BLASTX+BEAUTY Search Results
WU-BLAST 2.0 search of the National Center for Biotechnology
Information's NR Protein Database.
BEAUTY post-processing provided by the
Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract
RepeatMasker repeats found in sequence:
No Repeats Found.
Reference: Gish, Warren (1994-1997). unpublished.
Gish, Warren and David J. States (1993). Identification of protein coding
regions by database similarity search. Nat. Genet. 3:266-72.
Notice: statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.
Query= 'D16H02_P14_15.ab1'
(361 letters)
Translating both strands of query sequence in all 6 reading frames
Database: nr
625,274 sequences; 197,782,623 total letters.
Observed Numbers of Database Sequences Satisfying
Various EXPECTation Thresholds (E parameter values)
Histogram units: = 5 Sequences : less than 5 sequences
EXPECTation Threshold
(E parameter)
|
V Observed Counts-->
10000 946 273 |======================================================
6310 673 174 |==================================
3980 499 115 |=======================
2510 384 105 |=====================
1580 279 121 |========================
1000 158 61 |============
631 97 34 |======
398 63 25 |=====
251 38 21 |====
158 17 7 |=
100 10 2 |:
63.1 8 1 |:
39.8 7 3 |:
25.1 4 0 |
15.8 4 1 |:
>>>>>>>>>>>>>>>>>>>>> Expect = 10.0, Observed = 3 <<<<<<<<<<<<<<<<<
10.0 3 0 |
6.31 3 0 |
3.98 3 1 |:
2.51 2 0 |
1.58 2 1 |:
Smallest
Sum
Reading High Probability
Sequences producing High-scoring Segment Pairs: Frame Score P(N) N
gi|9758595|dbj|BAB09228.1|(AB009050) gene_id:MDF20.5~... +3 199 1.1e-14 1
gi|9798570|emb|CAC03525.1|(AJ276410) BlpN protein [St... +3 63 0.79 1
gi|109294|pir||S17872translation initiation factor eI... +3 61 0.93 1
Use the 
and 
icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|9758595|dbj|BAB09228.1| (AB009050) gene_id:MDF20.5~unknown protein
[Arabidopsis thaliana]
Length = 329
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 329
0 150 300
Plus Strand HSPs:
Score = 199 (70.1 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 38/66 (57%), Positives = 47/66 (71%), Frame = +3
Query: 9 TNQVGVLGQKVFIAXVRCTSSLIFASIGAGIGATLIRPSLGQWVGCALGDLGGPIIVAFC 188
+ Q LG KV VRC +SL+FA+IGAGI + LIRPS GQW+GCALGDL GP++V+ C
Sbjct: 261 SQQAKDLGNKVVGITVRCGASLVFAAIGAGICSCLIRPSTGQWIGCALGDLAGPMVVSVC 320
Query: 189 ADKLFQ 206
K Q
Sbjct: 321 LQKTLQ 326
>gi|9798570|emb|CAC03525.1| (AJ276410) BlpN protein [Streptococcus pneumoniae]
>gi|11611211|emb|CAC18598.1| (AJ278419) putative bacteriocin
[Streptococcus pneumoniae]
Length = 67
Frame 3 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 67
0 20 40 60
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 1.6, P = 0.79
Identities = 12/39 (30%), Positives = 20/39 (51%), Frame = +3
Query: 75 IFASIGAGIGATLIRPSLGQWVGCALGDLGGPIIVAFCA 191
+ A++G G LG W G A+G +GG ++ + A
Sbjct: 25 VVAALGCAAGGVKYGRLLGPW-GAAIGGIGGAVVCGYLA 62
>gi|109294|pir||S17872 translation initiation factor eIF-2 gamma chain - rabbit
Length = 78
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 78
0 20 40 60
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 2.6, P = 0.93
Identities = 16/49 (32%), Positives = 24/49 (48%), Frame = +3
Query: 18 VGVLGQKVFIAXVRCTSSLIFASIGAGIGATLIRPSLGQWVGCALGDLG 164
+G L +++ V+ I + G G TL +P L WVG LG +G
Sbjct: 23 IGSLSTGGWVSAVKADLGKIVLTAGGEAGVTLGQPXL--WVGQVLGAVG 69
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.95
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.355 0.161 0.550
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.357 0.157 0.685
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.353 0.162 0.530
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.343 0.148 0.519
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.373 0.167 0.662
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.337 0.141 0.434
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 119 117 10. 71 3 12 22 0.094 33
29 0.10 35
+2 0 120 118 10. 71 3 12 22 0.095 33
29 0.10 35
+1 0 120 119 10. 71 3 12 22 0.096 33
29 0.11 35
-1 0 120 118 10. 71 3 12 22 0.095 33
29 0.10 35
-2 0 120 119 10. 71 3 12 22 0.096 33
29 0.11 35
-3 0 119 117 10. 71 3 12 22 0.094 33
29 0.10 35
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 3
No. of states in DFA: 594 (59 KB)
Total size of DFA: 161 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 114.09u 1.05s 115.14t Elapsed: 00:00:25
Total cpu time: 114.12u 1.05s 115.17t Elapsed: 00:00:25
Start: Thu Jan 17 16:16:22 2002 End: Thu Jan 17 16:16:47 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000