NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs3765322          
refSNP ID: rs3765322
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:107/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:G/T
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
NM_005823.4:c.1075-41T>G
NM_013404.3:c.1075-41T>G
NT_037887.4:g.756295T>G
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss43926612 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs3765322 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss4951362YUSUKE|IMS-JST119450fwd/BG/Tgcctgctgtgtccaagccatccccagccccctgggagtgacatgggccctcctggtctct08/07/0210/10/03107Genomicunknown
ss12378950WI_SSAHASNP|chr16.NT_037887.3_756295fwd/BG/Tgcctgctgtgtccaagccatccccagccccctgggagtgacatgggccctcctggtctct07/04/0310/10/03116Genomicunknown
ss14272559BCM_SSAHASNP|chr16.NT_037887.3_756295fwd/BG/Tgcctgctgtgtccaagccatccccagccccctgggagtgacatgggccctcctggtctct11/05/0311/22/03119Genomicunknown
ss21362383SSAHASNP|WGSA-200403-chr16.chr16.NT_037887.3_756295fwd/BG/Tgcctgctgtgtccaagccatccccagccccctgggagtgacatgggccctcctggtctct03/19/0403/19/04121Genomicunknown
ss43926612ABI|hCV2782733fwd/BG/Tgcctgctgtgtccaagccatccccagccccctgggagtgacatgggccctcctggtctct07/18/0507/18/05126Genomicunknown
ss85148167HGSV|Cor19129_SNV_20070510.chr16_756295fwd/BG/Tgcctgctgtgtccaagccatccccagccccctgggagtgacatgggccctcctggtctct12/06/0712/08/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs3765322|allelePos=301|totalLen=601|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=130
 AGGTGTGGGA GGAAGAAGGG GTCAAACGAA CTCCGGCCCT GACCCCTGAC CCCTGTGCCC
 TGCAGAGACA GCCTGTCCTT CAGGCAAGAA GGCCCGCGAG ATAGACGAGA GCCTCATCTT
 CTACAAGAAG TGGGAGCTGG AAGCCTGCGT GGATGCGGCC CTGCTGGCCA CCCAGATGGA
 CCGCGTGAAC GCCATCCCCT TCACCTACGA GCAGCTGGAC GTCCTAAAGC ATAAACTGGA
 TGAGGTAGTT CATGACTCAA GTTCCCACCG GCCTGCTGTG TCCAAGCCAT CCCCAGCCCC
 K
 CTGGGAGTGA CATGGGCCCT CCTGGTCTCT TGGCCTGCAG CTCTACCCAC AAGGTTACCC
 CGAGTCTGTG ATCCAGCACC TGGGCTACCT CTTCCTCAAG ATGAGCCCTG AGGACATTCG
 CAAGTGGAAT GTGACGTCCC TGGAGACCCT GAAGGCTTTG CTTGAAGTCA ACAAAGGGCA
 CGAAATGAGT CCTCAGGTGA CCGTCCGGCT CGGGGGTCAT GTGGCATGAG ATTGGGAAGG
 GCTGAGGGGC AGAGTGGGGG ACAAAGCCTG AGGTTGGGCG GGCCTGGGGT CAGGGGCACG

  GeneView back to top
GeneView via analysis of contig annotation: MSLN mesothelin
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_037887->NM_005823
function
referenceNT_037887->NM_013404
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_037887->NM_005823->NP_005814756295forwardintron
referenceNT_037887->NM_013404->NP_037536756295forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs3765322 maps exactly once on NCBI human chromosome 16
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
16NW_001838339.21885497738520minusCalt_assembly_8HuRefHuRefview300
16NT_037887.4756295756295plusTref_assemblyreferencereferenceview300
16NW_926018.17318191016169plusTalt_assembly_1CeleraCeleraview300

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_037887
dbSNP Blast Analysis
GenBank HTGS Finished:
AL031258.12
UniGene Cluster ID
408488

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .