| Kingdom |
Category |
Genus/Species |
Count |
| Archaea |
|
|
87 |
| |
Crenarchaeota |
|
3 |
| |
|
Aeropyrum pernix (ape) |
1 |
| |
|
Pyrobaculum aerophilum (pai) |
1 |
| |
|
Sulfolobus tokodaii (sto) |
1 |
| |
Euryarchaeota |
|
84 |
| |
|
Archaeoglobus fulgidus (afu) |
5 |
| |
|
Haloarcula marismortui (hma) |
2 |
| |
|
Methanosarcina acetivorans (mac) |
8 |
| |
|
Methanosarcina barkeri (mba) |
8 |
| |
|
Methanococcoides burtonii (mbu) |
3 |
| |
|
Methanospirillum hungatei (mhu) |
3 |
| |
|
Methanococcus jannaschii (mja) |
5 |
| |
|
Methanopyrus kandleri (mka) |
2 |
| |
|
Methanosarcina mazei (mma) |
11 |
| |
|
Methanococcus maripaludis (mmp) |
8 |
| |
|
Methanosphaera stadtmanae (mst) |
3 |
| |
|
Methanobacterium thermoautotrophicum (mth) |
5 |
| |
|
Methanosaeta thermophila (mtp) |
3 |
| |
|
Pyrococcus abyssi (pab) |
6 |
| |
|
Pyrococcus furiosus (pfu) |
1 |
| |
|
Pyrococcus horikoshii (pho) |
4 |
| |
|
Picrophilus torridus (pto) |
1 |
| |
|
Thermococcus kodakaraensis (tko) |
6 |
| Bacteria |
|
|
2818 |
| |
Acidobacteria |
|
9 |
| |
|
Acidobacteria bacterium (aba) |
4 |
| |
|
Solibacter usitatus (sus) |
5 |
| |
Actinobacteria |
|
118 |
| |
|
Arthrobacter aurescens (aau) |
1 |
| |
|
Acidothermus cellulolyticus (ace) |
2 |
| |
|
Arthrobacter sp. FB24 (art) |
3 |
| |
|
Bifidobacterium longum (blo) |
1 |
| |
|
Frankia sp. CcI3 (fra) |
1 |
| |
|
Mycobacterium vanbaalenii (mva) |
1 |
| |
|
Nocardioides sp. JS614 (nca) |
2 |
| |
|
Rhodococcus sp. RHA1 (rha) |
1 |
| |
|
Rubrobacter xylanophilus (rxy) |
6 |
| |
|
Streptomyces coelicolor (sco) |
3 |
| |
|
Streptomyces avermitilis (sma) |
3 |
| |
|
Symbiobacterium thermophilum (sth) |
94 |
| |
Bacteroides |
|
10 |
| |
|
Bacteroides fragilis YCH46 (bfr) |
3 |
| |
|
Bacteroides fragilis NCTC9343 (bfs) |
2 |
| |
|
Bacteroides thetaiotaomicron (bth) |
4 |
| |
|
Gramella forsetii (gfo) |
1 |
| |
Cyanobacteria |
|
23 |
| |
|
Anabaena sp. PCC7120 (ana) |
4 |
| |
|
Anabaena variabilis (ava) |
3 |
| |
|
Cyanobacteria Yellowstone A-Prime (cya) |
2 |
| |
|
Cyanobacteria Yellowstone B-Prime (cyb) |
1 |
| |
|
Prochlorococcus marinus MIT9312 (pmi) |
1 |
| |
|
Synechococcus elongatus PCC7942 (syf) |
3 |
| |
|
Synechocystis sp. PCC6803 (syn) |
3 |
| |
|
Thermosynechococcus elongatus (tel) |
2 |
| |
|
Trichodesmium erythraeum (ter) |
4 |
| |
Deinococcus-Thermus |
|
6 |
| |
|
Deinococcus geothermalis (dge) |
1 |
| |
|
Deinococcus radiodurans (dra) |
2 |
| |
|
Thermus thermophilus HB8 (ttj) |
3 |
| |
Firmicutes |
|
2228 |
| |
|
Bacillus anthracis Ames 0581 (bar) |
1 |
| |
|
Bacillus anthracis Sterne (bat) |
2 |
| |
|
Bacillus cereus ATCC 10987 (bca) |
28 |
| |
|
Bacillus cereus ATCC 14579 (bce) |
21 |
| |
|
Bacillus clausii (bcl) |
26 |
| |
|
Bacillus cereus ZK (bcz) |
12 |
| |
|
Bacillus halodurans (bha) |
41 |
| |
|
Bacillus licheniformis DSM13 (bld) |
24 |
| |
|
Bacillus licheniformis ATCC 14580 (bli) |
1 |
| |
|
Bacillus subtilis (bsu) |
19 |
| |
|
Bacillus thuringiensis 97-27 (btk) |
12 |
| |
|
Bacillus thuringiensis Al Hakam (btl) |
23 |
| |
|
Clostridium acetobutylicum (cac) |
38 |
| |
|
Carboxydothermus hydrogenoformans (chy) |
503 |
| |
|
Clostridium novyi (cno) |
50 |
| |
|
Clostridium perfringens 13 (cpe) |
4 |
| |
|
Clostridium perfringens ATCC 13124 (cpf) |
10 |
| |
|
Clostridium perfringens SM101 (cpr) |
5 |
| |
|
Clostridium tetani E88 (ctc) |
39 |
| |
|
Desulfitobacterium hafniense (dsy) |
375 |
| |
|
Enterococcus faecalis (efa) |
4 |
| |
|
Geobacillus kaustophilus (gka) |
84 |
| |
|
Lactobacillus delbrueckii ATCC 11842 (ldb) |
5 |
| |
|
Lactobacillus gasseri (lga) |
2 |
| |
|
Listeria innocua (lin) |
4 |
| |
|
Lactobacillus johnsonii (ljo) |
2 |
| |
|
Lactococcus lactis subsp. cremoris SK11 (llc) |
3 |
| |
|
Listeria monocytogenes F2365 (lmf) |
1 |
| |
|
Lactobacillus plantarum (lpl) |
2 |
| |
|
Lactobacillus sakei (lsa) |
1 |
| |
|
Lactobacillus salivarius (lsl) |
1 |
| |
|
Listeria welshimeri SLCC5334 (lwe) |
5 |
| |
|
Mycoplasma mobile (mmo) |
1 |
| |
|
Moorella thermoacetica (mta) |
522 |
| |
|
Oceanobacillus iheyensis (oih) |
9 |
| |
|
Staphylococcus aureus USA300 (saa) |
1 |
| |
|
Staphylococcus aureus RF122 (sab) |
1 |
| |
|
Streptococcus agalactiae A909 (serotype Ia) (sak) |
1 |
| |
|
Staphylococcus aureus MRSA252 (sar) |
1 |
| |
|
Staphylococcus aureus MSSA476 (sas) |
1 |
| |
|
Staphylococcus aureus Mu50 (sav) |
1 |
| |
|
Staphylococcus epidermidis RP62A (ser) |
1 |
| |
|
Staphylococcus haemolyticus (sha) |
5 |
| |
|
Streptococcus mutans (smu) |
1 |
| |
|
Streptococcus pneumoniae D39 (spd) |
1 |
| |
|
Streptococcus pyogenes MGAS10750 (serotype M3) (spi) |
1 |
| |
|
Streptococcus pyogenes SSI-1 (serotype M3) (sps) |
2 |
| |
|
Staphylococcus saprophyticus (ssp) |
1 |
| |
|
Streptococcus thermophilus LMD-9 (ste) |
1 |
| |
|
Syntrophomonas wolfei (swo) |
174 |
| |
|
Thermoanaerobacter tengcongensis (tte) |
155 |
| |
Fusobacteria |
|
7 |
| |
|
Fusobacterium nucleatum (fnu) |
7 |
| |
Green nonsulfur bacteria |
|
9 |
| |
|
Dehalococcoides CBDB1 (deh) |
2 |
| |
|
Dehalococcoides ethenogenes (det) |
7 |
| |
Green sulfur bacteria |
|
8 |
| |
|
Chlorobium chlorochromatii (cch) |
4 |
| |
|
Chlorobium phaeobacteroides (cph) |
2 |
| |
|
Chlorobium tepidum (cte) |
2 |
| |
Hyperthermophilic bacteria |
|
15 |
| |
|
Aquifex aeolicus (aae) |
4 |
| |
|
Thermotoga maritima (tma) |
11 |
| |
Planctomyces |
|
5 |
| |
|
Rhodopirellula baltica (rba) |
5 |
| |
Proteobacteria |
|
370 |
| |
|
Acidovorax avenae (aav) |
2 |
| |
|
Alcanivorax borkumensis (abo) |
1 |
| |
|
Acinetobacter sp. ADP1 (aci) |
1 |
| |
|
Anaeromyxobacter dehalogenans (ade) |
1 |
| |
|
Alkalilimnicola ehrlichei (aeh) |
4 |
| |
|
Aeromonas hydrophila (aha) |
5 |
| |
|
Acidovorax sp. JS42 (ajs) |
1 |
| |
|
Burkholderia cepacia (bam) |
1 |
| |
|
Bdellovibrio bacteriovorus (bba) |
2 |
| |
|
Burkholderia cenocepacia HI2424 (bch) |
2 |
| |
|
Bradyrhizobium japonicum (bja) |
2 |
| |
|
Brucella abortus (bmb) |
1 |
| |
|
Burkholderia xenovorans (bxe) |
2 |
| |
|
Coxiella burnetii (cbu) |
1 |
| |
|
Caulobacter crescentus (ccr) |
1 |
| |
|
Campylobacter jejuni NCTC11168 (cje) |
1 |
| |
|
Campylobacter jejuni 81-176 (cjj) |
1 |
| |
|
Colwellia psychrerythraea (cps) |
1 |
| |
|
Chromohalobacter salexigens (csa) |
1 |
| |
|
Chromobacterium violaceum (cvi) |
3 |
| |
|
Desulfovibrio desulfuricans (dde) |
16 |
| |
|
Desulfotalea psychrophila (dps) |
14 |
| |
|
Desulfovibrio vulgaris DP4 (dvl) |
16 |
| |
|
Desulfovibrio vulgaris Hildenborough (dvu) |
3 |
| |
|
Azoarcus sp. EbN1 (eba) |
2 |
| |
|
Erwinia carotovora (eca) |
2 |
| |
|
Escherichia coli O157 Sakai (EHEC) (ecs) |
1 |
| |
|
Escherichia coli APEC O1 (ecv) |
2 |
| |
|
Ehrlichia ruminantium Welgevonden (South Africa) (eru) |
1 |
| |
|
Francisella tularensis subsp. novicida U112 (ftn) |
1 |
| |
|
Geobacter metallireducens (gme) |
26 |
| |
|
Gluconobacter oxydans (gox) |
3 |
| |
|
Geobacter sulfurreducens (gsu) |
30 |
| |
|
Helicobacter acinonychis (hac) |
1 |
| |
|
Hahella chejuensis (hch) |
6 |
| |
|
Haemophilus ducreyi (hdu) |
1 |
| |
|
Hyphomonas neptunium (hne) |
1 |
| |
|
Helicobacter pylori J99 (hpj) |
1 |
| |
|
Lawsonia intracellularis (lip) |
4 |
| |
|
Legionella pneumophila Paris (lpp) |
1 |
| |
|
Magnetospirillum magneticum (mag) |
1 |
| |
|
Marinobacter aquaeolei (maq) |
2 |
| |
|
Mesorhizobium sp. BNC1 (mes) |
3 |
| |
|
Methylobacillus flagellatus (mfa) |
1 |
| |
|
Magnetococcus sp. MC-1 (mgm) |
17 |
| |
|
Mesorhizobium loti (mlo) |
5 |
| |
|
Mannheimia succiniciproducens (msu) |
2 |
| |
|
Myxococcus xanthus (mxa) |
6 |
| |
|
Novosphingobium aromaticivorans (nar) |
1 |
| |
|
Neisseria meningitidis MC58 (serogroup B) (nme) |
1 |
| |
|
Nitrosococcus oceani (noc) |
1 |
| |
|
Pseudomonas aeruginosa PAO1 (pae) |
1 |
| |
|
Pseudoalteromonas atlantica (pat) |
1 |
| |
|
Pelobacter carbinolicus (pca) |
13 |
| |
|
Pseudomonas entomophila (pen) |
3 |
| |
|
Pseudomonas fluorescens Pf-5 (pfl) |
2 |
| |
|
Pseudomonas fluorescens PfO-1 (pfo) |
1 |
| |
|
Pseudoalteromonas haloplanktis (pha) |
1 |
| |
|
Psychromonas ingrahamii (pin) |
2 |
| |
|
Photorhabdus luminescens (plu) |
1 |
| |
|
Polaromonas naphthalenivorans (pna) |
1 |
| |
|
Polaromonas sp. JS666 (pol) |
2 |
| |
|
Pelobacter propionicus (ppd) |
10 |
| |
|
Photobacterium profundum (ppr) |
2 |
| |
|
Ralstonia eutropha H16 (reh) |
3 |
| |
|
Ralstonia metallidurans (rme) |
1 |
| |
|
Rhodopseudomonas palustris CGA009 (rpa) |
1 |
| |
|
Rhodopseudomonas palustris BisB18 (rpc) |
1 |
| |
|
Rhodopseudomonas palustris BisB5 (rpd) |
1 |
| |
|
Rhodospirillum rubrum (rru) |
1 |
| |
|
Ralstonia solanacearum (rso) |
1 |
| |
|
Syntrophus aciditrophicus (sat) |
22 |
| |
|
Shewanella amazonensis (saz) |
1 |
| |
|
Shigella boydii (sbo) |
1 |
| |
|
Shewanella denitrificans (sdn) |
1 |
| |
|
Shigella dysenteriae (sdy) |
1 |
| |
|
Salmonella enterica serovar Choleraesuis (sec) |
14 |
| |
|
Syntrophobacter fumaroxidans (sfu) |
35 |
| |
|
Shigella flexneri 8401 (serotype 5b) (sfv) |
1 |
| |
|
Sodalis glossinidius (sgl) |
4 |
| |
|
Shewanella sp. MR-7 (shm) |
1 |
| |
|
Shewanella sp. ANA-3 (shn) |
2 |
| |
|
Shewanella sp. W3-18-1 (shw) |
8 |
| |
|
Shewanella oneidensis (son) |
2 |
| |
|
Shigella sonnei (ssn) |
1 |
| |
|
Salmonella typhimurium LT2 (stm) |
2 |
| |
|
Salmonella enterica serovar Typhi Ty2 (stt) |
1 |
| |
|
Thiobacillus denitrificans (tbd) |
1 |
| |
|
Thiomicrospira crunogena (tcx) |
2 |
| |
|
Thiomicrospira denitrificans (tdn) |
1 |
| |
|
Vibrio cholerae (vch) |
1 |
| |
|
Verminephrobacter eiseniae (vei) |
1 |
| |
|
Vibrio fischeri (vfi) |
1 |
| |
|
Vibrio parahaemolyticus (vpa) |
2 |
| |
|
Vibrio vulnificus YJ016 (vvy) |
2 |
| |
|
Wolbachia wMel (wol) |
1 |
| |
|
Wolinella succinogenes (wsu) |
1 |
| |
|
Xanthomonas campestris pv. campestris 8004 (xcb) |
2 |
| |
|
Xylella fastidiosa Temecula1 (xft) |
1 |
| |
|
Xanthomonas oryzae MAFF311018 (xom) |
1 |
| |
|
Yersinia pseudotuberculosis (yps) |
1 |
| |
Spirochete |
|
10 |
| |
|
Leptospira borgpetersenii JB197 (lbj) |
2 |
| |
|
Leptospira borgpetersenii L550 (lbl) |
3 |
| |
|
Leptospira interrogans serovar Copenhageni (lic) |
1 |
| |
|
Treponema denticola (tde) |
4 |
| Eukaryotes |
|
|
13 |
| |
Animals |
|
7 |
| |
|
Danio rerio (zebrafish) (dre) |
1 |
| |
|
Mus musculus (mouse) (mmu) |
1 |
| |
|
Rattus norvegicus (rat) (rno) |
4 |
| |
|
Xenopus tropicalis (western clawed frog) (xtr) |
1 |
| |
Protists |
|
6 |
| |
|
Leishmania major (lma) |
2 |
| |
|
Plasmodium falciparum (pfa) |
2 |
| |
|
Trypanosoma brucei (tbr) |
1 |
| |
|
Trypanosoma cruzi (tcr) |
1 |
| NULL |
|
|
370 |
| TOTAL |
|
|
3288 |
![[space]](http://homer.ornl.gov/compbio/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}