NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs6841149          
refSNP ID: rs6841149
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NM_018717.3:c.2416+2326G>A
NT_016354.18:g.65192726C>T
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss20205541 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs6841149 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss10156952BCM_SSAHASNP|chr4.NT_016606.15_2164244fwd/BC/Tctgcctcctgagttcaagcaattctcctgcccagcctccggagtagctgggattacaggc06/27/0310/10/03116Genomicunknown
ss20205541CSHL-HAPMAP|CSHL-HuFF-200402.chr4.NT_016606.16_2192635fwd/BC/Tctgcctcctgagttcaagcaattctcctgcccagcctccggagtagctgggattacaggc02/21/0403/04/04120Genomicunknown
ss42305290ABI|hCV11583133fwd/BC/Tctgcctcctgagttcaagcaattctcctgcccagcctccggagtagctgggattacaggc07/17/0507/17/05126Genomicunknown
ss83945517HGSV|Cor18956_SNV_20070510.chr4_141002184fwd/BC/Tctgcctcctgagttcaagcaattctcctgcccagcctccggagtagctgggattacaggc11/30/0712/06/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs6841149|allelePos=460|totalLen=960|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=130
 TATTCTCTAC TGAACCGTGT TCCACGTCAC GAATAGAAAA TGCAAAGTGA TCAGCCATTT
 CTTTCTAATT TAGCCCCAAA GGTGAATTCT CTCTCACCTC CAAAGAAAAT AGTATCTTAT
 TGGTTGAGGA TGATATCATA TCTATATGAG TGCGAAATAA TTTGCTTCTG AAGTATAAAC
 AAGAATTACA TCAGGATCTG TTAAGTGGAA AAGTCAGCTT CAAAAACCCA TGTACAGTAC
 AATCCCAATT TTTGTGGGTG TCTATTTATA TAGAAACAAA AGAATAGGAT TGATCATCTC
 TGGATGGTGG GATTTCAGGT GACTTTAATT TTTGTCTCTG Gttttttttg tttctttttt
 ctgggacaca gttttgctct tgttgcccag gctggagtgc aatggcacga tcttggctca
 ccacaacctc tgcctcctga gttcaagcaa ttctcctgc
 Y
 ccagcctccg gagtagctgg gattacaggc atgcgccact atgcctggct aattttttgt
 atttttagta gagacggggt ttctccatgt tggtcaggct ggtctcgaac tcccgacctc
 aggtgaactg cccgcctcgg cctcccaacg tgctgggatt acaggagtga gcaactgcac
 ctgCCTGGAA TAGAAGTTTT TAACTGGACC CAAAACATTC AGAATAGCTC ATATGTGTCT
 ATGTTCTGTA ACACAGGGGA ATTATTAAAT AATTCCCCTT TTCCCCCACA AATAATACAT
 GAGTTATGAA CCTGGAAAAC TCAAGAGACA TTATGCTGGG TTTATCAGCT TTTATGTTTT
 TAATTAGTTC ATAATATAAT Gcagcagctc tcaagcgtgg ttccctagct agcaaaatca
 gtgactcctg ggaacttgta aaaaatgcag attctcaagc cccgcttcag atttactgaa
 tcagaaacac tgTGTATGTT

  GeneView back to top
GeneView via analysis of contig annotation: MAML3 mastermind-like 3 (Drosophila)
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_016354->NM_018717
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_016354->NM_018717->NP_06118765192726reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs6841149 maps exactly once on NCBI human chromosome 4
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
4NW_001838921.1855916136373677plusCalt_assembly_8HuRefHuRefview459
4NW_922217.120234876137977397plusCalt_assembly_1CeleraCeleraview459
4NT_016354.1865192726140864029plusCref_assemblyreferencereferenceview459

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_016606
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterwith2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .