Reference SNP(refSNP) Cluster Report: rs606629

Reference SNP(refSNP) Cluster Report: rs606629

refSNP ID: rs606629
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	83/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss778710 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs606629 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss778710	SC_JCM\|AL355998.3_52462	fwd/B	C/T	acagccagggcaagtaaccttttcttgtcc	tcagtcctgcttatctcagcgccctgaatg	07/27/00	10/10/03	83	Genomic	unknown
ss1075829	KWOK\|OVLP-000804-37931	fwd/B	C/T	acagccagggcaagtaaccttttcttgtcc	tcagtcctgcttatctcagcgccctgaatg	09/02/00	10/10/03	86	Genomic	99 %
ss1714901	KWOK\|OVLP-000925-695776	fwd/B	C/T	acagccagggcaagtaaccttttcttgtcc	tcagtcctgcttatctcagcgccctgaatg	10/05/00	10/10/03	87	Genomic	99 %
ss1715466	KWOK\|OVLP-000925-703613	fwd/B	C/T	acagccagggcaagtaaccttttcttgtcc	tcagtcctgcttatctcagcgccctgaatg	10/05/00	10/10/03	87	Genomic	99 %
ss13025763	SC_SNP\|NT_021937.15_2734059	rev/T	A/G	cattcagggcgctgagataagcaggactga	ggacaagaaaaggttacttgccctggctgt	10/22/03	10/31/03	123	Genomic	unknown

Fasta sequence (Legend)

 TCTTTCCACC ATGGGGAGGT CTCCATGCAA TATTCTTTTT GGAGTGAGCT TTCAGAGCCA
 GCCACAAAGC CAACTCCTTC TGACCTGGCC TCAGGGTCCC AGTGGGAATC TATCTTACAG
 GGTTGCTTGG ACAGCGGGAA CCCTACTCCT TCCCTGCTTA AGGCTGGCCC ACAGCCAGGG
 CAAGTAACCT TTTCTTGTCC
 Y
 TCAGTCCTGC TTATCTCAGC GCCCTGAATG TGCCGGGCCA GCCCCTTGAT GACTCATGTC
 CTAAAATCAC GAACAGGAAG CAGCATTTGG TGTTAGCCAC AGCTCTACAA CTGCCTGCTT
 CATCTGGCCC TCCTACCGGT CCTCCTCCCT TCCCTGGGGC CACATCTTGG GCTGAGCTGG
 CCATACCATG CTGTGGGCTG

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs606629 maps exactly once on NCBI human chromosome 1

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
1	NW_923572.1	8904743	11335417	minus	G	alt_assembly_1	Celera	Celera	view	200
1	NW_001838534.1	1192708	11375374	minus	G	alt_assembly_8	HuRef	HuRef	view	200
1	NT_021937.18	6759492	12144712	minus	G	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
NT_021937 AC023251 AL355998.3 AL355998.4 AL357835.3

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
AL357835.11	AL355998.9 BX510650.2

Population Diversity

	Sample Ascertainment				Genotype Detail			Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	HWP	C	T
ss778710	SC_12_A	Asian	24	IG	1.000			1.000

	SC_12_AA	African American	20	IG	0.900	0.100	1.000	0.950	0.050

	SC_12_C	European	12	IG	1.000			1.000

	SC_95_C	European	92	IG	1.000			1.000

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.013+/-0.081	125	71	6	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .