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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs35665914          
refSNP ID: rs35665914
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:126/129
Map to Genome Build:36.3
Allele
Variation Class:DIP:
deletion/insertion polymorphism
RefSNP Alleles:-/AAA
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NT_009755.18:g.597925_597926ins3
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss50167539 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs35665914 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss50167539DEVINE_LAB|INDEL_GP35_WGS_391064fwd/-/AAAaatggttaccaggaaactacgaaatctctaaaaaaaaaaaaaaaaaaaaaagccagcaag01/24/0601/24/06126Genomic-unknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs35665914|allelePos=401|totalLen=801|taxid=9606|snpclass=2|alleles='-/AAA'|mol=Genomic|build=126
 GGCAGATGAT CAGTAGAAAG TCAGCCACTG CCAGGTTGAA CAGGAAAATC CGGCTGGATT
 TCCAGGACTT GAGGTGGAAA CAGAAAATCC ACAGGGCAAG GCCATTGCCC AGAAGCCCGA
 AGATAAACTC CAGCCCCAAC ACCGGCGGCA ACACCTTGAC AATGAAGTCA TCTCGGAACA
 CACAGCAGTT CTTCTTGTCT ATTTCCAGAA AGTGATCCTG CAGATGGTGC CGATTCATGA
 GTGCGGCTAG TGAGTCCGAT GGAGCGCCTC GCCTAGTGAA TGCTCCAGCA AGGAGGTGTG
 TGTCTGTGTG GTGAACGTGT GGTTCCACGC CTGCCTTTAT GTCATGTCAG GGTGTTGAAA
 TAGATGACTG AATGGTTACC AGGAAACTAC GAAATCTCTA
 N
 AAAAAAAAAA AAAAAAAAAA AGCCAGCAAG GCTCTTATGC AACCTGCTGT TTGCATAAAC
 AAGTAATAAG AATCCCCTGG GCAGACGGGA ACCCACAAAA TGTCTTAAAT GTAAAGGATA
 AGTTTAGGCA AGCCGACTGT CATTCGAAAA TCAGTGAAAC ATGAAGGACA TCCCTTTGGA
 AGGCTGGGTG CTTGTATGCC AACTGAGTAC TCAACGTTGC AGAATTAATT CACCGTCATC
 TGCTTGGCTG ACATAATTAA CAAAACAACA ACAATAGCAA TAACAATTTT TGGTGCCAAA
 CAGTGAGGTT TTCCAGAAAC ACTAAGAATT AGCATGAAAA ATTAACAGGC ATATGACATA
 AACAGTAGCA GACATATGAT TTCTTTTGGA AATGCTGAGA

  GeneView back to top
GeneView via analysis of contig annotation: GPR109A G protein-coupled receptor 109A
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_009755->NM_177551
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_009755->NM_177551->NP_808219597925:597926reverse5' near gene

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs35665914 maps exactly once on NCBI human chromosome 12
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
12NW_001838064.25795426^5795427120148352^120148353minus-alt_assembly_8HuRefHuRefview400..400
12NT_009755.18597925^597926121753945^121753946plus-ref_assemblyreferencereferenceview400..400
12NW_925395.170404658^70404659122780829^122780830plus-alt_assembly_1CeleraCeleraview400..401
12NW_925395.170418081^70418082122794252^122794253plus-alt_assembly_1CeleraCeleraview400..401

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_009755
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .