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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs10654655          
refSNP ID: rs10654655
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/129
Map to Genome Build:36.3
Allele
Variation Class:DIP:
deletion/insertion polymorphism
RefSNP Alleles:-/AAA
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NT_009755.18:g.597924_597925ins3
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss15085720 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10654655 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss15085720DEVINE_LAB|INDEL_GP34_WGS_175793fwd/B-/AAAgaatggttaccaggaaactacgaaatctctaaaaaaaaaaaaaaaaaaaaaagccagcaa11/13/0311/22/03119Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs10654655|allelePos=401|totalLen=801|taxid=9606|snpclass=2|alleles='-/AAA'|mol=Genomic|build=119
 AGGCAGATGA TCAGTAGAAA GTCAGCCACT GCCAGGTTGA ACAGGAAAAT CCGGCTGGAT
 TTCCAGGACT TGAGGTGGAA ACAGAAAATC CACAGGGCAA GGCCATTGCC CAGAAGCCCG
 AAGATAAACT CCAGCCCCAA CACCGGCGGC AACACCTTGA CAATGAAGTC ATCTCGGAAC
 ACACAGCAGT TCTTCTTGTC TATTTCCAGA AAGTGATCCT GCAGATGGTG CCGATTCATG
 AGTGCGGCTA GTGAGTCCGA TGGAGCGCCT CGCCTAGTGA ATGCTCCAGC AAGGAGGTGT
 GTGTCTGTGT GGTGAACGTG TGGTTCCACG CCTGCCTTTA TGTCATGTCA GGGTGTTGAA
 ATAGATGACT GAATGGTTAC CAGGAAACTA CGAAATCTCT
 N
 aaaaaaaaaa aaaaaaaaaa aaGCCAGCAA GGCTCTTATG CAACCTGCTG TTTGCATAAA
 CAAGTAATAA GAATCCCCTG GGCAGACGGG AACCCACAAA ATGTCTTAAA TGTAAAGGAT
 AAGTTTAGGC AAGCCGACTG TCATTCGAAA ATCAGTGAAA CATGAAGGAC ATCCCTTTGG
 AAGGCTGGGT GCTTGTATGC CAACTGAGTA CTCAACGTTG CAGAATTAAT TCACCGTCAT
 CTGCTTGGCT GACATAATTA ACAAAACAAC AACAATAGCA ATAACAATTT TTGGTGCCAA
 ACAGTGAGGT TTTCCAGAAA CACTAAGAAT TAGCATGAAA AATTAACAGG CATATGACAT
 AAACAGTAGC AGACATATGA TTTCTTTTGG AAATGCTGAG

  GeneView back to top
GeneView via analysis of contig annotation: GPR109A G protein-coupled receptor 109A
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_009755->NM_177551
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_009755->NM_177551->NP_808219597924:597925reverse5' near gene

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs10654655 maps exactly once on NCBI human chromosome 12
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
12NW_001838064.25795427^5795428120148351^120148352minus-alt_assembly_8HuRefHuRefview400..400
12NT_009755.18597924^597925121753944^121753945plus-ref_assemblyreferencereferenceview400..400
12NW_925395.170404657^70404658122780828^122780829plus-alt_assembly_1CeleraCeleraview400..401
12NW_925395.170418080^70418081122794251^122794252plus-alt_assembly_1CeleraCeleraview400..401

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_009755
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .