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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs879044          
refSNP ID: rs879044
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:A
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss1304624 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs879044 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss1304624TSC-CSHL|TSC0213012fwd/TA/Gcaaaaacaaccaacaacaataacaaaaaatctataaaaaaccctcatattcattatagca09/06/0010/10/0386Genomic95 %
ss40218575ABI|hCV12052872fwd/TA/Gcaaaaacaaccaacaacaataacaaaaaatctataaaaaaccctcatattcattatagca07/16/0507/16/05126Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs879044|allelePos=143|totalLen=850|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=126
 ctgcttggga ggttgagatg gaagaatcac ttgaatcctg gaggtggagg ttgcattgag
 ccaagatcat gccattgcac tgcagcctgg gtgacagagt aagactccat ctcaaaaaca
 accaacaaca ataacaaaaa aT
 R
 CTATAAAAAA CCCTCATATT CATTATAGCA ATAGAAATAA GCTACTTAGA AATATATCTT
 ATAAAATGTT AAATTTAAAA TGAGAACTGT CTGGGAATAA ATCTTCCAAA AACCACATAT
 AAACTGAAAA ATTATGAATA CAATAATGTT TTAAAGTTTG TAAAAGAAAA ACTAAAAAAT
 Gggccgggca tggtggctca tgcctgtaat cccagcactt tgggaggccg aagcaggtag
 atcacgaggt catgagatcg agaccatcct ggctaacact gggaggctga agcaggtgga
 tcacgaggtc atgagatcga gaccatcctg gctaacatgg tgaaacccca tctctactaa
 aaatacaaaa aattagctgg cagtggtggc gggcgcctat agtcccagct acttgggagg
 ctgaggcagg agaatggcgt gaacccggga ggcagagctt gcagtgagcc gagattgcgc
 cactgtactc cagcgtgggt gacagagcga gactccatct caaaaaaaaa aaaaaaaaaa
 gaaaaaaGGA AAAATGGAAA GATTATTtgt tactgagcaa taggcttact ttacaacatg
 cacaggagcc aacattatgg gtcccttttt tgaggaagaa aaaaaaagct ttataccaag
 tcaactggca aggagacaag aggcatgctc agatctgtct ctgtgaT

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs879044 maps exactly once on NCBI human chromosome 12
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
12NW_001838068.2232502130385355minusTalt_assembly_8HuRefHuRefview142
12NT_024477.13798894132115959plusAref_assemblyreferencereferenceview142
12NW_925428.1758285133306181plusAalt_assembly_1CeleraCeleraview142

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
AC026338.9
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .