Biology Department
Publications in 2002
Biology Pubs in:  2008  2007  2006  2005  2004  2003  2002  2001
Publications 2002 in pdf format

Baniecki, M. L., McGrath, W. J., Dauter, Z., and Mangel, W. F.   Adenovirus proteinase: Crystallization and preliminary X-ray diffraction studies to atomic resolution.   Acta Crystallographica Section D: Biological Crystallography D58(Pt. 9): 1462-1464 (September, 2002).

Behrouzian, B., Hodgson, D., Savile, C. K., Dawson, B., Buist, P. H., and Shanklin, J.   Use of 19F NMR spectroscopy to probe enzymatic oxidation of fluorine-tagged sulfides.   Magnetic Resonance in Chemistry 40(8): 524-528 (August, 2002).

Behrouzian B., Savile, C. K., Dawson, B., Buist, P. H., and Shanklin, J.   Exploring the hydroxylation-dehydrogenation connection: Novel catalytic activity of castor stearoyl- ACP delta-9 desaturase.   Journal of American Chemical Society 124(13): 3277-3283 (April, 2002).

Broadwater, J. A., Whittle, E., and Shanklin, J.   Desaturation and hydroxylation: Residues 148 and 324 of Arabidopsis FAD2, in addition to substrate chain length, exert a major influence in partitioning of catalytic specificity.   Journal of Biological Chemistry 277(18): 15613-15620 (May, 2002).

Brown, M. T., McBride, K. M., Baniecki, M. L., Reich, N. C., Marriott, G., and Mangel, W. F.   Actin can act as a cofactor for a viral proteinase in the cleavage of cytoskeleton.   Journal of Biological Chemistry 277(48): 46298-46303 (November, 2002).

Bulavin, D. V., Demidov, O. N., Saito, S., Kauraniemi, P., Phillips, C., Amundson, S. A., Ambrozino, C., Sauter, G., Nebreda, A. R., Anderson, C. W., Kallioniemi, A., Fornace, Jr., A. J., and Appella, E.   Amplification of PPM1D in human tumors abrogates p53 tumor-suppressor activity.   Nature Genetics 31: 210-215 (June, 2002).

Burr, B.   Mapping and sequencing the rice genome.   The Plant Cell 14(3): 521-523 (March, 2002).

Chance, M. R., Bresnick, A. R., Burley, S. K., Jiang, J. S., Lima, C. D., Sali, A., Almo, S. C., Bonanno, J. B., Buglino, J. A., Boulton, S., Chen, H., Eswar, N., He, G., Huang, R., Ilyin, V., McMahan, L., Pieper, U., Ray, S., Vidal, M., and Wang, L. K.   Structural genomics: A pipeline for providing structures for the biologist.   Protein Science 11(4): 723-738 (April, 2002).

Deaconescu, A. M., Roll-Mecak, A., Bonanno, J. B., Gerchman, S. E., Kycia, H., Studier, F. W., and Burley, S. K.   X-ray structure of Saccharomyces cerevisiae homologous mitochrondrial matrix factor 1 (Hmf1).   Proteins: Structure, Function and Genetics 48(2): 431-436 (August, 2002).

Dunn, J. J., McCorkle, S. R., Praissman, L. A., Hind, G., van der Lelie, D., Bahou, W. F., Gnatenko, D. V., and Krause, M. K.   Genomic signature tags (GSTs): A new system for profiling genomic DNA.   Genome Research 12(11):1756-1765 (November, 2002).

Eswaramoorthy, S., Kumaran, D., and Swaminathan, S.   A novel mechanism for Clostridium botulinum neurotoxin inhibition.   Biochemistry 41(31): 9795-9802 (August, 2002).

Flanagan, J. M. and Bewley, M. C.   Protein quality control in bacterial cells: Integrated networks of chaperones and ATP-dependent proteases.   Genetic Engineering: Principles and Methods, J. K. Setlow, Editor, Vol. 24, pp. 17-47, Kluwer Academic/Plenum Publishers, NY (October, 2002).

Fu, D., Libson, A., and Stroud, R.   The structure of GlpF, a glycerol conducting channel.   Ion Channels: From Atomic Resolution Physiology to Functional Genomics,   Novartis Foundation Symposium No. 245, pp. 51-61; discussion, pp. 61-65 and 165-168, John Wiley & Sons Ltd., Chichester, UK (2002).

Georgakilas, A. G., Bennett, P. V., and Sutherland, B. M.   High efficiency detection of bi-stranded abasic clusters in lambda-irradiated DNA by putrescine.   Nucleic Acids Research 30(13): 2800-2808 (July, 2002).

Gilboa, R., Zharkov, D. O., Golan, G., Fernandes, A. S., Gerchman, S. E., Matz, E., Kycia, J. H., Grollman, A. P., and Shoham, G.   Structure of a formamidopyrimidine DNA glycosylase-DNA complex.   Journal of Biological Chemistry 277(22): 19811-19816 (May, 2002).

Hainfeld, J. F. and Powell, R. D.   Silver- and gold-based autometallography of nanogold.   Advances in Pathology, Microscopy & Molecular Morphology Series: Gold and Silver Staining: Techniques in Molecular Morphology, G. W. Hacker and J. Gu, Editors, Chapter 3, pp. 29-46, CRC Press LLC, Boca Raton, FL (2002).

Hainfeld, J. F., Powell, R. D., and Furuya, F. R.   Microscopic uses of nanogold.   Advances in Pathology, Microscopy & Molecular Morphology Series: Gold and Silver Staining: Techniques in Molecular Morphology, G. W. Hacker and J. Gu, Editors, Chapter 6, pp. 85-106, CRC Press LLC, Boca Raton, FL (2002).

Heroux, A., Robinson, H., Skinner, J., Cowan, M., Bosshard, H., Nolan, B., and Sweet, R.   Software to manage the synchrotron experience: Experimental control and a database.   Acta Crystallographica A58 (Supplement): C70 (August, 2002).

Hou, M.-H., Robinson, H., Gao, Y. G., and Wang, A. H. J.  Crystal structure of Actinomycin D bound to the CTG triplet repeat sequences linked to neurological diseases.   Nucleic Acids Research 30(22): 4910-4917 (November, 2002).

Jarnik, M., de Viragh, P. A., Scharer, E., Bundman, D., Simon, M. N., Roop, D. R., and Steven, A. C.   Quasi-normal cornified cell envelopes in loricrin backup system.   Journal of Investigative Dermatology 118(1): 102-109 (January, 2002).

Klon, A., Heroux, A., Ross, L., Pathak, V., Johnson, C., Piper, J., and Borhani, D.   Atomic structures of human dihydrofolate reductase complexed with NADPH and two lipophilic antifolates at 1.09 Å and 1.05 Å resolution.   Journal of Molecular Biology 320(3): 677-693 (July, 2002).

Lashuel, H. A., Petre, B. M., Wall, J., Simon, M., Nowak, R. J., Walz, T., and Lansbury, P. T.   Alpha-synuclein, especially the Parkinson's disease-associated mutants, forms pore-like annular and tubular protofibrils.   Journal of Molecular Biology 322(5): 1089- 1102 (October, 2002).

Lodewyckx, C., Vangronsveld, J., Porteous, F., Moore, E. R. B., Taghavi, S., Mezgeay, M., and van der Lelie, D.   Endophytic bacteria and their potential applications.   Critical Reviews in Plant Sciences 21(6): 583-606 (November, 2002).

Luft, B. J., Dunn, J. J., and Lawson, C. L.   Approaches toward the directed design of a vaccine against Borrelia burgdorferi.   Journal of Infectious Diseases 185(4 Suppl 1): S46-S51 (February, 2002).

Mauser, A., Saito, S., Appella, E., Anderson, C. W., Seaman, W. T., and Kenney, S.   The Epstein-Barr virus immediate-early protein BZLF1 regulates p53 function through multiple mechanisms.   Journal of Virology 76(24): 12503-12512 (December, 2002).

McGrath, W. J. Aherne, K. S., and Mangel, W. F.   In the virion, the 11-amino-acid peptide cofactor pVIc is covalently linked to the adenovirus proteinase.   Virology 296(2): 234-240 (May, 2002).

Mosesson, M. W., Siebenlist, K. R., Hernandez, I., Wall, J. S., and Hainfeld, J. F.   Fibrinogen assembly and crosslinking on a fibrin fragment E template.   Thrombosis and Haemostasis 87: 651-658 (April, 2002).

Powell, R. D. and Hainfeld, J. F.   Combined fluorescent and gold probes for microscopic and morphological investigators.   Advances in Pathology, Microscopy & Molecular Morphology Series: Gold and Silver Staining: Techniques in Molecular Morphology, G. W. Hacker and J. Gu, Editors, Chapter 7, pp. 107-118, CRC Press LLC, Boca Raton, FL (2002).

Rithidech, K., Dunn, J. J., Roe, B. A., Gordon, C. R., and Cronkite, E. P.   Evidence for two commonly deleted regions on mouse chromosome 2 in gamma ray-induced acute myeloid leukemic cells.   Experimental Hematology 30(6): 564-570 (June, 2002).

Rodi, D. J., Soares, A. S., and Makowski, L.   Quantitative assessment of peptide sequence diversity in M13 combinatorial peptide phage display libraries.   Journal of Molecular Biology 322(5): 1039-1052 (October, 2002).

Saito, S., Goodarzi, A. A., Hagashimoto, Y., Noda, Y., Lees-Miller, S. P., Appella, E., and Anderson, C. W.   ATM mediates phosphorylation at multiple p53 sites, including Ser46, in response to ionizing radiation.   Journal of Biological Chemistry 277(15): 12491-12494 (April, 2002).

Sanghani, P. C., Robinson, H., Bosron, W. F., and Hurley, T. D.   Human glutathione- dependent formaldehyde dehydrogenase. Structures of apo, binary, and inhibitory ternary complexes.   Biochemistry 41(35): 10778-10786 (September, 2002).

Schwitzguebel, J.-P., van der Lelie, D., Baker, A., Glass, D. J., and Vangronsveld, J.   Phytoremediation: European and American trends, successes, obstacles and needs.   Journal of Soils and Sediments 2(2): 91-99 (2002).

Setlow, J. K., Editor,   Genetic Engineering: Principles and Methods, Vol. 24, 267 p., Kluwer Academic/Plenum Publishers, NY (October, 2002).

Setlow, R. B.   Shedding light on proteins, nucleic acids, cells, humans and fish.   Mutation Research/Reviews in Mutation Research 511(1): 1-14 (March, 2002).

Setlow, R. B., co-author,   National Research Council Prepublication Report "Factors Affecting the Utilization of the International Space Station for Research in the Biological and Physical Sciences" (September, 2002).

Singh, S. K., Kurasov, O. V., Chen, B., Robinson, H., Grishin, N.V., Osterman, A.L., and Zhang, H.   Crystal structure of Haemophilis influenzae NadR protein. A bifunctional enzyme endowed with NMN adenyltransferase and ribosylnicotinimide kinase activities.   Journal of Biological Chemistry 277(36): 33291-33299 (September, 2002).

Snellinx, Z., Nepovim, A., Taghavi, S., Vangronsveld, J., Vanek, T., and van der Lelie, D.   Biological remediation of explosives and related nitroaromatic compounds.   Environmental Science Pollution Research International 9(1): 48-61, Review (2002).

Song, J. M., Milligan, J. R., and Sutherland, B. M.   Bistranded oxidized purine damage clusters: Induced in DNA by long-wavelength ultraviolet (290-400 nm) radiation?   Biochemistry 41(27): 8683-8688 (July, 2002).

Sutherland, B. M., Bennett, P. V., Cintron-Torres, N., Hada, M., Trunk, J., Monteleone, D., Sutherland, J. C., Laval, J., Stanislaus, M., and Gewirtz, A.   Clustered DNA damages induced in human hematopoietic cells by low doses of ionizing radiation.   Journal of Radiation Research (Tokyo) 43 Suppl: S149-S152 (December, 2002).

Sutherland, B. M., Bennett, P. V., Sutherland, J. C., and Laval, J.   Clustered DNA damages induced by X-rays in human cells.   Radiation Research 157: 611-616 (June, 2002).

Sutherland, B. M., Hacham, H., Bennett, P., Sutherland, J. C., Moran, M., and Gange, R. W.   Repair of cyclobutyl pyrimidine dimmers in human skin: Variability among normal humans in nucleotide excision and in photorepair.   Photodermatology, Photoimmunology, and Photomedicine 18: 109-116 (June, 2002).

Sutherland, J. C.   Simultaneous measurement of circular dichroism and fluorescence polarization anisotropy.   Clinical Diagnostic Systems: Technology and Instrumentation, G. E. Cohn, Editor, Proceedings of SPIE, Vol. 4625, pp. 126-136 (June, 2002).

Sutherland, J. C.   Biological effects of polychromatic light.   Photochemistry and Photobiology 76(2): 164-170 (August, 2002).

Sutherland, J. C.   Meeting Reports: NSLS 2002 Annual Users' Meeting Workshop – X-ray Resources for Studies of Ultrafast Processes.   Synchrotron Radiation News 15(5): 12-13 (September/October, 2002).

Swaminathan, S. and Eswaramoorthy, S.   Crystal structure of clostridium botulinum neurotoxin serotype B.   Scientific and Therapeutic Aspects of Botulinum Toxin, M.F. Brin, M. Hallett, and J. Jankovic, Editors, Chapter 3, pp. 29-39, Lippincott Williams & Wilkins, Philadelphia, PA (2002).

Takai, H., Naka, K., Okada, Y., Watanabe, M., Harada, N., Saito, S., Anderson, C., W., Appella, E., Nakanishi, M., Suzuki, H., Nagashima, K., Sawa, H., Ikeda, K., and Motoyama, N.   Chk2-deficient mice exhibit radioresistance and defective p53-mediated transcription.   EMBO Journal 21(19): 5195-5205 (October, 2002).

Tubbs, R. R., Pettay, J., Grogan, T., Cheung, A. L. M., Powell, R. D., Hainfeld, J., Hauser-Kronberger, C., and Hacker, G. W.   Supersensitive in situ hybridization by tyramide signal amplification and nanogold® silver staining: The contribution of autometallography and catalyzed reporter deposition to the rejuvenation of in situ hybridization.   Advances in Pathology, Microscopy & Molecular Morphology Series: Gold and Silver Staining: Techniques in Molecular Morphology, G. W. Hacker and J. Gu, Editors, Chapter 9, pp. 127-144, CRC Press LLC, Boca Raton, FL (2002).

Tubbs, R., Pettay, J., Skacel, M., Powell, R., Stoler, M., Roche, P., and Hainfeld, J.   Gold-facilitated in situ hybridization: A bright-field autometallographic alternative to fluorescence in situ hybridization for detection of her-2/neu gene amplification.   American Journal of Pathology 160(5): 1589-1595 (May, 2002).

Walters, R. W., Freimuth, P., Moninger, T. O., Ganske, I., Zabner, J., and Welsh, M. J.   Adenovirus fiber disrupts CAR-mediated intercellular adhesion allowing virus escape.   Cell 110: 789-799 (September, 2002).

Watts, N. R., Jones, L. N., Cheng, N., Wall, J. S., Parry, D. A., and Steven, A. C.   Cryo- electron microscopy of trichocyte (hard alpha-keratin) intermediate filaments reveals a low-density core.   Journal of Structural Biology 137(1-2): 109-118 (January/February, 2002).

Wu, Z., Earle, J., Saito, S., Anderson, C. W., Appella, E., and Xu, Y.   Mutation of mouse p53 Ser23 and the response to DNA damage.   Molecular Cellular Biology 22(8): 2441-2449 (April, 2002).

Xiao, S., Liu, F., Rosen, A. E., Hainfeld, J. F., Seeman, N. C., Musier-Forsyth, K., and Kiehl, R. A.   Selfassembly of metallic nanoparticle arrays by DNA scaffolding.   Journal of Nanoparticle Research 4(4): 313-317 (August, 2002).

Zharkov, D. O., Golan, G., Gilboa, R., Fernandes, A. S., Gerchman, S. E., Kycia, J. H., Rieger, R. A., Grollman, A. P., and Shoham, G.   Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate.   EMBO Journal 21(4): 789-800 (February, 2002).

Formal Report: J. J. Dunn and D. van der Lelie (2002).   Diversity, Structure, and Functional Interdependence of Microbial Communities in the Plant Rhizosphere.  Formal Report BNL-52655.

Informal Report: D. van der Lelie and J. J. Dunn (2002).   An Integrated Functional Genomics Consortium to Increase Carbon Sequestration in Poplars: The Poplar-Mycorrhizal Symbiosis as a System to Imrpove Terrestrial Carbon Sequestration.  Informal Report: BNL-69188.

Updated 22 April 2008 Security Notice   Webteam   Site Map   Biology   BNL