA-3
>gi|320560|pir||JS0640 GTP-binding protein ara-3 - Arabidopsis
thaliana >gi|217837|dbj|BAA00830.1| (D01025) small GTP-binding
protein [Arabidopsis thaliana] >gi|7798994|emb|CAB90933.1|
(AL355775) GTP-binding protein ara-3 [Arabidopsis thaliana]
Length = 216
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): _______________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 12..158
Entrez np-binding site: GTP (BY SIMILARITY). 22..29
Entrez np-binding site: GTP (BY SIMILARITY). 70..74
Entrez np-binding site: GTP (BY SIMILARITY). 128..131
Entrez lipid-binding site: GERANYL-GERANYL (BY 213
Entrez lipid-binding site: GERANYL-GERANYL (BY 214
PFAM ras: Ras family 17..216
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 16..37
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 39..55
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 57..79
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 119..132
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 155..177
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 14..179
PRODOM PD005513: 181..214
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31
__________________
Plus Strand HSPs:
Score = 641 (225.6 bits), Expect = 7.2e-62, P = 7.2e-62
Identities = 131/164 (79%), Positives = 138/164 (84%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW
Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEE
Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEV 169
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQ-DQSGKAGQAAQKSAC 492
F + K + + + Q DQ+ AGQA QKSAC
Sbjct: 170 FFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGAGQATQKSAC 213
Score = 127 (44.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/33 (72%), Positives = 31/33 (93%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQ 457
+VFFSI RDIKQRL+DTD++AEP+TIKI++T Q
Sbjct: 168 EVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQ 200
>gi|1362064|pir||S57474 GTP-binding protein - garden pea
>gi|871514|emb|CAA90079.1| (Z49899) small G protein [Pisum sativum]
Length = 215
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _______________________________________
Annotated Domains: ___
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29
__________________
Plus Strand HSPs:
Score = 639 (224.9 bits), Expect = 1.2e-61, P = 1.2e-61
Identities = 132/164 (80%), Positives = 139/164 (84%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGK IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW
Sbjct: 50 IDFKIRTIELDGKPIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVEE
Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEV 169
Query: 364 FLLNSKRYKTKAG*H*HQG--RTINNQNHQDQSGKAGQAAQKSAC 492
F ++ K + + +TI N QD + GQAA KSAC
Sbjct: 170 FFSIARDIKQRLADTDSRSEPQTIKI-NQQDPAANGGQAATKSAC 213
Score = 119 (41.9 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 23/30 (76%), Positives = 28/30 (93%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITK 448
+VFFSIARDIKQRLADTD+++EP TIKI +
Sbjct: 168 EVFFSIARDIKQRLADTDSRSEPQTIKINQ 197
>gi|1370198|emb|CAA98176.1| (Z73948) RAB8E [Lotus japonicus]
Length = 215
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
Plus Strand HSPs:
Score = 635 (223.5 bits), Expect = 3.1e-61, P = 3.1e-61
Identities = 132/164 (80%), Positives = 140/164 (85%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNI+NW
Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
I NIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE
Sbjct: 110 IHNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQ---NHQDQSGKAGQAAQKSAC 492
F ++ K + +T N QD+ G AG+AAQKSAC
Sbjct: 170 FFSIARDIKQRLA-DTDSSKTEPTGIKINPQDK-GSAGEAAQKSAC 213
Score = 105 (37.0 bits), Expect = 0.0034, P = 0.0034
Identities = 23/29 (79%), Positives = 26/29 (89%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDT-KAEPSTIKI 442
+VFFSIARDIKQRLADTD+ K EP+ IKI
Sbjct: 168 EVFFSIARDIKQRLADTDSSKTEPTGIKI 196
>gi|1370192|emb|CAA98173.1| (Z73945) RAB8B [Lotus japonicus]
Length = 187
Frame 1 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | | 187
0 50 100 150
Plus Strand HSPs:
Score = 633 (222.8 bits), Expect = 5.1e-61, P = 5.1e-61
Identities = 128/164 (78%), Positives = 138/164 (84%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNI+NW
Sbjct: 21 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNW 80
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV+E
Sbjct: 81 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEV 140
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQ-NHQDQSGKAGQAAQKSAC 492
F ++ K + + + + N DQ + QAA KSAC
Sbjct: 141 FFSIARDIKQRVADNDSKAEPQTLKINQPDQGAGSAQAAPKSAC 184
>gi|5669640|gb|AAD46405.1|AF096249_1 (AF096249) ethylene-responsive small
GTP-binding protein [Lycopersicon esculentum]
Length = 216
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
Plus Strand HSPs:
Score = 630 (221.8 bits), Expect = 1.1e-60, P = 1.1e-60
Identities = 127/164 (77%), Positives = 139/164 (84%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW
Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE+
Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEQV 169
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAG-QAAQKSAC 492
F ++ K + + + +Q ++G G Q +QKSAC
Sbjct: 170 FFSIARDIKQRLADTDSKAEPSTLKINQPEAGAGGSQTSQKSAC 213
>gi|1362066|pir||S57471 GTP-binding protein GTP6 - garden pea
>gi|871510|emb|CAA90080.1| (Z49900) small GTP-binding protein
[Pisum sativum]
Length = 216
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): _______________________________________
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31
__________________
Plus Strand HSPs:
Score = 628 (221.1 bits), Expect = 1.7e-60, P = 1.7e-60
Identities = 128/164 (78%), Positives = 139/164 (84%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNI+NW
Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NV+E
Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEV 169
Query: 364 FLLNSKRYKTKAG*H*H--QGRTINNQNHQDQSGKAGQAAQKSAC 492
F ++ K + + +T+ N DQ + QA QKSAC
Sbjct: 170 FFSIARDIKQRLAETDSKTEPQTLKI-NQPDQGAGSAQATQKSAC 213
Score = 119 (41.9 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 23/33 (69%), Positives = 28/33 (84%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQ 457
+VFFSIARDIKQRLA+TD+K EP T+KI + Q
Sbjct: 168 EVFFSIARDIKQRLAETDSKTEPQTLKINQPDQ 200
>gi|2808638|emb|CAA04701.1| (AJ001367) small GTP-binding protein [Daucus
carota]
Length = 216
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
Plus Strand HSPs:
Score = 628 (221.1 bits), Expect = 1.7e-60, P = 1.7e-60
Identities = 129/164 (78%), Positives = 138/164 (84%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIE+DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW
Sbjct: 50 IDFKIRTIEMDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFE SAKTN+NVEE
Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFEASAKTNMNVEEV 169
Query: 364 FLLNSKRYKTKAG*H*H--QGRTINNQNHQDQSGKAGQAAQKSAC 492
F +K K + + +TI N Q+Q A+QKSAC
Sbjct: 170 FFSIAKDIKQRLAETDSKTEPQTIKI-NQQEQGAGTSAASQKSAC 213
Score = 118 (41.5 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 23/33 (69%), Positives = 28/33 (84%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQ 457
+VFFSIA+DIKQRLA+TD+K EP TIKI + Q
Sbjct: 168 EVFFSIAKDIKQRLAETDSKTEPQTIKINQQEQ 200
>gi|2289961|gb|AAB65088.1| (U82434) AtRAB8 [Arabidopsis thaliana]
>gi|6729512|emb|CAB67668.1| (AL132966) GTPase AtRAB8 [Arabidopsis
thaliana]
Length = 216
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
Plus Strand HSPs:
Score = 627 (220.7 bits), Expect = 2.2e-60, P = 2.2e-60
Identities = 130/164 (79%), Positives = 137/164 (83%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW
Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASD+VNKILVGNKADMDESKRAVP SKGQALADEYG+KFFETSAKTNLNVEE
Sbjct: 110 IRNIEQHASDSVNKILVGNKADMDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEV 169
Query: 364 FLLNSKRYKTKAG*H*HQG--RTINNQNHQDQSGKAGQAAQKSAC 492
F +K K + + +TI N DQ QA QKSAC
Sbjct: 170 FFSIAKDIKQRLADTDARAEPQTIKI-NQSDQGAGTSQATQKSAC 213
Score = 124 (43.7 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 24/33 (72%), Positives = 29/33 (87%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQ 457
+VFFSIA+DIKQRLADTD +AEP TIKI ++ Q
Sbjct: 168 EVFFSIAKDIKQRLADTDARAEPQTIKINQSDQ 200
>gi|3024527|sp|Q39433|RAB1_BETVU RAS-RELATED PROTEIN RAB1BV
>gi|7438390|pir||T14565 GTP-binding protein - beet
>gi|974776|emb|CAA89021.1| (Z49152) small G protein [Beta vulgaris]
Length = 215
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _______________________________________
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
__________________
Annotated Domains:
Entrez np-binding site: GTP (BY SIMILARITY). 22..29
Entrez np-binding site: GTP (BY SIMILARITY). 70..74
Entrez np-binding site: GTP (BY SIMILARITY). 128..131
Entrez lipid-binding site: GERANYL-GERANYL (BY 212
Entrez lipid-binding site: GERANYL-GERANYL (BY 213
PFAM ras: Ras family 17..215
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 16..37
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 39..55
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 57..79
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 119..132
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 155..177
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 14..179
PRODOM PD047433: RAB1_BETVU 181..214
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31
__________________
Plus Strand HSPs:
Score = 623 (219.3 bits), Expect = 5.8e-60, P = 5.8e-60
Identities = 130/163 (79%), Positives = 137/163 (84%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW
Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEE
Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEV 169
Query: 364 FLLNSKRYKTKAG*H*--HQGRTINNQNHQDQSGKAGQAAQKSAC 492
F ++ K + + + DQSG QAA KSAC
Sbjct: 170 FFSIARDIKQRLADSDTRQEAQPSITIKPADQSGN--QAAAKSAC 212
Score = 98 (34.5 bits), Expect = 0.028, P = 0.027
Identities = 23/30 (76%), Positives = 27/30 (90%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTK--AEPS-TIK 439
+VFFSIARDIKQRLAD+DT+ A+PS TIK
Sbjct: 168 EVFFSIARDIKQRLADSDTRQEAQPSITIK 197
>gi|7378637|emb|CAB83313.1| (AL162751) GTP-binding protein-like [Arabidopsis
thaliana]
Length = 216
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
Plus Strand HSPs:
Score = 608 (214.0 bits), Expect = 2.3e-58, P = 2.3e-58
Identities = 128/163 (78%), Positives = 139/163 (85%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRT+ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW
Sbjct: 50 IDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
++NIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE
Sbjct: 110 MKNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVENV 169
Query: 364 FLLNSKRYK-------TKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492
F+ +K K TKA QG I Q+ + + A+KSAC
Sbjct: 170 FMSIAKDIKQRLTETDTKAE---PQGIKITKQD----TAASSSTAEKSAC 212
Score = 113 (39.8 bits), Expect = 0.00029, P = 0.00029
Identities = 23/29 (79%), Positives = 25/29 (86%), Frame = +2
Query: 362 VFFSIARDIKQRLADTDTKAEPSTIKITK 448
VF SIA+DIKQRL +TDTKAEP IKITK
Sbjct: 169 VFMSIAKDIKQRLTETDTKAEPQGIKITK 197
>gi|6681329|gb|AAF23246.1|AC015985_4 (AC015985) putative Ras-like GTP-binding
protein [Arabidopsis thaliana]
Length = 218
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | | 218
0 50 100 150 200
Plus Strand HSPs:
Score = 602 (211.9 bits), Expect = 9.8e-58, P = 9.8e-58
Identities = 128/165 (77%), Positives = 138/165 (83%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRT+ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNW
Sbjct: 50 IDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
++NIEQHASD+VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN NVE+
Sbjct: 110 MKNIEQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNQNVEQV 169
Query: 364 FLLNSKRYK-------TKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492
FL +K K TKA QG I Q+ S + +KSAC
Sbjct: 170 FLSIAKDIKQRLTESDTKAE---PQGIKITKQDANKASSSSTN--EKSAC 214
Score = 113 (39.8 bits), Expect = 0.00030, P = 0.00030
Identities = 23/35 (65%), Positives = 27/35 (77%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQEK 463
+VF SIA+DIKQRL ++DTKAEP IKITK K
Sbjct: 168 QVFLSIAKDIKQRLTESDTKAEPQGIKITKQDANK 202
>gi|1370194|emb|CAA98174.1| (Z73946) RAB8C [Lotus japonicus]
Length = 212
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 212
0 50 100 150 200
Plus Strand HSPs:
Score = 601 (211.6 bits), Expect = 1.2e-57, P = 1.2e-57
Identities = 128/163 (78%), Positives = 134/163 (82%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQER RTITTAYYRGA GILLVYDVTDE+SFNNIRNW
Sbjct: 50 IDFKIRTIELDGKRIKLQIWDTAGQERVRTITTAYYRGAKGILLVYDVTDESSFNNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE
Sbjct: 110 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169
Query: 364 FLLNSKRYKTKAG*H*HQG--RTINNQNHQDQSGKAGQAAQKSAC 492
F ++ K + + +TI N DQ AAQ S C
Sbjct: 170 FFSIARDIKQRLADTDSKAEPQTIKI-NQPDQPA----AAQNSTC 209
Score = 129 (45.4 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 26/33 (78%), Positives = 29/33 (87%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQ 457
+VFFSIARDIKQRLADTD+KAEP TIKI + Q
Sbjct: 168 EVFFSIARDIKQRLADTDSKAEPQTIKINQPDQ 200
>gi|134228|sp|P20790|SAS1_DICDI GTP-BINDING PROTEIN SAS1 >gi|102241|pir||A34716
GTP-binding protein SAS1 - slime mold (Dictyostelium discoideum)
>gi|167877|gb|AAA33249.1| (M34457) GTP-binding protein (SAS2)
[Dictyostelium discoideum]
Length = 208
Frame 2 hits (HSPs): _______
Frame 1 hits (HSPs): ________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 12..157
Entrez np-binding site: GTP (BY SIMILARITY). 22..29
Entrez np-binding site: GTP (BY SIMILARITY). 70..74
Entrez np-binding site: GTP (BY SIMILARITY). 128..131
Entrez lipid-binding site: PALMITATE (BY SIMILA 207
Entrez lipid-binding site: PALMITATE (BY SIMILA 208
PFAM ras: Ras family 17..208
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 16..37
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 39..55
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 57..79
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 119..132
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 154..176
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 14..178
PRODOM PD046143: SAS1_DICDI 180..207
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31
__________________
Plus Strand HSPs:
Score = 524 (184.5 bits), Expect = 1.5e-53, Sum P(2) = 1.5e-53
Identities = 101/131 (77%), Positives = 117/131 (89%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNW
Sbjct: 50 IDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHA+D+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE+
Sbjct: 110 IRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEA 168
Query: 364 FLLNSKRYKTK 396
F+ +K K +
Sbjct: 169 FISLAKDIKKR 179
Score = 56 (19.7 bits), Expect = 1.5e-53, Sum P(2) = 1.5e-53
Identities = 10/27 (37%), Positives = 19/27 (70%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIK 439
+ F S+A+DIK+R+ DT + +P ++
Sbjct: 167 EAFISLAKDIKKRMIDTPNE-QPQVVQ 192
>gi|134236|sp|P20791|SAS2_DICDI GTP-BINDING PROTEIN SAS2 >gi|102242|pir||B34716
GTP-binding protein SAS2 - slime mold (Dictyostelium discoideum)
>gi|167875|gb|AAA33248.1| (M34456) GTP-binding protein (SAS1)
[Dictyostelium discoideum]
Length = 203
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | || 203
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 12..157
Entrez np-binding site: GTP (BY SIMILARITY). 22..29
Entrez np-binding site: GTP (BY SIMILARITY). 70..74
Entrez np-binding site: GTP (BY SIMILARITY). 128..131
Entrez lipid-binding site: PALMITATE (BY SIMILA 202
Entrez lipid-binding site: PALMITATE (BY SIMILA 203
PFAM ras: Ras family 17..194
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 16..37
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 39..55
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 57..79
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 119..132
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 154..176
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 14..178
PRODOM PD045188: SAS2_DICDI 180..202
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 22..29
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 18..31
__________________
Plus Strand HSPs:
Score = 520 (183.0 bits), Expect = 6.4e-53, Sum P(2) = 6.4e-53
Identities = 101/131 (77%), Positives = 117/131 (89%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNW
Sbjct: 50 IDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNW 109
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIEQHASD+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE+
Sbjct: 110 IRNIEQHASDSVNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEA 168
Query: 364 FLLNSKRYKTK 396
F+ +K K +
Sbjct: 169 FIGLAKDIKKR 179
Score = 54 (19.0 bits), Expect = 6.4e-53, Sum P(2) = 6.4e-53
Identities = 12/34 (35%), Positives = 21/34 (61%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTKAEPSTIKITKTSQE 460
+ F +A+DIK+R+ DT + TI IT +++
Sbjct: 167 EAFIGLAKDIKKRMIDTPNDPD-HTICITPNNKK 199
>gi|4885483 ref|NP_005361.1| mel transforming oncogene; RAB8 homolog;
ras-associated protein RAB8 >gi|234746|gb|AAB19681.1| (S53268)
MEL=RAS-related [human, Peptide, 206 aa] [Homo sapiens]
Length = 206
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
Plus Strand HSPs:
Score = 481 (169.3 bits), Expect = 1.3e-48, Sum P(2) = 1.3e-48
Identities = 92/131 (70%), Positives = 111/131 (84%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNW
Sbjct: 43 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK N+NVE +
Sbjct: 103 IRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENA 161
Query: 364 FLLNSKRYKTK 396
F ++ K K
Sbjct: 162 FFTLARDIKAK 172
Score = 52 (18.3 bits), Expect = 1.3e-48, Sum P(2) = 1.3e-48
Identities = 15/36 (41%), Positives = 23/36 (63%), Frame = +2
Query: 365 FFSIARDIKQRLADTDTKAE-PST---IKITKTSQEK 463
FF++ARDIK ++ D KA P + +KIT Q++
Sbjct: 162 FFTLARDIKAKM-DKKWKATAPGSNQGVKITPDQQKR 197
>gi|1710002|sp|P55258|RAB8_MOUSE RAS-RELATED PROTEIN RAB-8 (ONCOGENE C-MEL)
>gi|2118463|pir||I78851 GTP-binding protein MEL - mouse
>gi|234748|gb|AAB19682.1| (S53270) MEL=RAS-related [mice, Peptide,
206 aa] [Mus sp.]
Length = 206
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
__________________
Annotated Domains:
Entrez np-binding site: GTP (BY SIMILARITY). 15..22
Entrez np-binding site: GTP (BY SIMILARITY). 63..67
Entrez np-binding site: GTP (BY SIMILARITY). 121..124
Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 37..45
Entrez lipid-binding site: GERANYL-GERANYL (BY 203
PFAM ras: Ras family 10..206
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 9..30
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 32..48
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 50..72
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 112..125
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 147..169
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..171
PRODOM PD047184: RAB8_MOUSE 173..205
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24
__________________
Plus Strand HSPs:
Score = 481 (169.3 bits), Expect = 2.1e-48, Sum P(2) = 2.1e-48
Identities = 92/131 (70%), Positives = 111/131 (84%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNW
Sbjct: 43 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK N+NVE +
Sbjct: 103 IRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENA 161
Query: 364 FLLNSKRYKTK 396
F ++ K K
Sbjct: 162 FFTLARDIKAK 172
Score = 50 (17.6 bits), Expect = 2.1e-48, Sum P(2) = 2.1e-48
Identities = 14/36 (38%), Positives = 23/36 (63%), Frame = +2
Query: 365 FFSIARDIKQRLADTDTKAEPST----IKITKTSQEK 463
FF++ARDIK ++ D + KA + +KIT Q++
Sbjct: 162 FFTLARDIKAKM-DKNWKATAAGSSHGVKITVEQQKR 197
>gi|549809|sp|P36861|YPT2_VOLCA GTP-BINDING PROTEIN YPTV2
>gi|486944|pir||S36365 GTP-binding protein yptV2 - Volvox carteri
>gi|409162|gb|AAA34251.1| (L08128) GTP-binding protein [Volvox
carteri]
Length = 217
Frame 1 hits (HSPs): ____________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | 217
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 10..156
Entrez np-binding site: GTP (BY SIMILARITY). 20..27
Entrez np-binding site: GTP (BY SIMILARITY). 68..72
Entrez np-binding site: GTP (BY SIMILARITY). 126..129
Entrez Domain: EFFECTOR REGION (PROBABLE). 42..50
Entrez lipid-binding site: GERANYL-GERANYL (BY 215
Entrez lipid-binding site: GERANYL-GERANYL (BY 216
PFAM ras: Ras family 15..217
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 14..35
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 37..53
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 55..77
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 117..130
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 153..175
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 13..177
PRODOM PD046366: YPT2_VOLCA 179..216
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 20..27
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 16..29
__________________
Plus Strand HSPs:
Score = 513 (180.6 bits), Expect = 2.6e-48, P = 2.6e-48
Identities = 99/156 (63%), Positives = 122/156 (78%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKI+ +++DGK +KLQIWDTAGQERFRTIT+AYYRGA GI+LVYD+TDEASFNN+RNW
Sbjct: 48 IDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNW 107
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+RNIEQHASDNVNKILVGNK D+ E KR V ++GQALADE+G +F+ETSAK N++VEE+
Sbjct: 108 MRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEA 167
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQ 471
F+ +K + +G N Q Q Q A Q
Sbjct: 168 FIAVAKDVLARM-----EGEHANQQLLQQQQLSAAQ 198
>gi|141305|sp|P17609|YPT2_SCHPO YPT1-RELATED PROTEIN 2 >gi|101034|pir||S12790
GTP-binding protein ypt2 - fission yeast (Schizosaccharomyces
pombe) >gi|5144|emb|CAA36707.1| (X52469) ypt2 gene product (AA
1-200) [Schizosaccharomyces pombe] >gi|5150|emb|CAA37045.1|
(X52864) ypt-related protein (AA 1-200) [Schizosaccharomyces pombe]
>gi|2414662|emb|CAB16405.1| (Z99262) ypt1-related protein 2
[Schizosaccharomyces pombe]
Length = 200
Frame 2 hits (HSPs): _____
Frame 1 hits (HSPs): _________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 6..151
Entrez np-binding site: GTP (BY SIMILARITY). 16..23
Entrez np-binding site: GTP (BY SIMILARITY). 64..68
Entrez np-binding site: GTP (BY SIMILARITY). 122..125
Entrez Domain: EFFECTOR REGION (PROBABLE). 38..46
Entrez lipid-binding site: GERANYL-GERANYL (BY 199
Entrez lipid-binding site: GERANYL-GERANYL (BY 200
PFAM ras: Ras family 11..200
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 10..31
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 33..49
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 51..73
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 113..126
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 148..170
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 8..173
PRODOM PD045608: YPT2_SCHPO 175..199
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 16..23
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 12..25
__________________
Plus Strand HSPs:
Score = 485 (170.7 bits), Expect = 3.5e-48, Sum P(2) = 3.5e-48
Identities = 93/129 (72%), Positives = 108/129 (83%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W
Sbjct: 44 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTW 103
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
N+EQHAS+NV KIL+GNK D E +R V +GQALADE G+KF E SAKTN+NV+E+
Sbjct: 104 FSNVEQHASENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEA 162
Query: 364 FLLNSKRYK 390
F ++ K
Sbjct: 163 FFTLAREIK 171
Score = 44 (15.5 bits), Expect = 3.5e-48, Sum P(2) = 3.5e-48
Identities = 7/20 (35%), Positives = 15/20 (75%), Frame = +2
Query: 359 KVFFSIARDIKQRLADTDTK 418
+ FF++AR+IK++ D + +
Sbjct: 161 EAFFTLAREIKKQKIDAENE 180
>gi|131798|sp|P24407|RAB8_HUMAN RAS-RELATED PROTEIN RAB-8 (ONCOGENE C-MEL)
>gi|108113|pir||B36364 GTP-binding protein rab8 - dog
>gi|539607|pir||B49647 GTP-binding protein rab8 - human
>gi|452318|emb|CAA40065.1| (X56741) rab8 small GTP binding protein
[Homo sapiens] >gi|6006436|emb|CAB56776.1| (X56385) rab8 [Canis
familiaris] >gi|740474|prf||2005309A rab8 GTPase [Homo sapiens]
Length = 207
Frame 2 hits (HSPs): __________
Frame 1 hits (HSPs): ________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 5..150
Entrez np-binding site: GTP (BY SIMILARITY). 15..22
Entrez np-binding site: GTP (BY SIMILARITY). 63..67
Entrez np-binding site: GTP (BY SIMILARITY). 121..124
Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 37..45
Entrez lipid-binding site: GERANYL-GERANYL (BY 204
PFAM ras: Ras family 10..207
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 9..30
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 32..48
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 50..72
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 112..125
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 147..169
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..171
PRODOM PD047435: RAB8_HUMAN 173..206
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24
__________________
Plus Strand HSPs:
Score = 481 (169.3 bits), Expect = 3.5e-48, Sum P(2) = 3.5e-48
Identities = 92/131 (70%), Positives = 111/131 (84%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNW
Sbjct: 43 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK N+NVE +
Sbjct: 103 IRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENA 161
Query: 364 FLLNSKRYKTK 396
F ++ K K
Sbjct: 162 FFTLARDIKAK 172
Score = 48 (16.9 bits), Expect = 3.5e-48, Sum P(2) = 3.5e-48
Identities = 12/37 (32%), Positives = 20/37 (54%), Frame = +2
Query: 365 FFSIARDIK----QRLADTDTKAEPSTIKITKTSQEK 463
FF++ARDIK ++L + +KIT Q++
Sbjct: 162 FFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKR 198
>gi|2500066|sp|P70550|RB8B_RAT RAS-RELATED PROTEIN RAB-8B
>gi|1314637|gb|AAA99782.1| (U53475) GTPase Rab8b [Rattus
norvegicus]
Length = 207
Frame 1 hits (HSPs): _______________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
__________________
Annotated Domains:
Entrez np-binding site: GTP (BY SIMILARITY). 15..22
Entrez np-binding site: GTP (BY SIMILARITY). 63..67
Entrez np-binding site: GTP (BY SIMILARITY). 121..124
Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 37..45
Entrez lipid-binding site: GERANYL-GERANYL (BY 204
PFAM ras: Ras family 10..207
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 9..30
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 32..48
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 50..72
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 112..125
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 147..169
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..171
PRODOM PD047437: RB8B_RAT 173..206
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24
__________________
Plus Strand HSPs:
Score = 480 (169.0 bits), Expect = 8.3e-45, P = 8.3e-45
Identities = 97/164 (59%), Positives = 123/164 (75%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NW
Sbjct: 43 IDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIE+HAS +V ++++GNK DM++ KR V +G+ LA +YGIKF ETSAK++ NVEE+
Sbjct: 103 IRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEA 161
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSG--KAGQAAQKSACF 495
F ++ TK R +N+ N G K ++ K F
Sbjct: 162 FFTLARDIMTKLN------RKMNDSNSSGAGGPVKITESRSKKTSF 201
>gi|131848|sp|P22128|RAB8_DISOM RAS-RELATED PROTEIN RAB-8 (ORA2)
>gi|213119|gb|AAA49232.1| (M38391) GTP-binding protein [Discopyge
ommata]
Length = 210
Frame 1 hits (HSPs): _______________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
__________________
Annotated Domains:
Entrez np-binding site: GTP (BY SIMILARITY). 15..22
Entrez np-binding site: GTP (BY SIMILARITY). 63..67
Entrez np-binding site: GTP (BY SIMILARITY). 121..124
Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 37..45
Entrez lipid-binding site: GERANYL-GERANYL (BY 207
PFAM ras: Ras family 10..210
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 9..30
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 32..48
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 50..72
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 112..125
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 147..169
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..171
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24
__________________
Plus Strand HSPs:
Score = 477 (167.9 bits), Expect = 1.7e-44, P = 1.7e-44
Identities = 89/131 (67%), Positives = 113/131 (86%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRT+ELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+ VYD+T+E SF+NI+NW
Sbjct: 43 IDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIE+HAS +V ++++GNK DM+E KR V +G+ LA +YGIKF ETSAK+++NVEE+
Sbjct: 103 IRNIEEHASSDVERMILGNKCDMNE-KRQVSKERGEKLAIDYGIKFLETSAKSSINVEEA 161
Query: 364 FLLNSKRYKTK 396
F+ ++ TK
Sbjct: 162 FITLARDIMTK 172
>gi|7498104|pir||T33855 hypothetical protein D1037.4 - Caenorhabditis elegans
>gi|3893875|gb|AAC78494.1| (AF106592) contains similarity to the
RAS family (Pfam: PF00071, score=220.5, E=2.4e-62, N=1)
[Caenorhabditis elegans]
Length = 224
Frame 1 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | 224
0 50 100 150 200
Plus Strand HSPs:
Score = 476 (167.6 bits), Expect = 2.2e-44, P = 2.2e-44
Identities = 88/131 (67%), Positives = 111/131 (84%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF NI+NW
Sbjct: 43 IDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIE+HA+ +V ++++GNK D++E +R V +G+ LA EYG KF ETSAK NLN++E+
Sbjct: 103 IRNIEEHAASDVERMIIGNKCDIEE-RREVSRDRGEQLAIEYGTKFLETSAKANLNIDEA 161
Query: 364 FLLNSKRYKTK 396
F ++ K+K
Sbjct: 162 FFTLARDIKSK 172
>gi|7706563 ref|NP_057614.1| RAB-8b protein >gi|7209512|dbj|BAA92249.1|
(AB038995) RAB-8b protein [Homo sapiens]
Length = 207
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
Plus Strand HSPs:
Score = 476 (167.6 bits), Expect = 2.2e-44, P = 2.2e-44
Identities = 90/131 (68%), Positives = 112/131 (85%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NW
Sbjct: 43 IDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIE+HAS +V ++++GNK DM++ KR V +G+ LA +YGIKF ETSAK++ NVEE+
Sbjct: 103 IRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSANVEEA 161
Query: 364 FLLNSKRYKTK 396
F ++ TK
Sbjct: 162 FFTLARDIMTK 172
>gi|103724|pir||B38625 GTP-binding protein ora2 - electric ray (Discopyge
ommata)
Length = 209
Frame 1 hits (HSPs): _______________________________
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | | | 209
0 50 100 150 200
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24
__________________
Plus Strand HSPs:
Score = 468 (164.7 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 89/131 (67%), Positives = 113/131 (86%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRT+ELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+ VYD+T+E SF+NI+NW
Sbjct: 43 IDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIE+HAS +V ++++GNK DM+E KR V +G+ LA +YGIKF ETSAK+++NVEE+
Sbjct: 103 IRNIEEHASSDVERMILGNKCDMNE-KRQVSKERGEKLAIDYGIKF-ETSAKSSINVEEA 160
Query: 364 FLLNSKRYKTK 396
F+ ++ TK
Sbjct: 161 FITLARDIMTK 171
>gi|2313045|dbj|BAA21711.1| (D84347) rab8 [Drosophila melanogaster]
>gi|7293732|gb|AAF49101.1| (AE003515) Rab8 gene product [Drosophila
melanogaster]
Length = 207
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
Plus Strand HSPs:
Score = 463 (163.0 bits), Expect = 5.2e-43, P = 5.2e-43
Identities = 90/131 (68%), Positives = 108/131 (82%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTIELD K+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T E SF NI+NW
Sbjct: 43 IDFKIRTIELDNKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
IRNIE++AS +V K+L+GNK ++ + KR V +G+ LA EYGIKF ETSAK ++NVEE+
Sbjct: 103 IRNIEENASADVEKMLLGNKCELTD-KRQVSKERGEQLAIEYGIKFMETSAKASINVEEA 161
Query: 364 FLLNSKRYKTK 396
FL + K K
Sbjct: 162 FLTLASDIKAK 172
>gi|1173333|sp|P41924|RYL1_YARLI RAS-LIKE GTP-BINDING PROTEIN RYL1
>gi|173257|gb|AAA35245.1| (L06969) ras-like protein [Yarrowia
lipolytica] >gi|1097101|prf||2113252A Rab protein [Yarrowia
lipolytica]
Length = 203
Frame 1 hits (HSPs): ______________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | || 203
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 8..153
Entrez np-binding site: GTP (BY SIMILARITY). 18..25
Entrez np-binding site: GTP (BY SIMILARITY). 66..70
Entrez np-binding site: GTP (BY SIMILARITY). 124..127
Entrez Domain: EFFECTOR REGION (PROBABLE). 40..48
Entrez lipid-binding site: GERANYL-GERANYL (BY 202
Entrez lipid-binding site: GERANYL-GERANYL (BY 203
PFAM ras: Ras family 13..203
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 12..33
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 35..51
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 53..75
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 115..128
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 150..172
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 11..172
PRODOM PD046354: RYL1_YARLI 174..202
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 18..25
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 14..27
__________________
Plus Strand HSPs:
Score = 461 (162.3 bits), Expect = 8.5e-43, P = 8.5e-43
Identities = 86/121 (71%), Positives = 103/121 (85%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTI++ +R+KLQ+WDTAGQERFRTITTAYYRGAMGILLVYDVTDE SFNNI NW
Sbjct: 46 IDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENW 105
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+N++ +A++ V ILVGNK D+DE KR V T +GQALAD++GI F E S+KTN+NVEE
Sbjct: 106 YQNVQSYANEGVELILVGNKCDLDE-KRVVSTEQGQALADKFGIPFLEASSKTNINVEEC 164
Query: 364 F 366
F
Sbjct: 165 F 165
>gi|2133238|pir||S51495 GTP-binding protein RYL1 - yeast (Yarrowia lipolytica)
Length = 203
Frame 1 hits (HSPs): ______________________________
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | || 203
0 50 100 150 200
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 18..25
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 14..27
__________________
Plus Strand HSPs:
Score = 460 (161.9 bits), Expect = 1.1e-42, P = 1.1e-42
Identities = 86/121 (71%), Positives = 103/121 (85%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRTI++ +R+KLQ+WDTAGQERFRTITTAYYRGAMGILLVYDVTDE SFNNI NW
Sbjct: 46 IDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENW 105
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+N++ +A++ V ILVGNK D+DE KR V T +GQALAD++GI F E S+KTN+NVEE
Sbjct: 106 YQNVQTYANEGVELILVGNKCDLDE-KRVVSTEQGQALADKFGIPFLEASSKTNINVEEC 164
Query: 364 F 366
F
Sbjct: 165 F 165
>gi|131804|sp|P24409|RB10_CANFA RAS-RELATED PROTEIN RAB-10
>gi|108104|pir||D36364 GTP-binding protein rab10 - dog
>gi|915|emb|CAA39798.1| (X56387) rab10 [Canis familiaris]
Length = 200
Frame 1 hits (HSPs): ________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 6..151
Entrez np-binding site: GTP (BY SIMILARITY). 16..23
Entrez np-binding site: GTP (BY SIMILARITY). 64..68
Entrez np-binding site: GTP (BY SIMILARITY). 122..125
Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 38..46
Entrez lipid-binding site: GERANYL-GERANYL (BY 199
Entrez lipid-binding site: GERANYL-GERANYL (BY 200
PFAM ras: Ras family 11..200
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 10..31
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 33..49
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 51..73
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 113..126
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 148..170
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 9..172
PRODOM PD025962: RB10(3) 174..199
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 16..23
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 12..25
__________________
Plus Strand HSPs:
Score = 458 (161.2 bits), Expect = 1.8e-42, P = 1.8e-42
Identities = 90/163 (55%), Positives = 120/163 (73%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+ SF NI W
Sbjct: 44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW 103
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+RNI++HA+++V ++L+GNK DMD+ KR VP KG+ +A E+GI+FFETSAK N+N+E++
Sbjct: 104 LRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKVNINIEKA 162
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492
FL ++ K + N++N SG G KS C
Sbjct: 163 FLTLAEDILRKT-----PVKEPNSENVDISSG-GGVTGWKSKC 199
>gi|420269|pir||B42148 GTP-binding protein rab10 - rat
Length = 200
Frame 1 hits (HSPs): ________________________________________
Annotated Domains: _____ _
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
__________________
Annotated Domains:
Entrez binding site: geranyl-geranyl (Cys) (cov 200
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 16..23
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 12..25
__________________
Plus Strand HSPs:
Score = 458 (161.2 bits), Expect = 1.8e-42, P = 1.8e-42
Identities = 90/163 (55%), Positives = 120/163 (73%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+ SF NI W
Sbjct: 44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW 103
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+RNI++HA+++V ++L+GNK DMD+ KR VP KG+ +A E+GI+FFETSAK N+N+E++
Sbjct: 104 LRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKA 162
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492
FL ++ K + N++N SG G KS C
Sbjct: 163 FLTLAEDILRKT-----PVKEPNSENVDISSG-GGVTGWKSKC 199
>gi|7705849 ref|NP_057215.1| ras-related GTP-binding protein >gi|7710086
ref|NP_057885.1|| RAB10, member RAS oncogene family
>gi|6093898|sp|O88386|RB10_MOUSE RAS-RELATED PROTEIN RAB-10
>gi|3406428|gb|AAC29313.1| (AF035646) Rab10 [Mus musculus]
>gi|5410328|gb|AAD43034.1| (AF106681) ras-related GTP-binding
protein [Homo sapiens]
Length = 200
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 458 (161.2 bits), Expect = 1.8e-42, P = 1.8e-42
Identities = 90/163 (55%), Positives = 120/163 (73%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+ SF NI W
Sbjct: 44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW 103
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+RNI++HA+++V ++L+GNK DMD+ KR VP KG+ +A E+GI+FFETSAK N+N+E++
Sbjct: 104 LRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKA 162
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492
FL ++ K + N++N SG G KS C
Sbjct: 163 FLTLAEDILRKT-----PVKEPNSENVDISSG-GGVTGWKSKC 199
>gi|541978|pir||S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava
bean >gi|303734|dbj|BAA02118.1| (D12550) GTP-binding protein [Pisum
sativum] >gi|452359|emb|CAA82707.1| (Z29590) guanine nucleotide
regulatory protein [Vicia faba] >gi|738942|prf||2001457K
GTP-binding protein [Pisum sativum] >gi|1098293|prf||2115367A small
GTP-binding protein [Vicia faba]
Length = 202
Frame 1 hits (HSPs): ________________________________________
Annotated Domains: _____________________________________
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 5..150
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24
__________________
Plus Strand HSPs:
Score = 448 (157.7 bits), Expect = 2.0e-41, P = 2.0e-41
Identities = 89/163 (54%), Positives = 113/163 (69%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W
Sbjct: 43 VDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+ I+++ASDNVNK+LVGNK D+ E+ RAVP +A ADE GI F ETSAK + NVE++
Sbjct: 103 LSEIDRYASDNVNKLLVGNKCDLTEN-RAVPYETAKAFADEIGIPFMETSAKDSTNVEQA 161
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492
F+ + K + + NN + QKS C
Sbjct: 162 FMAMASSIKERMA-----SQPTNNARPPTVQIRGQPVGQKSGC 199
>gi|730510|sp|P40392|RIC1_ORYSA RAS-RELATED PROTEIN RIC1 >gi|542150|pir||S38740
GTP-binding protein - rice >gi|432607|gb|AAB28535.1| (S66160)
ras-related GTP binding protein possessing GTPase activity=ric1
[Oryza sativa=rice, var. Yamahoushi, callus, Peptide, 202 aa]
Length = 202
Frame 1 hits (HSPs): ________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 5..150
Entrez np-binding site: GTP (BY SIMILARITY). 15..22
Entrez np-binding site: GTP (BY SIMILARITY). 63..67
Entrez np-binding site: GTP (BY SIMILARITY). 121..124
Entrez Domain: EFFECTOR REGION (PROBABLE). 37..45
Entrez lipid-binding site: PALMITATE (BY SIMILA 200
Entrez lipid-binding site: GERANYL-GERANYL (BY 201
PFAM ras: Ras family 10..202
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 9..30
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 32..48
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 50..72
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 112..125
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 147..169
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..171
PRODOM PD046353: RIC1_ORYSA 173..201
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 11..24
__________________
Plus Strand HSPs:
Score = 445 (156.6 bits), Expect = 4.2e-41, P = 4.2e-41
Identities = 90/163 (55%), Positives = 116/163 (71%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W
Sbjct: 43 VDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+ I+++AS+NVNK+LVGNK D+ E+ R V G+ALADE GI F ETSAK NVE++
Sbjct: 103 LNEIDRYASENVNKLLVGNKCDLAEN-RVVSYEAGKALADEIGIPFLETSAKDATNVEKA 161
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492
F+ + K + QGRT ++ Q + A Q S C
Sbjct: 162 FMTMAGEIKNRMA---SQGRTNASKPATVQMPRQPVAQQSSCC 201
>gi|81634|pir||PS0279 GTP-binding protein ara-5 - Arabidopsis thaliana
(fragment)
Length = 196
Frame 1 hits (HSPs): __________________________________
Annotated Domains: _____
__________________________________________________
Database sequence: | | | | | 196
0 50 100 150
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 8..15
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 4..17
__________________
Plus Strand HSPs:
Score = 443 (155.9 bits), Expect = 6.9e-41, P = 6.9e-41
Identities = 83/131 (63%), Positives = 105/131 (80%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W
Sbjct: 36 VDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQW 95
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+ I+++ASDNVNK+LVGNK+D+ E+ RA+P +A ADE GI F ETSAK NVE++
Sbjct: 96 LSEIDRYASDNVNKLLVGNKSDLTEN-RAIPYETAKAFADEIGIPFMETSAKDATNVEQA 154
Query: 364 FLLNSKRYKTK 396
F+ S K +
Sbjct: 155 FMAMSASIKER 165
>gi|217841|dbj|BAA00832.1| (D01027) small GTP-binding protein [Arabidopsis
thaliana]
Length = 195
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | 195
0 50 100 150
Plus Strand HSPs:
Score = 443 (155.9 bits), Expect = 6.9e-41, P = 6.9e-41
Identities = 83/131 (63%), Positives = 105/131 (80%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W
Sbjct: 35 VDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQW 94
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+ I+++ASDNVNK+LVGNK+D+ E+ RA+P +A ADE GI F ETSAK NVE++
Sbjct: 95 LSEIDRYASDNVNKLLVGNKSDLTEN-RAIPYETAKAFADEIGIPFMETSAKDATNVEQA 153
Query: 364 FLLNSKRYKTK 396
F+ S K +
Sbjct: 154 FMAMSASIKER 164
>gi|5902803|sp|P28188|ARA5_ARATH RAS-RELATED PROTEIN ARA-5
>gi|2317906|gb|AAC24370.1| (U89959) ARA-5 [Arabidopsis thaliana]
Length = 258
Frame 1 hits (HSPs): __________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 258
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez np-binding site: GTP (BY SIMILARITY). 70..77
Entrez np-binding site: GTP (BY SIMILARITY). 118..122
Entrez np-binding site: GTP (BY SIMILARITY). 176..179
Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 92..100
Entrez lipid-binding site: GERANYL-GERANYL (BY 255
Entrez lipid-binding site: GERANYL-GERANYL (BY 256
PFAM ras: Ras family 65..258
PRODOM PD195151: ARA5_ARATH 1..60
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 62..226
PRODOM PD005108: 228..257
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 70..77
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 66..79
__________________
Plus Strand HSPs:
Score = 443 (155.9 bits), Expect = 6.9e-41, P = 6.9e-41
Identities = 83/131 (63%), Positives = 105/131 (80%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W
Sbjct: 98 VDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQW 157
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+ I+++ASDNVNK+LVGNK+D+ E+ RA+P +A ADE GI F ETSAK NVE++
Sbjct: 158 LSEIDRYASDNVNKLLVGNKSDLTEN-RAIPYETAKAFADEIGIPFMETSAKDATNVEQA 216
Query: 364 FLLNSKRYKTK 396
F+ S K +
Sbjct: 217 FMAMSASIKER 227
>gi|464553|sp|P35281|RB10_RAT RAS-RELATED PROTEIN RAB-10
>gi|455344|gb|AAA41991.1| (M83677) RAB10 [Rattus norvegicus]
Length = 200
Frame 1 hits (HSPs): ________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 6..151
Entrez np-binding site: GTP (BY SIMILARITY). 16..23
Entrez np-binding site: GTP (BY SIMILARITY). 64..68
Entrez np-binding site: GTP (BY SIMILARITY). 122..125
Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 38..46
Entrez lipid-binding site: GERANYL-GERANYL (BY 199
Entrez lipid-binding site: GERANYL-GERANYL (BY 200
PFAM ras: Ras family 11..200
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 10..31
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 33..49
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 51..73
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 113..126
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 148..170
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 9..172
PRODOM PD025962: RB10(3) 174..199
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 16..23
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 12..25
__________________
Plus Strand HSPs:
Score = 441 (155.2 bits), Expect = 1.1e-40, P = 1.1e-40
Identities = 89/163 (54%), Positives = 116/163 (71%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+ SF NI W
Sbjct: 44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW 103
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+RNI+QHA+++V ++L+ NK DMD KR VP KG+ +A E+ I+FFETSAK N+N+E++
Sbjct: 104 LRNIDQHANEDVERMLLRNKCDMDH-KRVVPKGKGEQIAREHRIRFFETSAKANINIEKA 162
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492
FL + K + N++N SG G KS C
Sbjct: 163 FLTLPEDILRKT-----PVKEPNSENVDISSG-GGVTGWKSKC 199
>gi|131847|sp|P22127|RAO1_DISOM RAS-RELATED PROTEIN ORA1 >gi|103723|pir||A38625
GTP-binding protein ora1 - electric ray (Discopyge ommata)
>gi|213115|gb|AAA49230.1| (M38390) GTP-binding protein [Discopyge
ommata]
Length = 200
Frame 1 hits (HSPs): _______________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 6..151
Entrez np-binding site: GTP (BY SIMILARITY). 16..23
Entrez np-binding site: GTP (BY SIMILARITY). 64..68
Entrez np-binding site: GTP (BY SIMILARITY). 122..125
PFAM ras: Ras family 11..200
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 10..31
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 33..49
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 51..73
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 113..126
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 148..170
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 9..172
PRODOM PD045794: RAO1_DISOM 174..199
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 16..23
PROSITE SIGMA54_INTERACT_1: Sigma-54 interaction 12..25
__________________
Plus Strand HSPs:
Score = 440 (154.9 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 80/122 (65%), Positives = 104/122 (85%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+ SF NI W
Sbjct: 44 IDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKW 103
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+RNI++HA+++V ++L+GNK DM E KR V SKG+ +A E+ I+FFETSAK N+N+E++
Sbjct: 104 LRNIDEHANEDVERMLLGNKCDM-EDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKA 162
Query: 364 FL 369
FL
Sbjct: 163 FL 164
>gi|1546067|gb|AAB08102.1| (U68069) GTPase SUrab10p [Strongylocentrotus
purpuratus]
Length = 178
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 178
0 50 100 150
Plus Strand HSPs:
Score = 438 (154.2 bits), Expect = 2.3e-40, P = 2.3e-40
Identities = 78/122 (63%), Positives = 104/122 (85%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKI+T+EL+GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+ E +F+NI W
Sbjct: 21 IDFKIKTVELNGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIMQEKTFDNIAKW 80
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+RNI++HA+++V K+L+GNK DMD+ KR + +G+ +A E GIKF ETSAK N+NVE++
Sbjct: 81 LRNIQEHANEDVEKMLLGNKCDMDD-KRMINKDRGETIAKENGIKFMETSAKANINVEQA 139
Query: 364 FL 369
F+
Sbjct: 140 FM 141
>gi|4506363 ref|NP_002861.1| RAB13, member RAS oncogene family
>gi|1710016|sp|P51153|RB13_HUMAN RAS-RELATED PROTEIN RAB-13
>gi|539606|pir||A49647 GTP-binding protein Rab13 - human
>gi|452320|emb|CAA53266.1| (X75593) rab 13 [Homo sapiens]
>gi|740475|prf||2005309B rab13 GTPase [Homo sapiens]
Length = 203
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | || 203
0 50 100 150 200
Plus Strand HSPs:
Score = 437 (153.8 bits), Expect = 3.0e-40, P = 3.0e-40
Identities = 84/146 (57%), Positives = 115/146 (78%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKIRT++++GK+IKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW
Sbjct: 43 IDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+++I+++AS V ++L+GNK DM E+KR V + LA E+GI+FFETSAK+++NV+E+
Sbjct: 103 MKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEA 161
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQN 441
F ++ K+G GR N N
Sbjct: 162 FSSLARDILLKSG-----GRRSGNGN 182
>gi|2317272|dbj|BAA21744.1| (AB006189) Rab10 [Drosophila melanogaster]
>gi|7295615|gb|AAF50924.1| (AE003572) Rab10 gene product
[Drosophila melanogaster]
Length = 204
Frame 1 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
Plus Strand HSPs:
Score = 435 (153.1 bits), Expect = 4.9e-40, P = 4.9e-40
Identities = 78/121 (64%), Positives = 104/121 (85%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+E SF NI W
Sbjct: 44 IDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKW 103
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+RNI++HA+++V K+++GNK DM + KR V +G+A+A E+GI+F ETSAK+N+N+E +
Sbjct: 104 LRNIDEHANEDVEKMILGNKCDMTD-KRVVNKERGEAIAREHGIRFMETSAKSNINIERA 162
Query: 364 F 366
F
Sbjct: 163 F 163
>gi|7438392|pir||T14391 GTP-binding protein homolog - turnip
>gi|1448941|gb|AAB04618.1| (L48181) ypt-related protein [Brassica
rapa]
Length = 206
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
Plus Strand HSPs:
Score = 434 (152.8 bits), Expect = 6.2e-40, P = 6.2e-40
Identities = 89/163 (54%), Positives = 114/163 (69%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
+DFKIRTIE DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD T+ SFNN++ W
Sbjct: 43 VDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+ I+++A+D+V K+L+GNK DM ESK V T G+ALADE GI F ETSAK + NVE++
Sbjct: 103 LSEIDRYANDSVCKLLIGNKNDMVESK-VVSTETGKALADELGIPFLETSAKDSTNVEQA 161
Query: 364 FLLNSKRYKTKAG*H*HQGRTINNQNHQDQSGKAGQAAQKSAC 492
FL + K K G H + +T + Q G+ Q C
Sbjct: 162 FLTIAGEIKKKMGSHTNANKTSGSGTVQ-MKGQPIQQNNGGGC 203
>gi|7497231|pir||T33781 hypothetical protein C39F7.4 - Caenorhabditis elegans
>gi|3806150|gb|AAC69218.1| (AF101310) similar to RAS-related
proteins; contains similarity to ADP-ribosylation factors
[Caenorhabditis elegans]
Length = 205
Frame 1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 205
0 50 100 150 200
Plus Strand HSPs:
Score = 434 (152.8 bits), Expect = 6.2e-40, P = 6.2e-40
Identities = 80/133 (60%), Positives = 107/133 (80%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+TD+ +FNN++ W
Sbjct: 46 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDITDQETFNNVKQW 105
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
++ I+++A +NVNK+LVGNK D+ +KRAV T Q A + GI F ETSAK++ NVE++
Sbjct: 106 LQEIDRYACENVNKLLVGNKCDLT-AKRAVETQAAQDYAGQLGIPFLETSAKSSTNVEQA 164
Query: 364 FLLNSKRYKTKAG 402
FL + K++ G
Sbjct: 165 FLTMASEIKSRMG 177
>gi|466170|sp|P16976|YPT1_MAIZE GTP-BINDING PROTEIN YPTM1
>gi|283055|pir||A38202 GTP-binding protein - maize
>gi|287833|emb|CAA44918.1| (X63277) yptm1 [Zea mays]
Length = 208
Frame 1 hits (HSPs): ________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 5..150
Entrez np-binding site: GTP (BY SIMILARITY). 15..22
Entrez np-binding site: GTP (BY SIMILARITY). 63..67
Entrez np-binding site: GTP (BY SIMILARITY). 121..124
Entrez Domain: EFFECTOR REGION (PROBABLE). 37..45
Entrez lipid-binding site: PALMITATE (BY SIMILA 205
Entrez lipid-binding site: GERANYL-GERANYL (BY 206
PFAM ras: Ras family 10..208
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 9..30
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 32..48
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 50..72
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 112..125
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 147..169
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..172
PRODOM PD047443: YPT1_MAIZE 174..207
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22
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Plus Strand HSPs:
Score = 433 (152.4 bits), Expect = 7.9e-40, P = 7.9e-40
Identities = 83/133 (62%), Positives = 108/133 (81%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
+DFKIRT+E++GK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+TD SFNN++ W
Sbjct: 43 VDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+ I+++A+D+V K+LVGNK D+ E+ RAV TS QA A E GI F ETSAK ++NVEE+
Sbjct: 103 LDEIDRYANDSVRKLLVGNKCDLAEN-RAVDTSVAQAYAQEVGIPFLETSAKESINVEEA 161
Query: 364 FLLNSKRYK-TKAG 402
FL S K +KAG
Sbjct: 162 FLAMSAAIKKSKAG 175
>gi|7438373|pir||S72515 GTP-binding protein RAB1 - garden petunia
>gi|4096662|gb|AAD10389.1| (U35026) Rab1-like small GTP-binding
protein [Petunia x hybrida]
Length = 202
Frame 1 hits (HSPs): _________________________________
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Database sequence: | | | | || 202
0 50 100 150 200
Plus Strand HSPs:
Score = 433 (152.4 bits), Expect = 7.9e-40, P = 7.9e-40
Identities = 82/133 (61%), Positives = 107/133 (80%), Frame = +1
Query: 4 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNW 183
+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVT+ SFNN++ W
Sbjct: 43 VDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQW 102
Query: 184 IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEES 363
+ I+++A+++V K+LVGNK D+ E+K V T G+ALADE GI F ETSAK ++NVE++
Sbjct: 103 LSEIDRYANESVCKLLVGNKCDLVENK-VVDTQTGKALADELGIPFLETSAKDSINVEQA 161
Query: 364 FLLNSKRYKTKAG 402
FL + K K G
Sbjct: 162 FLTMAGEIKKKMG 174
WARNING: HSPs involving 1180 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=6.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.368 0.166 0.675
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.337 0.143 0.471
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.324 0.137 0.405
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.346 0.147 0.498
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.363 0.162 0.673
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.345 0.153 0.504
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 179 178 10. 75 3 12 22 0.11 34
31 0.11 37
+2 0 179 178 10. 75 3 12 22 0.11 34
31 0.11 37
+1 0 179 178 10. 75 3 12 22 0.11 34
31 0.11 37
-1 0 179 178 10. 75 3 12 22 0.11 34
31 0.11 37
-2 0 179 178 10. 75 3 12 22 0.11 34
31 0.11 37
-3 0 179 178 10. 75 3 12 22 0.11 34
31 0.11 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 1230
No. of states in DFA: 597 (59 KB)
Total size of DFA: 212 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 228.37u 1.07s 229.44t Elapsed: 00:01:39
Total cpu time: 228.50u 1.12s 229.62t Elapsed: 00:01:39
Start: Thu Feb 15 01:05:53 2001 End: Thu Feb 15 01:07:32 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000