BLASTX+BEAUTY Search Results
WU-BLAST 2.0 search of the National Center for Biotechnology
Information's NR Protein Database.
BEAUTY post-processing provided by the
Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract
RepeatMasker repeats found in sequence:
No Repeats Found.
Reference: Gish, Warren (1994-1997). unpublished.
Gish, Warren and David J. States (1993). Identification of protein coding
regions by database similarity search. Nat. Genet. 3:266-72.
Notice: statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.
Query= 'D05F06.seq'
(409 letters)
Translating both strands of query sequence in all 6 reading frames
Database: nr
625,274 sequences; 197,782,623 total letters.
Observed Numbers of Database Sequences Satisfying
Various EXPECTation Thresholds (E parameter values)
Histogram units: = 3 Sequences : less than 3 sequences
EXPECTation Threshold
(E parameter)
|
V Observed Counts-->
10000 715 166 |=======================================================
6310 549 113 |=====================================
3980 436 101 |=================================
2510 335 128 |==========================================
1580 207 90 |==============================
1000 117 31 |==========
631 86 34 |===========
398 52 30 |==========
251 22 11 |===
158 11 4 |=
100 7 0 |
63.1 7 3 |=
39.8 4 1 |:
25.1 3 1 |:
15.8 2 0 |
>>>>>>>>>>>>>>>>>>>>> Expect = 10.0, Observed = 2 <<<<<<<<<<<<<<<<<
10.0 2 0 |
6.31 2 0 |
3.98 2 0 |
2.51 2 1 |:
Smallest
Sum
Reading High Probability
Sequences producing High-scoring Segment Pairs: Frame Score P(N) N
gi|9758595|dbj|BAB09228.1|(AB009050) gene_id:MDF20.5~... +1 203 3.7e-15 1
gi|9798570|emb|CAC03525.1|(AJ276410) BlpN protein [St... +1 63 0.91 1
Use the 
and 
icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|9758595|dbj|BAB09228.1| (AB009050) gene_id:MDF20.5~unknown protein
[Arabidopsis thaliana]
Length = 329
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 329
0 150 300
Plus Strand HSPs:
Score = 203 (71.5 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 38/60 (63%), Positives = 46/60 (76%), Frame = +1
Query: 16 LGQKVFIATVRCTSSLIFASIGAGIGATLIRPSLGQWVGCALGDLGGPIIVAFCADKLFQ 195
LG KV TVRC +SL+FA+IGAGI + LIRPS GQW+GCALGDL GP++V+ C K Q
Sbjct: 267 LGNKVVGITVRCGASLVFAAIGAGICSCLIRPSTGQWIGCALGDLAGPMVVSVCLQKTLQ 326
>gi|9798570|emb|CAC03525.1| (AJ276410) BlpN protein [Streptococcus pneumoniae]
>gi|11611211|emb|CAC18598.1| (AJ278419) putative bacteriocin
[Streptococcus pneumoniae]
Length = 67
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 67
0 20 40 60
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 2.4, P = 0.91
Identities = 12/39 (30%), Positives = 20/39 (51%), Frame = +1
Query: 64 IFASIGAGIGATLIRPSLGQWVGCALGDLGGPIIVAFCA 180
+ A++G G LG W G A+G +GG ++ + A
Sbjct: 25 VVAALGCAAGGVKYGRLLGPW-GAAIGGIGGAVVCGYLA 62
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.355 0.158 0.654
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.363 0.168 0.574
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.356 0.162 0.575
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.373 0.168 0.638
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.338 0.143 0.461
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.340 0.147 0.500
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 135 135 10. 73 3 12 22 0.11 33
30 0.099 36
+2 0 136 136 10. 73 3 12 22 0.11 33
30 0.10 36
+1 0 136 136 10. 73 3 12 22 0.11 33
30 0.10 36
-1 0 136 136 10. 73 3 12 22 0.11 33
30 0.10 36
-2 0 136 136 10. 73 3 12 22 0.11 33
30 0.10 36
-3 0 135 135 10. 73 3 12 22 0.11 33
30 0.099 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 2
No. of states in DFA: 594 (59 KB)
Total size of DFA: 173 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 130.83u 1.17s 132.00t Elapsed: 00:00:27
Total cpu time: 130.86u 1.19s 132.05t Elapsed: 00:00:27
Start: Wed Jan 16 15:51:27 2002 End: Wed Jan 16 15:51:54 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000