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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs831952          
refSNP ID: rs831952
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:A
Clinical Association:unknown
HGVS Names
NM_031272.3:c.2576+1333A>G
NM_198393.2:c.2576+1333A>G
NT_010783.14:g.15322861T>C
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss1928274 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs831952 during BLAST analysis for the current build.

NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss1143458KWOK|OVLP-000804-422881fwd/TA/Ggactcaaaaaaaaaaattaaataaataaagacgaacttaagtaaaacaaatttatttggt09/02/0010/10/0386Genomic99 %
ss1928274KWOK|OVLP-000925-679736fwd/TA/Ggactcaaaaaaaaaaattaaataaataaagacgaacttaagtaaaacaaatttatttggt10/06/0010/10/0387Genomic99 %
ss4113149SC_JCM|AC011195.6_126798rev/BC/Taccaaataaatttgttttacttaagttcgtctttatttatttaatttttttttttgagtc10/15/0110/10/03101Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs831952|allelePos=1003|totalLen=1564|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130
 ACTAAACTAA TTGGAAACCA GGGTTGTTTA AAGTAAGTGT CACTGACTCC AGAGAGAGTT
 GAACAACATC ACTATGACCC TGGGGTGTGT GATTTCCAGC CAGACGAATG AAATGAATTG
 ACTTTAGCAC AAATTACTGG AAGAAGAGTG TGTGTGTGTT TGTATATATG TTcatacaca
 tatatgtata tataatatat tcatacacat atacgtatat ataatatatt catacatata
 tgtatatgta ttcatgcaca cataggtata tatgtattca tgcatatata tgcatataca
 catatattcg tgcatgtgta tacatacata catatattca tacatacaca CACACATGCT
 GAGTTTTAAA GAACTTAAGT AAAACAggcc gagtgtggtg ggtcacgcct gtaatcctag
 cactttggga ggccaaggtg ggcggatcac ttgaggtcag gagttcgaga gcagcctggc
 caacatggtg aaaccccgtc tctactaaaa atacataaat tagccgggcg tggtggcggg
 cacctgtaat cccagctact tgggaggtgg aagctcaata atagcttgaa cagctgggtg
 cggtggctca cacctgtaat cccagcgctt tgggaggcca aggcaggcag atcacgaggt
 caggagatcg agaccatcct ggctaacatg gtgacacccc gtctctacta aaaatacaaa
 aaattagccg ggcgtggtgg cgggcgccta tagtcccagc tactcgggag gctgaggcag
 gaaaatggcg tgaacccagg aagcagagct tgcagtgaga ggagatcgcg ccactgcagt
 ccagcctggg cgatagagca agactccgtc tcaaaaaaaa aaaaaaagaa tcactcgaac
 ccaggaggca gaagttgcag tgagctgaga tggcaccact gcactccagc cttggcaaca
 gagtgagatt ctgactcaaa aaaaaaaatt aaataaataa ag
 R
 acgaaCTTAA GTAAAACAAA TTTATTTGGT GTGTGGGaat tttttttcaa tttttaaaaa
 attgattaaa attttttttG GTTTAAATTT AGTTAGGTAT TATAAGTAAG GGAATTACTA
 AAAGGGCAAT AAtttttttt tctttctttt ttttttttga gatggagttt cactcttgtt
 gcccaggcta gatagagtgc agtggcgtga tctcgactca ctgcaaactc cacctcctgg
 gttcaagcga tcctcctgtc tcagcctcct gagtagctgg gattacaggt gcccaccacc
 atgcccagct aattttttat atttttagta gagatggggt ttcaccatgt tggccaggct
 ggtcttgaac tcctgacctc aggtcatcca cccacctcag cctcccaaag tactgggatt
 ataggtgtaa gtcaccactc ccagccAATA TATGTTTTTC ACGACAGACT AGTATATCAG
 TTTTAGTTTT TTTTTGTTTT TTTTTTTTCC TGTGGATAAA TGGTAGCACT AATCCACAAC
 TTTGAAGTCA GTTCTCCTGG A

  GeneView back to top
GeneView via analysis of contig annotation: TEX14 testis expressed 14
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label
Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_010783->NM_031272
function
referenceNT_010783->NM_198393
function
"
Group
label
Contig-->mRNA-->ProteinContig
position
mRNA
orientation
mRNA
pos
FunctiondbSNP
allele
Protein
residue
Codon
pos
Amino acid
pos
referenceNT_010783->NM_031272->NP_11256215322861reverseintron
referenceNT_010783->NM_198393->NP_93820715322861reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs831952 maps exactly once on NCBI human chromosome 17
ChromosomeContig
accession
Contig
position
Chromosome
position
Hit
orientation
Contig
Allele
Assembly
Type
Group
label
Contig
label
Neighbor
SNP
SNP_flank
position
17NW_001838448.11189785852029878minusTalt_assembly_8HuRefHuRefview1002
17NW_926894.11106240553131383minusTalt_assembly_1CeleraCeleraview1002
17NT_010783.141532286154024582minusTref_assemblyreferencereferenceview1002

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
AC011195.5 AC021455 AC021455.3
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .