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Sample GSM3145 Query DataSets for GSM3145
Status Public on Jul 01, 2003
Title Gastrointestinal Stroma Tumor: patient GIST-8, tumor tissue, 1st repetition [2]
Sample type RNA
 
Source Name Gastrointestinal Stroma Tumor
Organism(s) Homo sapiens
Extracted molecule total RNA
 
Description patientid=GIST-8
sex=f
age=60
birthyear=1933
stage=primary
type=GIST
tumorsite=stomach
survival_months=14
died=yes
tumorsize.cm=12
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=11
mucosal_ulceration=(not available)
metastases_or_recurrence=yes
comment=retroperitoneal left upper abdominal cavity (stomach)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623155 reuse=2 date=27-Sep-2000
 
Submission date Dec 11, 2002
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL10
Series (1)
GSE112 Distinctive gene expression patterns in gastrointestinal stromal tumors identified with cDNA arrays

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-BKD_RAW

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 477194 452929 24265
2 706692 452929 253763
3 728619 452929 275690
4 575018 452929 122089
5 635256 452929 182327
6 2112992 452929 1660063
7 576978 452929 124049
8 456915 452929 3986
9 354821 452929 -98108
10 751481 452929 298552
11 621499 452929 168570
12 536133 452929 83204
13 401086 452929 -51843
14 330803 452929 -122126
15 430555 452929 -22374
16 535712 452929 82783
17 2008788 423801 1584987
18 392336 423801 -31465
19 431761 423801 7960
20 539522 423801 115721

Total number of rows: 36865

Table truncated, full table size 1000 Kbytes.




Supplementary data files not provided

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