R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|6017108|gb|AAF01591.1|AC009895_12 (AC009895) unknown protein [Arabidopsis
thaliana]
Length = 417
Frame -1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 417
0 150 300
Minus Strand HSPs:
Score = 218 (76.7 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 45/63 (71%), Positives = 52/63 (82%), Frame = -1
Query: 201 LLQLLRESPYSRPKAEPDILENIVCDIISQIDGDDQSGRAKKMLAEMVQVSMEQSLRHLQ 22
LL LLR S R + +PD +ENIV +IS IDGDDQSG+AKKMLAEMVQVSME+SLRHLQ
Sbjct: 349 LLCLLRNSESPRSEVQPDTIENIVSSLISHIDGDDQSGKAKKMLAEMVQVSMEKSLRHLQ 408
Query: 21 QRA 13
+RA
Sbjct: 409 ERA 411
>gi|7487275|pir||T06629 hypothetical protein T20K18.60 - Arabidopsis thaliana
>gi|4586247|emb|CAB40988.1| (AL049640) putative protein
[Arabidopsis thaliana] >gi|7267972|emb|CAB78313.1| (AL161534)
putative protein [Arabidopsis thaliana]
Length = 402
Frame -1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 402
0 150 300
Minus Strand HSPs:
Score = 119 (41.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/66 (43%), Positives = 42/66 (63%), Frame = -1
Query: 201 LLQLLRESPYSRPKAEPDILENIVCDIISQIDGDDQSGR-AKKMLAEMVQVSMEQSLRHL 25
LL LLRE+P + + P LE IV I Q+DG +++ AKK+L +MV SME S++ +
Sbjct: 325 LLDLLRETPREK-EMTPLTLEKIVYGIAVQVDGAEKAAETAKKLLQDMVHRSMELSMKSI 383
Query: 24 QQRALVC 4
Q +A C
Sbjct: 384 QHKAASC 390
>gi|37256|emb|CAA68681.1| (Y00672) tpr gene product (539 is 1st base in codon)
[Homo sapiens]
Length = 142
Frame -1 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | 142
0 50 100
Minus Strand HSPs:
Score = 67 (23.6 bits), Expect = 0.73, P = 0.52
Identities = 22/63 (34%), Positives = 34/63 (53%), Frame = -1
Query: 201 LLQLLRESPYSR-PKAEPDILENIVCDIISQIDGDDQSGRAKKMLAEMVQ--VSMEQSLR 31
L Q+L + ++ PK+ + LE + D S+IDG GR +K E Q +E+ L
Sbjct: 5 LQQVLERTELNKLPKSVQNKLEKFLADRQSEIDG--LKGRHEKFKVESEQQYFEIEKRLS 62
Query: 30 HLQQR 16
H Q+R
Sbjct: 63 HSQER 67
>gi|3298091|dbj|BAA31346.1| (AB010093) interleukin 2 precursor [Cavia
porcellus]
Length = 152
Frame -1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
Minus Strand HSPs:
Score = 66 (23.2 bits), Expect = 1.1, P = 0.68
Identities = 21/63 (33%), Positives = 32/63 (50%), Frame = -1
Query: 204 TLLQLLRESPYSR-PKAEPDILENIVCDIISQIDGDDQSGRAKKMLA-EMVQVSMEQSLR 31
TL L +P S PK D LE ++ D+ + ++G + R KML ++ M L+
Sbjct: 13 TLALLTSSAPTSSSPKQTQDRLELLLRDLQTLLEGVTSNPRLPKMLKLKLYPPKMVSELQ 72
Query: 30 HLQ 22
HLQ
Sbjct: 73 HLQ 75
>gi|125881|sp|P18487|L2CS_DROME PROTEIN CS >gi|85024|pir||S01105 hypothetical
protein 4 - fruit fly (Drosophila melanogaster)
>gi|7763|emb|CAA29408.1| (X05991) Cs [Drosophila melanogaster]
Length = 245
Frame -1 hits (HSPs): ______
Frame -2 hits (HSPs): ____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 245
0 50 100 150 200
__________________
Annotated Domains:
PRODOM PD188322: L2CS(1) O96568(1) O96570(1) 1..217
PRODOM PD119338: L2CS_DROME 219..244
__________________
Minus Strand HSPs:
Score = 48 (16.9 bits), Expect = 1.5, Sum P(2) = 0.79
Identities = 11/29 (37%), Positives = 18/29 (62%), Frame = -1
Query: 168 RPKAEPDILENIVCDIISQIDGDD-QSGR 85
RP+ P L+N+V D+I +D Q+G+
Sbjct: 129 RPRYVPTGLDNVVDDLIQNMDKAQLQTGK 157
Score = 37 (13.0 bits), Expect = 1.5, Sum P(2) = 0.79
Identities = 7/17 (41%), Positives = 8/17 (47%), Frame = -2
Query: 77 RCWLRWSKSAWSRV*DI 27
RCWL + W DI
Sbjct: 210 RCWLSRNLGLWQSPQDI 226
>gi|116723|sp|P05399|COAT_CERV PROBABLE COAT PROTEIN >gi|75486|pir||VCCVCE coat
protein - carnation etched ring virus >gi|58862|emb|CAA28359.1|
(X04658) pot. ORF 4 (AA 1-494) [Carnation etched ring virus]
>gi|225355|prf||1301227D ORF 4 [Carnation etched ring virus]
Length = 494
Frame -1 hits (HSPs): __ ______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 494
0 150 300 450
__________________
Annotated Domains:
DOMO DM03741: CAULIFLOWERMOSAICVIRUSCOATPROTE 57..478
Entrez Zinc finger region: POTENTIAL. 420..433
PRINTS CAULIMOCOAT1: Caulimovirus coat protein 142..155
PRINTS CAULIMOCOAT2: Caulimovirus coat protein 163..179
PRINTS CAULIMOCOAT3: Caulimovirus coat protein 198..209
PRINTS CAULIMOCOAT4: Caulimovirus coat protein 222..231
PRINTS CAULIMOCOAT5: Caulimovirus coat protein 257..273
PRINTS CAULIMOCOAT6: Caulimovirus coat protein 355..368
PRINTS CAULIMOCOAT7: Caulimovirus coat protein 411..423
PRINTS C2HCZNFINGER1: C2HC-type zinc finger mot 418..427
PRINTS CAULIMOCOAT8: Caulimovirus coat protein 423..436
PRINTS C2HCZNFINGER2: C2HC-type zinc finger mot 427..435
PRODOM PD133098: COAT_CERV 1..140
PRODOM PD005896: COAT(8) 142..361
PRODOM PD003789: COAT(8) POL(2) 392..465
PRODOM PD057383: COAT_CERV 467..493
__________________
Minus Strand HSPs:
Score = 50 (17.6 bits), Expect = 1.6, Sum P(2) = 0.79
Identities = 14/43 (32%), Positives = 22/43 (51%), Frame = -1
Query: 150 DILENIVCDIISQIDGDDQSGRAKKMLAEMVQVSMEQSLRHLQ 22
DIL N+V + + G+D +G +K L E + L +LQ
Sbjct: 218 DILLNVVSGLYTMFLGEDYTGNQEKTL-EQERAKASLRLINLQ 259
Score = 42 (14.8 bits), Expect = 1.6, Sum P(2) = 0.79
Identities = 8/13 (61%), Positives = 9/13 (69%), Frame = -1
Query: 183 ESPYSRPKAEPDI 145
ES RPK EPD+
Sbjct: 115 ESSNKRPKREPDL 127
>gi|384327|prf||1905414B albumin 2S [Bertholletia excelsa]
Length = 145
Frame -1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 145
0 50 100
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 2.2, P = 0.89
Identities = 22/63 (34%), Positives = 38/63 (60%), Frame = -1
Query: 195 QLLRESPY-SRPKA--EPDILENIVCDIISQIDGDDQSGRAK--KMLAEMVQVSMEQSLR 31
Q+++ESPY + P+ EP + E C+ Q++G D+S R + +M+ M+Q E R
Sbjct: 58 QMMKESPYQTMPRRGMEPHMSE--CCE---QLEGMDESCRCEGLRMMMRMMQ-QQEMQPR 111
Query: 30 HLQQRALV 7
Q R ++
Sbjct: 112 GEQMRMMM 119
>gi|7297782|gb|AAF53032.1| (AE003630) CG14069 gene product [Drosophila
melanogaster]
Length = 101
Frame -2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | || 101
0 20 40 60 80 100
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 2.6, P = 0.93
Identities = 14/41 (34%), Positives = 20/41 (48%), Frame = -2
Query: 173 IQDLKLNLTFLRT*CVTSYHRLMGMIN--LVE-QRRCWLRW 60
+Q KL + T C T +G+ L+E Q+RCW W
Sbjct: 50 LQQQKLRIPLQNTGCATILSNQLGVTGEMLLEIQKRCWAGW 90
>gi|6330102|dbj|BAA86467.1| (AB032979) KIAA1153 protein [Homo sapiens]
Length = 424
Frame -1 hits (HSPs): ________
Frame -3 hits (HSPs): __
__________________________________________________
Database sequence: | | | | 424
0 150 300
Minus Strand HSPs:
Score = 56 (19.7 bits), Expect = 3.4, Sum P(2) = 0.97
Identities = 17/61 (27%), Positives = 28/61 (45%), Frame = -1
Query: 189 LRESPYSRPKAEPDILENIVCDIISQIDGDDQSGRAKKMLAEMVQVSMEQSLRHLQQRAL 10
+ E+P S + + +E I D + G + G K + E + EQ RHL+ AL
Sbjct: 330 MAEAPESNHPEDQETMETISQD--PEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEAAAL 387
Query: 9 V 7
+
Sbjct: 388 L 388
Score = 31 (10.9 bits), Expect = 3.4, Sum P(2) = 0.97
Identities = 6/11 (54%), Positives = 7/11 (63%), Frame = -3
Query: 199 FAVTKRVSIFK 167
F V KR +FK
Sbjct: 49 FVVLKREDVFK 59
>gi|5834567|emb|CAB55274.1| (AL035461) dJ967N21.3 (novel protein similar to
predicted worm, yeast and plant proteins) [Homo sapiens]
Length = 497
Frame -1 hits (HSPs): _______
Frame -3 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 497
0 150 300 450
Minus Strand HSPs:
Score = 56 (19.7 bits), Expect = 4.9, Sum P(2) = 0.99
Identities = 17/61 (27%), Positives = 28/61 (45%), Frame = -1
Query: 189 LRESPYSRPKAEPDILENIVCDIISQIDGDDQSGRAKKMLAEMVQVSMEQSLRHLQQRAL 10
+ E+P S + + +E I D + G + G K + E + EQ RHL+ AL
Sbjct: 306 MAEAPESNHPEDQETMETISQD--PEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEAAAL 363
Query: 9 V 7
+
Sbjct: 364 L 364
Score = 31 (10.9 bits), Expect = 4.9, Sum P(2) = 0.99
Identities = 6/11 (54%), Positives = 7/11 (63%), Frame = -3
Query: 199 FAVTKRVSIFK 167
F V KR +FK
Sbjct: 25 FVVLKREDVFK 35
>gi|37405|emb|CAA44719.1| (X62947) 55 kd protein [Homo sapiens]
Length = 503
Frame -1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 503
0 150 300 450
Minus Strand HSPs:
Score = 67 (23.6 bits), Expect = 5.9, P = 1.0
Identities = 22/63 (34%), Positives = 34/63 (53%), Frame = -1
Query: 201 LLQLLRESPYSR-PKAEPDILENIVCDIISQIDGDDQSGRAKKMLAEMVQ--VSMEQSLR 31
L Q+L + ++ PK+ + LE + D S+IDG GR +K E Q +E+ L
Sbjct: 5 LQQVLERTELNKLPKSVQNKLEKFLADRQSEIDG--LKGRHEKFKVESEQQYFEIEKRLS 62
Query: 30 HLQQR 16
H Q+R
Sbjct: 63 HSQER 67
>gi|625086|gb|AAA92686.1| (U19348) tpr-met fusion protein [Homo sapiens]
Length = 523
Frame -1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 523
0 150 300 450
Minus Strand HSPs:
Score = 67 (23.6 bits), Expect = 6.2, P = 1.0
Identities = 22/63 (34%), Positives = 34/63 (53%), Frame = -1
Query: 201 LLQLLRESPYSR-PKAEPDILENIVCDIISQIDGDDQSGRAKKMLAEMVQ--VSMEQSLR 31
L Q+L + ++ PK+ + LE + D S+IDG GR +K E Q +E+ L
Sbjct: 5 LQQVLERTELNKLPKSVQNKLEKFLADQQSEIDG--LKGRHEKFKVESEQQYFEIEKRLS 62
Query: 30 HLQQR 16
H Q+R
Sbjct: 63 HSQER 67
>gi|6469527|gb|AAF13321.1| (AF112543) envelope glycoprotein [Human
immunodeficiency virus type 1]
Length = 837
Frame -1 hits (HSPs): __
Frame -2 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | | 837
0 150 300 450 600 750
Minus Strand HSPs:
Score = 51 (18.0 bits), Expect = 7.6, Sum P(2) = 1.0
Identities = 9/19 (47%), Positives = 15/19 (78%), Frame = -2
Query: 143 LRT*CVTSYHRLMGMINLV 87
LR+ C+ SYHRL ++++V
Sbjct: 741 LRSLCLFSYHRLRDLLSIV 759
Score = 39 (13.7 bits), Expect = 7.6, Sum P(2) = 1.0
Identities = 9/21 (42%), Positives = 12/21 (57%), Frame = -1
Query: 201 LLQLLRESPYSRPKAEPDILE 139
+ LL ES + K E D+LE
Sbjct: 623 IYSLLEESQNQQEKNEQDLLE 643
>gi|37258|emb|CAA44819.1| (X63105) Tpr [Homo sapiens]
Length = 726
Frame -1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 726
0 150 300 450 600
Minus Strand HSPs:
Score = 67 (23.6 bits), Expect = 9.1, P = 1.0
Identities = 22/63 (34%), Positives = 34/63 (53%), Frame = -1
Query: 201 LLQLLRESPYSR-PKAEPDILENIVCDIISQIDGDDQSGRAKKMLAEMVQ--VSMEQSLR 31
L Q+L + ++ PK+ + LE + D S+IDG GR +K E Q +E+ L
Sbjct: 5 LQQVLERTELNKLPKSVQNKLEKFLADQQSEIDG--LKGRHEKFKVESEQQYFEIEKRLS 62
Query: 30 HLQQR 16
H Q+R
Sbjct: 63 HSQER 67
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.96
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.344 0.147 0.494
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.335 0.137 0.467
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.368 0.166 0.594
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.319 0.133 0.365
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.352 0.153 0.576
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.384 0.170 0.740
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 67 66 10. 57 3 12 22 0.11 30
27 0.096 31
+2 0 67 66 10. 57 3 12 22 0.11 30
27 0.096 31
+1 0 68 67 10. 57 3 12 22 0.12 30
27 0.10 31
-1 0 68 67 10. 57 3 12 22 0.12 30
27 0.10 31
-2 0 67 67 10. 57 3 12 22 0.12 30
27 0.10 31
-3 0 67 66 10. 57 3 12 22 0.11 30
27 0.096 31
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 14
No. of states in DFA: 585 (58 KB)
Total size of DFA: 118 KB (128 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 85.79u 1.19s 86.98t Elapsed: 00:00:23
Total cpu time: 85.83u 1.22s 87.05t Elapsed: 00:00:23
Start: Thu Feb 15 00:32:03 2001 End: Thu Feb 15 00:32:26 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000