Drosophila EvoPrinterHD - EvoPrint and EvoDifferences Profile

Conserved Sequence Parsing Instructions
To curate selected conserved sequences in both forward and reverse orientations:

1. Enter a short three to four character name to identify the origin of the sequences.

2. Using your cursor, highlight region of interest in the EvoPrint or EvoDifferences profile.

3. Select the "Extract CSBs" button

Conserved Sequence Block Name:
EvoPrint
Evodifferences Profile
Enhanced BLAT Score Card


  
    
	
	  D.melanogaster grk locus Genomic EvoPrint
    (Back to Top)
	
    
  
  
      Black capital letters represent bases in the D.melanogaster grk locus reference sequence that are conserved in the D.sechellia, D.simulans, D.yakuba, D.erecta, D.ananassae, D.pseudoobscura, D.virilis, D.willistoni  and D.mojavensis orthologous DNAs.


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
    
(ORF orientation in 3' --> 5' direction)


 gaatgttttaattctgtttcgagtcgagtcccaatcctcttctttaatacactaccaaaatagtttttctttaca
atatacacaatgtaacagagtgttacgaaaataatcacttgtcctggtaactggagtaagcgctaagattacatt
atatttcgtaatggttaatttaacGTAACaAAATGTTACtACAAACaAActacaaaagctccaacgaaagcttca
aaagcgaaacaaacgaaactaagaaatgataaagaaaagcaaatactaacttgtgcgtcTTTTGCAACTAAATAg
AaAatcctactaagtacactaaATGTATTcAATAAATTAAAGcgttaattttacgctgcgcaacgtaaagaaata
tggtcaacaagaatttgccatccaacaaagaggaggcttatataggTGAAACcAAAttGTTTCCAAAtcaaattc
taaatctcagcatcTgACaAAAAAgCGcTGCTTatGCAggTGtagtTGcTGCtgcttccggcgataatccggcaC
aTTgCGgAgCATgaAaACgGCtgCgAAgAGaACGTAgagcgacgacagcatgaggagtacgggaAAGgagAAgac
gatgtgcgccattcggaccttccgctgcgctgttggaggcgaatagatgtagtcacctgcaatgatcaatgagtt
catttagttaccatgtactgggtacagactaatagatatcgttagttccatccgttccatacaacacaggaagag
acttctgtgaatggatggctatgctagagtagagtacctaccattccagctcttgtaggcgcaccgctctccatc
gtagtcgttaacgcagaggcaggaatggaagactgtgttgttcaccatcggatgctggaagcagtggccgccgtt
caggcaaaagctagtattgtaagcttcgctgcagggcagcatctgaatctctgtctccttgtcgttcgggctggg
agtcgtggagtcaggcgtgctggacgaactggggtcaggtggcggttctccggtgtgggtaacagtttcgggtgt
tgtcactgtctcggaatcagtgattggtgtgctgctttcgctggccaaccaggtgtcggtactggatccgagaat
tatcccatcctgttccggatccgcagcaatggagtcgtctgcgtttggcagttggccgcccgagtccggattggg
atccgtatcgggatgcagctggtctgcctcctcctgggccgaggcctccagttgcttgcgctgcagctccaggcg
attgagcaactcaaccgcggtctcctggatctgctgctgcagctcgtgcgcatgctcgtgcatgtggctgtgctg
atgctgcacaattttcagcgtatgctctcggagaagtAagATtCGGCTCGAACAAcaaTCTgcagaatacagaag
aaggtgtgcgattaagaaaacaggacatttccagtgatcgcaaagatacagaatagataacgttgtaaagctcaa
gttgaagtacaaaaagctttcagtttttagtgcggcaacttttgaaattatcataaaaatgtctccctatggtat
tattattactaatttttttaatttttaagaatgcaaagtttgttcataaggacagtatttaaatgaaactcaaaa
aaatctttagaaataattcacaaatatgtatattatctgaagtttacttcattcatcatccacgaacagaaagct
aatacaggattttacacagttttcaaggaagttttagttttttagcataacaagtatataatcagcactgcaaat
attttatgatttgttgtagctgttttccagttttttcgacgctagaaatagctttttttgtgggagagcctggca
atactggccgtaatattggaatctaaaaatcaggtggagattatgtacgtACCTGTGACgGCGACAAtTGTTGAG
AGCACGAAAAtTAcTTtgaaaatccgagtaaatgggatttgcatcattggaaaacgcttggggtggcgctccgaa
aaatattgattgggtggaccgattgtccaccactaggaaaactgagtcaatgaaggggtctaaacgatcgagGGA
TCgAGCGGCGtgctGGCCGCaaatgcaaTTTGGcGTCGcaacagaagctgaAACATActacACActTGCATctcc
ttgtggatTTTACTGCAAAATAAAAATAGAACATTTTagcgcctcCACAtTTTCTGTCgCACgaacgCACACACA
CgAAACAAAAaaaaaaggaaaagaaatagcattcaaaattggtgatccaaaagcttttcatagattatcttagac
gtactggagctgctatatggcctgtagaaggcttcgacattataattattataatgactcgtgaatCATTTTata
tatcaggcaagtaattaattagttaatctaaagagcagcaagcgcgggaagcgggctcttctctgctccactttg
attttaggtcttgttgcgcgcacgtcggaaaagagactgaggaaaacagagccagagaaacagatggacctcatc
cctacattggcggcattggcatgcgccatgaatgaaatcgatcggtgagcggggagagcgaagagagcgccccca
aaagagatgcgattgcgaccgataatagtcgaagaatcatatggatatgctaagagctgcaaaaaaaaaccgccc
tttaacagttattcaatttgttaacggcacttttcactgcatacttctagggcactataaaga
  
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grk locus Genomic Evodifferences Profile - Relaxed EvoPrint

 (Back to Top)

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except D.sechellia, D.simulans, D.yakuba, D.erecta, D.ananassae, D.pseudoobscura, D.virilis, D.willistoni or D.mojavensis.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

gaatgttttaattctgtttcgagtCgagtcccaatcctcttctttaatacactaccaaaatagttTTtcTttaca
atATacacaatGTAACagAGTGTTACgaAAAtaatcacttgtcctggtaactggagtaagcgctaagattacatt
atatttcgtaatggttaatttaaCGTAACAAAATGTTACtACAAACAAACTACAAaaGCTccAACGAAAGCTTCa
AAAGCgAAAcaaacgaaactaagaaatgataaAGAAAAgcaaatactaacttgtgcgtcTTTTGCAACTAAATAg
AAAatcctactaagtacACTAAATGTATTcAATAAATTAAAGCGTtaattttacgcTGCGCAACGTaAAGAaata
TggtcaacaagaatttgccatccaacaaagaggaggcttatatagGTGAAACcAAAttGTTTCCAAATCAAattc
taaatctCAgcatcTgACAAAAAAgCGcTGCTTaTGCAggTGtAgTTGcTGCTGcTTccggcgataatccGGcaC
ATTGCGgAGCATgAAaACGGCtgCGAAgAGaACGTAgagcgacgacagcATGAggagtacgGGaAAGGAGAAgAC
gAtGtGcGCCattcggaccttccgctgcgctgttggaggcgaatagatgtagtcacctgcaatgatcaatgagtt
catttagttaccatgtactgggtacagactaatagatatcgttagttccatccgttccatacaacacaggaagag
acttctgtgaatggatggctatgctagagtagagtacctaccattccagctcttgtaggcgcaccgctctccatc
gtagtcgttaacgcagaggcaggaatggaagactgtgttgttcaccatcggatgctggaagcagtggccgccgtt
caggcaaaagctagtattgtaagcttcgctgcagggcagcatctgaatctctgtctccttgtcgttcgggctggg
agtcgtggagtcaggcgtgctggacgaactggggtcaggtggcggttctccggtgtgggtaacagtttcgggtgt
tgtcactgtctcggaatcagtgattggtgtgctgctttcgctggccaaccaggtgtcggtactggatccgagaat
tatcccatcctgttccggatccgcagcaatggagtcgtctgcgtttggcagttggccgcccgagtccggattggg
atccgtatcgggatgcagctggtctgcctcctcctgggccgaggcctccagttgcttgcgctgcagctccaggcg
attgagcaactcaaccgcggtctcctggatctgctgctgcagctcgtgcgcatgctcgtgcatgtggctgtGCTG
ATGCTgCaCAATtTtcAgCGTaTGctctcggagaAGTAAgATtCGGCTCGAACAACAATCTGcagaatacagaag
aaggtgtgcgattaagaaaacaggacatttccagtgatcgcaaagatacagaatagataacgttgtaaagctcaa
gttgaagtacaaaaagctttcagtttttagtgcggcaacttttgaaattatcataaaaatgtctccctatggtat
tattattactaatttttttaatttttaagaatgcaaagtttgttcataaggacagtatttaaatgaaactcaaaa
aaatctttagaaataattcacaaatatgtatattatctgaagtttacttcattcatcatccacgaacagaaagct
aatacaggattttacacagttttcaaggaagttttagttttttagcataacaagtatataatcagcactgcaaat
attttatgatttgttgtagctgttttccagttttttcgacgctagaaatagctttttttgtgggagagcctggca
atactggccgtaatattggaatctaaaaatcaggtggagattatgtacgTACCTGTGACgGCGACAATTGTTGAG
AGCACGAAAATTACTTTgAaaatccgagtaaatgggatTtGCATcATTGgaaaacgcttggggtggcgctccgaa
aaatattgattgggtggaccgattgtccaccactaggaaaactgagtcaatgaaggggtctaaacgatcgagGGA
TCGAGCGGCGTGctGGCCGCaAATgCAATTTGGCGTCGCAACAGAAgCtgaAACATAcTACACAcTTGCATCTCc
ttgtggatTTTACTGCAAAATAAAAATAGAACATTTTAgcgcctcCACATTTTCTGTCgCACgaACGCACACACA
CGAAACAAAAAAAAAAGGAAAAGAAAtagcattcAAAATtggTgatccaaaAgCTtttcaTAgAttatcttagac
gtactggagctgctatatggcctgtagaaggcttcgacattataattattataatgactcgTgAATCATTTTAtA
TAtcaggcaagtaattaattagttaatctaaagagcagcaagcgcgggaagcgggctcttctctgctccactttg
attttaggtcttGTTgCGCGcACGTcgGAAAAGAGACTGaGgAaAAcagagccagagaaacagatggacctcatc
cctacattggcggcattggcatgcgccatgaatgaaatcgatcggtgagcggggagagcgaagagagcgccccca
aaagagatgcgattgcgaccgataatagtcgaagaatcatatggatatgctaagagctgcaaaaaaaaaccgccc
tttaacagttattcaatttgttaacggcacttttcactgcatacttctagggcactataaagat
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Enhanced BLAT Score Card

 (Back to Top)


 Drosophila EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile


  
 Gene Name: grk locus
        

     Reference Genome: D.melanogaster
    



 Click on individual Species and Composite eBLATs to
view eBLAT alignments.



  
    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  
  
   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  
  
    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  


 
View test species eBLAT to identify gap(s).








  
    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  
  
    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2^nd or 3^rd eBLAT
    
  
  
    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  
  
    
      Red
    
    
      =  
    
    
       Common to 1^st, 2^nd  and 3^rd eBLATs
    
  
  
    
      Brown
    
    
      =  
    
    
      Common to the 1^st and 2^nd eBLATs
    
  
  
    
      Magenta
    
    
      =  
    
    
      Common to the 1^st and 3^rd eBLATs
    
  






 
    
         
            
              D.melanogaster
              (Ref  Sequence)
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2764
            1
            2764 0 8 
  
           
            149
            224
            2373 0 
                 0 /
                 141
               
  
           
            107
            483
            2312 0 
                 0 /
                 99
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.sechellia
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2636
            1
            2764 0 53 
  
           
            171
            1244
            2417 0 
                 8 /
                 101
               
  
           
            114
            1442
            2278 0 
                 7 /
                 45
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.simulans
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2616
            1
            2764 0 14 
  
           
            104
            1544
            2357 0 
                 11 /
                 78
               
  
           
            122
            103
            2525 0 
                 0 /
                 107
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.yakuba
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2246
            1
            2764 0 32 
  
           
            111
            286
            2288 0 
                 1 /
                 67
               
  
           
            108
            1297
            2307 0 
                 1 /
                 64
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              D.erecta
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2243
            1
            2759 0  
  
           
            100
            1650
            2283 0 
                 49 /
                 49
               
  
           
            121
            227
            1651 0 
                 46 /
                 73
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.ananassae
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            1250
            64
            2634 0 442 
  
           
            854
            8
            2513 0 
                 36 /
                 329
               
  
           
            666
            64
            2513 0 
                 7 /
                 170
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.pseudoobscura
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            1066
            16
            2643 0 3 
  
           
            122
            188
            2470 0 
                 12 /
                 80
               
  
           
            111
            1237
            2318 0 
                 35 /
                 46
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.persimilis
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            1021
            24
            2545 0  
  
           
            79
            1730
            2273 27 
                 33 /
                 25
               
  
           
            85
            180
            1861 0 
                 20 /
                 44
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              D.virilis
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            644
            71
            2430 0 11 
  
           
            131
            1581
            2311 0 
                 99 /
                 0
               
  
           
            107
            25
            2321 0 
                 53 /
                 22
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.willistoni
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            636
            22
            2521 0 6 
  
           
            96
            223
            2276 0 
                 37 /
                 37
               
  
           
            105
            1577
            2700 0 
                 82 /
                 1
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.mojavensis
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            579
            174
            2525 0  
  
           
            97
            1485
            2303 0 
                 58 /
                 39
               
  
           
            92
            1540
            2208 0 
                 49 /
                 43
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.grimshawi
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            531
            167
            2588 0 9 
  
           
            175
            225
            2277 0 
                 79 /
                 59
               
  
           
            88
            203
            2288 0 
                 15 /
                 36
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
D.melanogaster grk locus Genomic EvoPrint (Back to Top)
Black capital letters represent bases in the D.melanogaster grk locus reference sequence that are conserved in the D.sechellia, D.simulans, D.yakuba, D.erecta, D.ananassae, D.pseudoobscura, D.virilis, D.willistoni and D.mojavensis orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
Drosophila EvoPrinterHD - EvoPrint and EvoDifferences Profile

D.melanogaster grk locus Genomic EvoPrint (Back to Top)

grk locus Genomic Evodifferences Profile - Relaxed EvoPrint (Back to Top)

Enhanced BLAT Score Card (Back to Top)

Drosophila EvoPrinterHD - Generate EvoPrint and EvoDifferences Profile
