BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= FN0926
(259 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19704261|ref|NP_603823.1| GTP pyrophosphokinase [Fusobac... 474 e-132
gi|148323450|gb|EDK88700.1| hypothetical protein FNP_0900 [... 469 e-131
gi|85858629|ref|YP_460831.1| relA / spoT related protein [S... 201 2e-50
gi|10956378|ref|NP_052827.1| hypothetical protein pxo1_131 ... 179 1e-43
gi|56459757|ref|YP_155038.1| hypothetical protein IL0648 [I... 175 2e-42
gi|153938129|ref|YP_001390937.1| RelA/SpoT domain protein [... 159 1e-37
gi|90577881|ref|ZP_01233692.1| hypothetical protein VAS14_1... 156 9e-37
gi|148379560|ref|YP_001254101.1| GTP pyrophosphatase [Clost... 155 2e-36
gi|18310587|ref|NP_562521.1| hypothetical protein CPE1605 [... 154 6e-36
gi|110800709|ref|YP_696292.1| GTP pyrophosphokinase-like pr... 150 9e-35
gi|110803827|ref|YP_698891.1| GTP pyrophosphokinase-like pr... 149 2e-34
gi|34763831|ref|ZP_00144740.1| GTP pyrophosphokinase [Fusob... 146 1e-33
gi|89075650|ref|ZP_01162051.1| hypothetical protein SKA34_0... 145 2e-33
gi|150016192|ref|YP_001308446.1| RelA/SpoT domain protein [... 140 6e-32
gi|118580701|ref|YP_901951.1| RelA/SpoT domain protein [Pel... 99 2e-19
gi|34765036|ref|ZP_00145336.1| GTP pyrophosphokinase [Fusob... 96 2e-18
gi|28868077|ref|NP_790696.1| hypothetical protein PSPTO_085... 91 6e-17
gi|53718773|ref|YP_107759.1| hypothetical protein BPSL1138 ... 80 1e-13
gi|68553358|ref|ZP_00592735.1| RelA/SpoT [Prosthecochloris ... 59 2e-07
gi|94985528|ref|YP_604892.1| RelA/SpoT [Deinococcus geother... 59 4e-07
gi|156865437|gb|EDO58868.1| hypothetical protein CLOL250_00... 57 7e-07
gi|119714541|ref|YP_921506.1| RelA/SpoT domain protein [Noc... 57 1e-06
gi|49484710|ref|YP_041934.1| hypothetical protein SAR2586 [... 57 1e-06
gi|15925499|ref|NP_373033.1| GTP-pyrophosphokinase [Staphyl... 57 1e-06
gi|82752090|ref|YP_417831.1| hypothetical protein SAB2381c ... 57 2e-06
gi|27468970|ref|NP_765607.1| GTP-pyrophosphokinase [Staphyl... 57 2e-06
gi|70725571|ref|YP_252485.1| hypothetical protein SH0570 [S... 56 2e-06
gi|68053942|ref|ZP_00538107.1| RelA/SpoT [Exiguobacterium s... 56 3e-06
gi|89896553|ref|YP_520040.1| hypothetical protein DSY3807 [... 55 3e-06
gi|15614448|ref|NP_242751.1| hypothetical protein BH1885 [B... 55 3e-06
gi|116493391|ref|YP_805126.1| Uncharacterized protein, RelA... 55 4e-06
gi|23465967|ref|NP_696570.1| narrowly conserved hypothetica... 54 8e-06
gi|89894005|ref|YP_517492.1| hypothetical protein DSY1259 [... 54 9e-06
>gi|19704261|ref|NP_603823.1| GTP pyrophosphokinase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|19714493|gb|AAL95122.1| GTP pyrophosphokinase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 259
Score = 474 bits (1219), Expect = e-132, Method: Composition-based stats.
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MDKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPS 60
MDKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPS
Sbjct: 1 MDKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPS 60
Query: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH 120
VHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH
Sbjct: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH 120
Query: 121 EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITKTLN 180
EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITKTLN
Sbjct: 121 EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITKTLN 180
Query: 181 ISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKEN 240
ISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKEN
Sbjct: 181 ISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKEN 240
Query: 241 FGTVRDTDEVQRELDIKFK 259
FGTVRDTDEVQRELDIKFK
Sbjct: 241 FGTVRDTDEVQRELDIKFK 259
>gi|148323450|gb|EDK88700.1| hypothetical protein FNP_0900 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 259
Score = 469 bits (1208), Expect = e-131, Method: Composition-based stats.
Identities = 255/259 (98%), Positives = 257/259 (99%)
Query: 1 MDKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPS 60
M KLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIEL+PLLEKEAEY+VSKLIDVPS
Sbjct: 1 MGKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELIPLLEKEAEYIVSKLIDVPS 60
Query: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH 120
VHSVRRRVKK THLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH
Sbjct: 61 VHSVRRRVKKATHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH 120
Query: 121 EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITKTLN 180
EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITKTLN
Sbjct: 121 EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITKTLN 180
Query: 181 ISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKEN 240
ISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKEN
Sbjct: 181 ISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKEN 240
Query: 241 FGTVRDTDEVQRELDIKFK 259
FGTVRDTDEVQRELDIKFK
Sbjct: 241 FGTVRDTDEVQRELDIKFK 259
>gi|85858629|ref|YP_460831.1| relA / spoT related protein [Syntrophus aciditrophicus SB]
gi|85721720|gb|ABC76663.1| relA / spoT related protein [Syntrophus aciditrophicus SB]
Length = 407
Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats.
Identities = 104/239 (43%), Positives = 151/239 (63%), Gaps = 5/239 (2%)
Query: 8 EFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPSVHSVRRR 67
EF ++I E+ + + G+ W+ELE + + YI+ LE A Y+V+ L VHSV R
Sbjct: 89 EFLNRYNISEEAYAAAGIAWDELEEVRDHYIQTRDELEPTARYIVNILNKTEKVHSVSYR 148
Query: 68 VKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHHEILNLWD 127
+K P HLI KIIRK E I++ NY++ +TDLIGIRVLHLFK+DW ++H I W+
Sbjct: 149 IKAPEHLIAKIIRKRIGKPEGIINLANYRQKITDLIGIRVLHLFKEDWLDLHQFITRTWN 208
Query: 128 IKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITKTLNISV---E 184
+++ P +RRGD + + + K+ C + +GYRSVHYL+ I+++ +V E
Sbjct: 209 LRKEPIAYVRRGD--AAGYINSFKNWGCTIKEHPYGYRSVHYLLQSMISESAEPTVQVSE 266
Query: 185 IQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKENFGT 243
+QVRT+FEEAWS IDH +RYPY+ N ++ E L I NR+ GSADEM + + +KE T
Sbjct: 267 VQVRTLFEEAWSSIDHHVRYPYEPRNVLLNELLVILNRLSGSADEMASCILYLKEKINT 325
>gi|10956378|ref|NP_052827.1| hypothetical protein pxo1_131 [Bacillus anthracis]
gi|21392872|ref|NP_652952.1| hypothetical protein BXA0199 [Bacillus anthracis str. A2012]
gi|47566508|ref|YP_022460.1| hypothetical protein GBAA_pXO1_0199 [Bacillus anthracis str. 'Ames
Ancestor']
gi|4894347|gb|AAD32435.1| pXO1-131 [Bacillus anthracis]
gi|20520259|gb|AAM26141.1| conserved hypothetical protein, (pXO1-131) [Bacillus anthracis str.
A2012]
gi|47552323|gb|AAT35488.1| pXO1-131 [Bacillus anthracis str. 'Ames Ancestor']
Length = 349
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 111/262 (42%), Positives = 161/262 (61%), Gaps = 8/262 (3%)
Query: 3 KLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPSVH 62
+L ++EFF+ ++ID F + + WN L I+ DY+ L AE++ L P+ H
Sbjct: 2 QLNQQEFFETYNIDTQEFETAEISWNSLLEIHSDYLSYKETLIPTAEHLSMMLRTHPASH 61
Query: 63 SVRRRVKKPTHLIEKIIRKGKKYQERN----ISVLNYKEIVTDLIGIRVLHLFKDDWQNI 118
+VR RVK HLI+KIIRK + +E+N I V NYK +TDLIGIRVLHL+KD I
Sbjct: 62 TVRSRVKDAGHLIDKIIRKTIREKEKNPDYYIDVNNYKSEITDLIGIRVLHLYKDQAAPI 121
Query: 119 HHEILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITKT 178
I + WD++E + R+GDY S+ +E + + V GYRS HYL+ TK
Sbjct: 122 DKFIRDTWDLREKCTIYYRQGDY--SKQEEPKNNDLFNFKVHPFGYRSWHYLISSQATKN 179
Query: 179 LNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKK-V 237
++I+ EIQVRT+FEE WSEIDH +RYP ++++ +T+ L + NR+ GSADEM T +++ V
Sbjct: 180 VHIA-EIQVRTIFEEGWSEIDHQLRYPNNMNDVQLTKQLLVLNRVAGSADEMATVIRELV 238
Query: 238 KENFGTVRDTDEVQRELDIKFK 259
EN + DE++ +LD K
Sbjct: 239 AENNIKQKSIDELKTQLDTLMK 260
>gi|56459757|ref|YP_155038.1| hypothetical protein IL0648 [Idiomarina loihiensis L2TR]
gi|56178767|gb|AAV81489.1| Uncharacterized protein [Idiomarina loihiensis L2TR]
Length = 405
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 101/234 (43%), Positives = 144/234 (61%), Gaps = 5/234 (2%)
Query: 8 EFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPSVHSVRRR 67
+F +I ++ + + LD L +I +DY L + A+++ L VHSVR R
Sbjct: 5 QFLSANNISQEDWDKSRLDKELLLDIEKDYKAYKGELHRAAKFLAETLQPCEQVHSVRWR 64
Query: 68 VKKPTHLIEKIIRKGKKYQER--NISVLNYKEIVTDLIGIRVLHLFKDDWQNIHHEILNL 125
VK+P+H++EKI+RK + E+ I+V NYKE++TDL+G+RVLHLFK DW+ IH I +
Sbjct: 65 VKEPSHVLEKIVRKRAQGSEKYEKINVDNYKELITDLVGVRVLHLFKSDWRGIHQFITDK 124
Query: 126 WDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITKTLNISVEI 185
W +E R+GD + S E V V EHGYRS+HY++ T +S EI
Sbjct: 125 WKPQEQVIAYTRKGDQDSSN--ENYSKNGIKVEVHEHGYRSIHYIIATAPTNNQILS-EI 181
Query: 186 QVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKE 239
QVRT+FEE WSEIDH +RYP DN ++ +L IFNR+ GSADEMG F++ + +
Sbjct: 182 QVRTIFEEGWSEIDHKIRYPNFSDNELVAYFLTIFNRLSGSADEMGGFVRDLAK 235
>gi|153938129|ref|YP_001390937.1| RelA/SpoT domain protein [Clostridium botulinum F str. Langeland]
gi|152934025|gb|ABS39523.1| RelA/SpoT domain protein [Clostridium botulinum F str. Langeland]
Length = 273
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 101/246 (41%), Positives = 151/246 (61%), Gaps = 12/246 (4%)
Query: 2 DKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPSV 61
++L+KEEF K++ E+ + ++WN L +IY D+ + E + +++ + L +
Sbjct: 3 NELVKEEFLKKYPSIEEDIIKNKIEWNNLMDIYLDFNKYKDTYETQCDFISNILRTHNKI 62
Query: 62 HSVRRRVKKPTHLIEKIIRKGKKYQER-----NISVLNYKEIVTDLIGIRVLHLFKDDWQ 116
HSV+ RVK P LIEKIIRK +E+ +V NYKE + DLIGIRV+H+FK DW+
Sbjct: 63 HSVKSRVKNPERLIEKIIRKTPNRKEKYGENFQFTVENYKEEINDLIGIRVIHIFKQDWE 122
Query: 117 NIHHEILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDIT 176
+IH ILN W + E N+R GD + +F+E +N + R+ GYRSVHYL+ T
Sbjct: 123 DIHQFILNTWKVIEI-TANVRDGD-DTKRFEE----LNIQIQSRKSGYRSVHYLIEFFPT 176
Query: 177 KTLNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKK 236
I+ E+QVRT+FEE + EIDH +RY + ++ L +FNRI GSADEM +F+
Sbjct: 177 NQRVIA-EVQVRTIFEEGYGEIDHQLRYCHKEIPEVLALNLLLFNRISGSADEMASFINL 235
Query: 237 VKENFG 242
+ +N+G
Sbjct: 236 LNKNWG 241
>gi|90577881|ref|ZP_01233692.1| hypothetical protein VAS14_12559 [Vibrio angustum S14]
gi|90440967|gb|EAS66147.1| hypothetical protein VAS14_12559 [Vibrio angustum S14]
Length = 330
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 101/261 (38%), Positives = 147/261 (56%), Gaps = 16/261 (6%)
Query: 4 LIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPSVHS 63
L + F E I + + ++ +DW L I ++ + L++ AE + VHS
Sbjct: 6 LTEASFLSENRISQHEWQASSVDWTTLHQIGLNHEANIEQLKETAEMYARIIQRCQYVHS 65
Query: 64 VRRRVKKPTHLIEKIIRKGK------KYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQN 117
VR RVK P HL+EKI+RK + K + I+ NY IVTDLIG+R LHLFK+D
Sbjct: 66 VRWRVKDPQHLMEKIVRKTQPNTPTFKQKYVGINQTNYDSIVTDLIGVRALHLFKEDCLP 125
Query: 118 IHHEILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITK 177
+H + W E P +R GD + F E D+ +V + GYRS+HY+ G ++
Sbjct: 126 VHDYLCQEWKNAEPPIYYVRNGDDKV--FTELPSDV--EVKIHPAGYRSLHYVFG---SQ 178
Query: 178 TLN--ISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLK 235
LN + E+QVRT+FEE W+EIDH +RYP N + E+L +FNR+ GSADEMG+F+K
Sbjct: 179 PLNHIVFTEVQVRTIFEEGWTEIDHKIRYPNFSHNEQVCEFLLMFNRLAGSADEMGSFVK 238
Query: 236 K-VKENFGTVRDTDEVQRELD 255
+ V E + DE+ ++ D
Sbjct: 239 QLVSELEQHQKSIDEITQKSD 259
>gi|148379560|ref|YP_001254101.1| GTP pyrophosphatase [Clostridium botulinum A str. ATCC 3502]
gi|153933972|ref|YP_001383938.1| RelA/SpoT domain protein [Clostridium botulinum A str. ATCC 19397]
gi|153934781|ref|YP_001387484.1| RelA/SpoT domain protein [Clostridium botulinum A str. Hall]
gi|148289044|emb|CAL83134.1| putative GTP pyrophosphatase [Clostridium botulinum A str. ATCC
3502]
gi|152930016|gb|ABS35516.1| RelA/SpoT domain protein [Clostridium botulinum A str. ATCC 19397]
gi|152930695|gb|ABS36194.1| RelA/SpoT domain protein [Clostridium botulinum A str. Hall]
Length = 271
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 100/246 (40%), Positives = 151/246 (61%), Gaps = 12/246 (4%)
Query: 2 DKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPSV 61
++L+KEEF K++ E+ + ++WN L +IY D+ + E + +++ + L +
Sbjct: 3 NELVKEEFLKKYPSIEEDIIKNQIEWNNLMDIYLDFNKYKDTYETQCDFISNILRTHNKI 62
Query: 62 HSVRRRVKKPTHLIEKIIRKGKKYQER-----NISVLNYKEIVTDLIGIRVLHLFKDDWQ 116
HSV+ RVK LIEKIIRK +E+ +V NYKE + DLIGIRV+H+FK DW+
Sbjct: 63 HSVKSRVKNAERLIEKIIRKTPNRKEKYGEDFQFTVENYKEEINDLIGIRVIHIFKQDWE 122
Query: 117 NIHHEILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDIT 176
+IH ILN W + E N+R GD + +F+E +N + R+ GYRSVHYL+ T
Sbjct: 123 DIHQFILNTWKVIEI-TANVRDGD-DTKRFEE----LNIQIQSRKSGYRSVHYLIEFFPT 176
Query: 177 KTLNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKK 236
I+ E+QVRT+FEE + EIDH +RY ++ ++ L +FNRI GSADEM +F+
Sbjct: 177 NQRVIA-EVQVRTIFEEGYGEIDHQLRYCHEEIPEVLALNLLLFNRISGSADEMASFINL 235
Query: 237 VKENFG 242
+ +N+G
Sbjct: 236 LNKNWG 241
>gi|18310587|ref|NP_562521.1| hypothetical protein CPE1605 [Clostridium perfringens str. 13]
gi|18145268|dbj|BAB81311.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 269
Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 98/246 (39%), Positives = 145/246 (58%), Gaps = 11/246 (4%)
Query: 1 MDKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPS 60
M L KE F +++ E++ + + +LE IY D+++ +A+++ + L +
Sbjct: 1 MRSLNKEVFLQKYPHVEEHIEKNKIKFEDLERIYNDFVKFEGSYYNQADFIANILRSNEN 60
Query: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQERN-----ISVLNYKEIVTDLIGIRVLHLFKDDW 115
VHSV+ R+K P LIEKIIRK + +E+ + NYK +TDLIGIRVLH+FKD W
Sbjct: 61 VHSVKSRIKNPDRLIEKIIRKTEDRKEKYGEDFYFNEYNYKNEITDLIGIRVLHIFKDQW 120
Query: 116 QNIHHEILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDI 175
++IH I+ W++ E NIR GD + ++ +VI R+ GYRSVHYLV ++
Sbjct: 121 KDIHDFIIKTWNVIEI-TANIRDGDD-----RSIFDNLGIEVISRQSGYRSVHYLVELNF 174
Query: 176 TKTLNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLK 235
T+ EIQVRT+FEE + EIDH +RY + I+ L +FNRIVGSADEM + +
Sbjct: 175 TQDSTTIAEIQVRTIFEEGYGEIDHRLRYSHQEIPEILKSNLLLFNRIVGSADEMASLIN 234
Query: 236 KVKENF 241
+ N
Sbjct: 235 MLNNNL 240
>gi|110800709|ref|YP_696292.1| GTP pyrophosphokinase-like protein [Clostridium perfringens ATCC
13124]
gi|110675356|gb|ABG84343.1| GTP pyrophosphokinase-like protein [Clostridium perfringens ATCC
13124]
Length = 268
Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 99/246 (40%), Positives = 146/246 (59%), Gaps = 12/246 (4%)
Query: 1 MDKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPS 60
M L KE F K++ E+Y +++ +L+ IY+D+++ +A+++ + L +
Sbjct: 1 MRSLNKEVFLKKYPHVEEYIEKNKIEFEDLQRIYKDFVKFEGSYYNQADFIANILRSNEN 60
Query: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQER-----NISVLNYKEIVTDLIGIRVLHLFKDDW 115
VHSV+ R+K P LIEKIIRK + +E+ + NYK +TDLIGIRVLH+FKD W
Sbjct: 61 VHSVKSRIKNPDRLIEKIIRKTEDRKEKYGEDFYFNEDNYKNEITDLIGIRVLHIFKDQW 120
Query: 116 QNIHHEILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDI 175
++IH I+ W++ E NIR GD + ++ +VI R+ GYRSVHYLV
Sbjct: 121 KDIHDFIIKTWNVIEI-TANIRDGDD-----RSIFDNLGIEVISRQSGYRSVHYLVECYP 174
Query: 176 TKTLNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLK 235
T + EIQVRT+FEE + EIDH +RY ++ I+ L +FNRIVGSADEM + +
Sbjct: 175 TNQ-KVIAEIQVRTIFEEGYGEIDHRLRYSHNEIPEILKSNLLLFNRIVGSADEMASLIN 233
Query: 236 KVKENF 241
+ N
Sbjct: 234 MLNNNL 239
>gi|110803827|ref|YP_698891.1| GTP pyrophosphokinase-like protein [Clostridium perfringens SM101]
gi|110684328|gb|ABG87698.1| GTP pyrophosphokinase-like protein [Clostridium perfringens SM101]
Length = 268
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 99/246 (40%), Positives = 145/246 (58%), Gaps = 12/246 (4%)
Query: 1 MDKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPS 60
M L KE F K++ E+Y + + +L+ IY+D+++ +A+++ + L +
Sbjct: 1 MRSLNKEVFLKKYPHVEEYIEKNKIKFEDLQRIYKDFVKFEGSYYNQADFIANILRSNEN 60
Query: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQERN-----ISVLNYKEIVTDLIGIRVLHLFKDDW 115
VHSV+ R+K P LIEKIIRK + +E+ + NYK +TDLIGIRVLH+FKD W
Sbjct: 61 VHSVKSRIKNPDRLIEKIIRKTEDRKEKYGEDFYFNEDNYKNEITDLIGIRVLHIFKDQW 120
Query: 116 QNIHHEILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDI 175
++IH I+ W++ E NIR GD + ++ +VI R+ GYRSVHYLV
Sbjct: 121 KDIHDFIIKTWNVIEI-TANIRDGDD-----RSIFDNLGIEVISRQSGYRSVHYLVECYP 174
Query: 176 TKTLNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLK 235
T + EIQVRT+FEE + EIDH +RY ++ I+ L +FNRIVGSADEM + +
Sbjct: 175 TNQ-KVIAEIQVRTIFEEGYGEIDHRLRYSHNEIPEILKSNLLLFNRIVGSADEMASLIN 233
Query: 236 KVKENF 241
+ N
Sbjct: 234 MLNNNL 239
>gi|34763831|ref|ZP_00144740.1| GTP pyrophosphokinase [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886387|gb|EAA23653.1| GTP pyrophosphokinase [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 86
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 74/79 (93%), Positives = 76/79 (96%)
Query: 181 ISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKEN 240
ISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKEN
Sbjct: 8 ISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKEN 67
Query: 241 FGTVRDTDEVQRELDIKFK 259
FG +D DEVQRELD+KFK
Sbjct: 68 FGNAKDADEVQRELDMKFK 86
>gi|89075650|ref|ZP_01162051.1| hypothetical protein SKA34_03935 [Photobacterium sp. SKA34]
gi|89048657|gb|EAR54230.1| hypothetical protein SKA34_03935 [Photobacterium sp. SKA34]
Length = 299
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 91/220 (41%), Positives = 130/220 (59%), Gaps = 21/220 (9%)
Query: 44 LEKEAEYVVSKLIDVPSVHSVRRRVKKPTHLIEKIIRKGK------KYQERNISVLNYKE 97
L++ AE + VHSVR RVK P HL+EKI+RK + K + I+ NY
Sbjct: 15 LKETAEMYARIIQRCKYVHSVRWRVKDPQHLMEKIVRKTQANTPTFKQKYEGINQTNYDS 74
Query: 98 IVTDLIGIRVLHLFKDDWQNIHHEILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDV 157
IVTDLIG+R LHLFK+D +H + W E P +R GD + F E D+ +V
Sbjct: 75 IVTDLIGVRALHLFKEDCLPVHDYLCQEWKNAEPPIYYVRNGDDKV--FTELPSDV--EV 130
Query: 158 IVREHGYRSVHYLVGIDITKTLN--ISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITE 215
+ GYRS+HY+ G ++ LN + E+QVRT+FEE W+EIDH +RYP N + E
Sbjct: 131 KIHPAGYRSLHYVFG---SQPLNHIVFTEVQVRTIFEEGWTEIDHKIRYPNFSHNEQVCE 187
Query: 216 YLGIFNRIVGSADEMGTFLKKVKENFGTVRDTDEVQRELD 255
+L +FNR+ GSADEMG+F+K++ V + ++ Q+ +D
Sbjct: 188 FLLMFNRLAGSADEMGSFVKQL------VSELEQHQKSID 221
>gi|150016192|ref|YP_001308446.1| RelA/SpoT domain protein [Clostridium beijerinckii NCIMB 8052]
gi|149902657|gb|ABR33490.1| RelA/SpoT domain protein [Clostridium beijerinckii NCIMB 8052]
Length = 274
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 91/239 (38%), Positives = 136/239 (56%), Gaps = 12/239 (5%)
Query: 9 FFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPSVHSVRRRV 68
F +++ ++ ++ L+ IYEDYI E +A ++ + L VHSV+ R+
Sbjct: 10 FLEKYPQAKEIISKNNINIENLKEIYEDYINYKTSYESQAAFIANILRSQRMVHSVKSRI 69
Query: 69 KKPTHLIEKIIRKGKKYQER-----NISVLNYKEIVTDLIGIRVLHLFKDDWQNIHHEIL 123
K P LIEK+IRK + + + +V NY+ + DLIGIRV+H+FKD WQ IH I+
Sbjct: 70 KDPERLIEKVIRKTEDRKNKYGDDFEFTVNNYRNEINDLIGIRVIHIFKDQWQGIHDFII 129
Query: 124 NLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITKTLNISV 183
W++ E N+R GD N+ F + I ++ + GYRSVHYLV +
Sbjct: 130 KTWNVTEI-TANVREGD-NIDVFDDPIIEVRS----KASGYRSVHYLVEFYPINE-KVIA 182
Query: 184 EIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKENFG 242
EIQVRT+FEE + EIDH +RY ++ I+ L +FNRIVGSADEM + + + + +G
Sbjct: 183 EIQVRTIFEEGYGEIDHRLRYSHNEIPEILKSNLMLFNRIVGSADEMASLINNLSKEWG 241
>gi|118580701|ref|YP_901951.1| RelA/SpoT domain protein [Pelobacter propionicus DSM 2379]
gi|118503411|gb|ABK99893.1| RelA/SpoT domain protein [Pelobacter propionicus DSM 2379]
Length = 221
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 15/181 (8%)
Query: 56 IDVPSVHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDW 115
I+ P VHSV+ R+K HL +K+ RK E I N + +TDL G+R++HL++D +
Sbjct: 41 IEFPIVHSVKARIKSRDHLKDKLFRKWT--DENPIGPENIFDRITDLAGVRIMHLYQDQF 98
Query: 116 QNIHHEIL------NLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHY 169
IH+E+L N W + E P+ D +F E DI +V V+E Y SVHY
Sbjct: 99 PLIHNEVLAKVNDLNDWYLPEAPKAYT--WDPESQKFFE---DIGIEVHVKESFYTSVHY 153
Query: 170 LVGIDITKTLNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADE 229
LV L EIQVRT+FEE W E+DH + YP D E L + ++VG+
Sbjct: 154 LVKPRSDSPL--CCEIQVRTLFEEIWGEVDHTLNYPEPSDKVSCREQLRVLAKLVGAGSR 211
Query: 230 M 230
+
Sbjct: 212 L 212
>gi|34765036|ref|ZP_00145336.1| GTP pyrophosphokinase [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27885625|gb|EAA23065.1| GTP pyrophosphokinase [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 64
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/48 (97%), Positives = 48/48 (100%)
Query: 1 MDKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYIELVPLLEKEA 48
MDKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDY+ELVPLLEKEA
Sbjct: 1 MDKLIKEEFFKEFSIDEDYFLSTGLDWNELENIYEDYVELVPLLEKEA 48
>gi|28868077|ref|NP_790696.1| hypothetical protein PSPTO_0856 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28851313|gb|AAO54391.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 272
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 12/176 (6%)
Query: 59 PSVHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNI 118
P +HSV+ R+K P HL EK+ RK ++ + TDL G+RVL L + + +
Sbjct: 45 PVIHSVKSRIKDPGHLTEKVARKLADLAAEPAPEEMFRRL-TDLSGVRVLLLHQYQFIAL 103
Query: 119 HHEIL----NLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGID 174
H E L N W + E P+ D ++F + + DIN ++ +E Y S+HY+ I
Sbjct: 104 HAEFLKKTKNDWHLVEPPKAYT--WDPESAEFFKKL-DINTEL--KESHYTSLHYV--IR 156
Query: 175 ITKTLNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEM 230
++ EIQVRT+FEE W E+DH + YP DN +E L + ++VG+ +
Sbjct: 157 PKAESDVVCEIQVRTLFEEIWGEVDHSLNYPSPTDNVACSEQLRVLAKVVGAGSRL 212
>gi|53718773|ref|YP_107759.1| hypothetical protein BPSL1138 [Burkholderia pseudomallei K96243]
gi|52209187|emb|CAH35132.1| hypothetical protein [Burkholderia pseudomallei K96243]
Length = 232
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 59 PSVHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNI 118
P VHSV+ R+K P HL EKI+RK I+ N +TDL+G+RVL L + ++ I
Sbjct: 44 PHVHSVKSRLKDPDHLKEKIVRKWDP--SNPITPDNLLSRITDLVGVRVLLLHQQKFEEI 101
Query: 119 HHEILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITKT 178
I KE V + + K + + +V ++ Y SVHY+V
Sbjct: 102 KKAIDFRLSKKEWILVESPKAYTWDPEAKGFFESLGYEVHAKDSFYTSVHYVV--RQYDE 159
Query: 179 LNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEM 230
I EIQVRT+FEE WSE+DH + YP ++ + + + +++G+ +
Sbjct: 160 SPICCEIQVRTLFEEIWSEVDHTINYPEKTESASCRDQILVLAKLIGAGSRL 211
>gi|68553358|ref|ZP_00592735.1| RelA/SpoT [Prosthecochloris aestuarii DSM 271]
gi|68239810|gb|EAN22094.1| RelA/SpoT [Prosthecochloris aestuarii DSM 271]
Length = 572
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 32/229 (13%)
Query: 30 LENIYEDYIELVPLLEKEAEYVVSKLID---------VPSVHSVRRRVKKPTHLIEKIIR 80
+E Y + + + KE E V+ L D VP ++ + RVK L K R
Sbjct: 3 MEGTYWKIKKYLEKVSKELEAVLRDLDDECVKARENGVP-IYLTKGRVKTLDSLYLKTKR 61
Query: 81 KGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHHEILNLWDIKETPQVNIRRGD 140
KG Y + +TD+ G RVL LF+ D ++H +L L++ + I
Sbjct: 62 KGDDYLD-----------ITDIAGFRVLCLFEKDLLSVHEFLLRLFNRDYVAKKCIVYNW 110
Query: 141 YNLSQF--------KETIKDINCDVIVREH--GYRSVHYLVGIDITKTLNISVEIQVRTV 190
LS F + K I + ++ GYRS+HYLV + T++ +E+Q+RT+
Sbjct: 111 DELSPFYSELIRRAESVYKRITFPIERKDKISGYRSIHYLVEKE-TRSRVFKMEVQLRTI 169
Query: 191 FEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEMGTFLKKVKE 239
++ W EI+H + Y P + E + + + + + D++ + L+ ++E
Sbjct: 170 AQDVWGEIEHEIAYKKASVRPYVKESVRLLAKDLQNIDDLFSHLRNIQE 218
>gi|94985528|ref|YP_604892.1| RelA/SpoT [Deinococcus geothermalis DSM 11300]
gi|94555809|gb|ABF45723.1| RelA/SpoT [Deinococcus geothermalis DSM 11300]
Length = 362
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 33/182 (18%)
Query: 31 ENIYEDYIELVPLLEKEAEYVVSKLIDVPS-----VHSVRRRVKKPTHLIEKIIRKGKKY 85
E + + Y E +P E+ + VV+ L + +H V RVK+P L +K+ RK +Y
Sbjct: 4 EALVQTYREALPEYERLRDAVVAHLTQRLTAAGLKIHHVTGRVKRPASLADKLRRKPGRY 63
Query: 86 QERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHHEILNLWDIKETPQVNIRRGDYNLSQ 145
VTDL+G+RV+ F+ D + I + + D++ S
Sbjct: 64 HTL--------ADVTDLVGVRVITYFERDVNAVARLIEEHFVV-----------DWDNSS 104
Query: 146 FKETIKDINCDVIVREHGYRSVHYLVGI--DITKTL-NISVEIQVRTVFEEAWSEIDHIM 202
K + D + GY VHY+V D+ L E+Q+R++ + AW+EI+H +
Sbjct: 105 DKSKMHDPD------RFGYLGVHYVVRAEPDLVPALAGTRYEVQIRSILQHAWAEIEHDL 158
Query: 203 RY 204
Y
Sbjct: 159 GY 160
>gi|156865437|gb|EDO58868.1| hypothetical protein CLOL250_00409 [Clostridium sp. L2-50]
Length = 248
Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 27/154 (17%)
Query: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH 120
+ ++ R+KKP + K+ KG + +SV N + D+ G+RV+ F DD +
Sbjct: 71 IEFIQSRIKKPVSIATKLSSKGCQ-----VSVENIVYNLNDVAGLRVICSFIDDIYAVAE 125
Query: 121 EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDI---TK 177
++ I + D L + K+ I + +GYRS+H ++ + +
Sbjct: 126 KL-------------ISQNDITLIEAKDYISH------PKPNGYRSLHLIIEVPVFFADH 166
Query: 178 TLNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNP 211
T N+ VE+Q+RT+ + W+ +DH +RY DV +P
Sbjct: 167 TRNMRVEVQIRTIAMDFWASLDHQLRYKKDVADP 200
>gi|119714541|ref|YP_921506.1| RelA/SpoT domain protein [Nocardioides sp. JS614]
gi|119535202|gb|ABL79819.1| RelA/SpoT domain protein [Nocardioides sp. JS614]
Length = 247
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 23/162 (14%)
Query: 53 SKLIDVPSVHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFK 112
+ L D + SV R+K P L+EK++RKG ER S + VTD+ G+RV+ F
Sbjct: 39 THLRDYNPIESVSSRLKSPESLVEKMLRKGLVLDERP-SFDQIRATVTDIAGVRVVCSFV 97
Query: 113 DDWQNIHHEILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVG 172
D + ++ D+ V +R DY + + +GYRS+H LV
Sbjct: 98 SDVYRVFDMLVEQEDVS---TVEVR--DYIATP--------------KPNGYRSLHALVE 138
Query: 173 IDITKT---LNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNP 211
+ + + + + VE+Q RT+ + W+ ++H + Y Y + P
Sbjct: 139 VPVFLSEGPVPVLVEVQFRTIAMDFWASLEHKIYYKYRREVP 180
>gi|49484710|ref|YP_041934.1| hypothetical protein SAR2586 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49242839|emb|CAG41566.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
Length = 230
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 27/190 (14%)
Query: 18 DYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPSVHSVRRRVKKPTHLIEK 77
D T L + EL++IY ++ + + + + +H + RRVK+ LIEK
Sbjct: 29 DEAFDTLLGFVELDHIYSSALKEISTKLSILDDNFNHIYKHNPIHHMERRVKEMRSLIEK 88
Query: 78 IIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHHEILNLWDIKETPQVNIR 137
+ RKG + IS KE + D+ GIRV+ + DD I +L D++ I+
Sbjct: 89 LNRKGLQ-----ISAETAKEHILDIAGIRVVCNYLDDIYLIEEMLLKQEDVQL-----IK 138
Query: 138 RGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDI---TKTLNISVEIQVRTVFEEA 194
R DY +E+GYRS+H +V I + + + VEIQ+RT+ +
Sbjct: 139 RKDYIQHP--------------KENGYRSLHIVVSIPVFLAERVEVLPVEIQIRTIGMDM 184
Query: 195 WSEIDHIMRY 204
W+ ++H +RY
Sbjct: 185 WASLEHKIRY 194
>gi|15925499|ref|NP_373033.1| GTP-pyrophosphokinase [Staphylococcus aureus subsp. aureus Mu50]
gi|15928088|ref|NP_375621.1| hypothetical protein SA2297 [Staphylococcus aureus subsp. aureus
N315]
gi|21284156|ref|NP_647244.1| hypothetical protein MW2427 [Staphylococcus aureus subsp. aureus
MW2]
gi|49487286|ref|YP_044507.1| hypothetical protein SAS2394 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57651016|ref|YP_187312.1| hypothetical protein SACOL2518 [Staphylococcus aureus subsp. aureus
COL]
gi|87160878|ref|YP_495080.1| hypothetical protein SAUSA300_2446 [Staphylococcus aureus subsp.
aureus USA300]
gi|88196445|ref|YP_501269.1| hypothetical protein SAOUHSC_02811 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148268942|ref|YP_001247885.1| RelA/SpoT domain protein [Staphylococcus aureus subsp. aureus JH9]
gi|150395019|ref|YP_001317694.1| RelA/SpoT domain protein [Staphylococcus aureus subsp. aureus JH1]
gi|151222617|ref|YP_001333439.1| hypothetical protein NWMN_2405 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156980824|ref|YP_001443083.1| hypothetical protein SAHV_2493 [Staphylococcus aureus subsp. aureus
Mu3]
gi|13702459|dbj|BAB43600.1| SA2297 [Staphylococcus aureus subsp. aureus N315]
gi|14248283|dbj|BAB58671.1| GTP-pyrophosphokinase [Staphylococcus aureus subsp. aureus Mu50]
gi|21205599|dbj|BAB96292.1| MW2427 [Staphylococcus aureus subsp. aureus MW2]
gi|49245729|emb|CAG44208.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57285202|gb|AAW37296.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
COL]
gi|87126852|gb|ABD21366.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87204003|gb|ABD31813.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147742011|gb|ABQ50309.1| RelA/SpoT domain protein [Staphylococcus aureus subsp. aureus JH9]
gi|149947471|gb|ABR53407.1| RelA/SpoT domain protein [Staphylococcus aureus subsp. aureus JH1]
gi|150375417|dbj|BAF68677.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156722959|dbj|BAF79376.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
Length = 230
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 27/190 (14%)
Query: 18 DYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPSVHSVRRRVKKPTHLIEK 77
D T L + EL++IY ++ + + + + +H + RRVK+ LIEK
Sbjct: 29 DEAFDTLLGFVELDHIYSSALKEISTKLSILDDNFNHIYKHNPIHHMERRVKEMRSLIEK 88
Query: 78 IIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHHEILNLWDIKETPQVNIR 137
+ RKG + IS KE + D+ GIRV+ + DD I +L D++ I+
Sbjct: 89 LNRKGLQ-----ISAETAKEHILDIAGIRVVCNYLDDIYLIEEMLLKQEDVQL-----IK 138
Query: 138 RGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDI---TKTLNISVEIQVRTVFEEA 194
R DY +E+GYRS+H +V I + + + VEIQ+RT+ +
Sbjct: 139 RKDYIQHP--------------KENGYRSLHIVVSIPVFLAERVEVLPVEIQIRTIGMDM 184
Query: 195 WSEIDHIMRY 204
W+ ++H +RY
Sbjct: 185 WASLEHKIRY 194
>gi|82752090|ref|YP_417831.1| hypothetical protein SAB2381c [Staphylococcus aureus RF122]
gi|82657621|emb|CAI82069.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 230
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 27/190 (14%)
Query: 18 DYFLSTGLDWNELENIYEDYIELVPLLEKEAEYVVSKLIDVPSVHSVRRRVKKPTHLIEK 77
D T L + EL++IY ++ + + + + +H + RRVK+ LIEK
Sbjct: 29 DEAFDTLLGFVELDHIYSSALKEISTKLSILDDNFNHIYKHNPIHHMERRVKEMRSLIEK 88
Query: 78 IIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHHEILNLWDIKETPQVNIR 137
+ RKG + IS KE + D+ GIRV+ + DD I +L D++ I+
Sbjct: 89 LNRKGLQ-----ISAETAKEHILDIAGIRVVCNYLDDIYLIEEMLLKQEDVQL-----IK 138
Query: 138 RGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDI---TKTLNISVEIQVRTVFEEA 194
R DY +E+GYRS+H +V I + + + VEIQ+RT+ +
Sbjct: 139 RKDYIQHP--------------KENGYRSLHIVVSIPVFLAERVEVLPVEIQIRTIGMDM 184
Query: 195 WSEIDHIMRY 204
W+ ++H +RY
Sbjct: 185 WASLEHKIRY 194
>gi|27468970|ref|NP_765607.1| GTP-pyrophosphokinase [Staphylococcus epidermidis ATCC 12228]
gi|57865473|ref|YP_189621.1| hypothetical protein SERP2065 [Staphylococcus epidermidis RP62A]
gi|27316518|gb|AAO05693.1|AE016750_298 GTP-pyrophosphokinase [Staphylococcus epidermidis ATCC 12228]
gi|57636131|gb|AAW52919.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
Length = 233
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 27/152 (17%)
Query: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH 120
+H + RRVK+ L++K+ RKG + +S + K+ + D+ GIRV+ + DD I
Sbjct: 72 IHHMERRVKEMHSLVKKLNRKGFE-----VSAQSAKDNIMDIAGIRVVCNYLDDIYVIEK 126
Query: 121 EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDITKTLN 180
+L D+K ++R DY +E+GYRS+H +V I + +
Sbjct: 127 MLLRQEDVKL-----LKRKDYITHP--------------KENGYRSLHIVVSIPVFLADS 167
Query: 181 ISV---EIQVRTVFEEAWSEIDHIMRYPYDVD 209
+ V EIQ+RT+ + W+ ++H +RY D D
Sbjct: 168 VEVTPVEIQIRTIGMDMWASLEHKIRYKNDTD 199
>gi|70725571|ref|YP_252485.1| hypothetical protein SH0570 [Staphylococcus haemolyticus JCSC1435]
gi|68446295|dbj|BAE03879.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 232
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 27/147 (18%)
Query: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH 120
+H + RRVK+ LI+K+ RK + +IS + +E + D+ GIRV+ + +D I
Sbjct: 72 IHHMERRVKEMNSLIKKLHRK-----QLDISAESAREHILDIAGIRVVCNYLEDIYVIEK 126
Query: 121 EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDI---TK 177
+L D+K ++R DY IK+ +E+GYRS+H +V I + K
Sbjct: 127 MLLQQEDVKL-----LKRKDY--------IKN------PKENGYRSLHIVVSIPVFLSNK 167
Query: 178 TLNISVEIQVRTVFEEAWSEIDHIMRY 204
+ VEIQ+RT+ + W+ ++H +RY
Sbjct: 168 VEKLPVEIQIRTIGMDMWASLEHKIRY 194
>gi|68053942|ref|ZP_00538107.1| RelA/SpoT [Exiguobacterium sibiricum 255-15]
gi|68009720|gb|EAM88930.1| RelA/SpoT [Exiguobacterium sibiricum 255-15]
Length = 359
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 41/207 (19%)
Query: 29 ELENIYEDYIELVPLLEKEAEYVVSKLIDVPSV--HSVRRRVKKPTHLIEKIIRKGKKYQ 86
E N EDY L+ ++S+L+D + HS+ R K+ L +K++R+ KYQ
Sbjct: 12 EYVNDKEDYDAFADKLK----VLLSELLDAAGIKYHSIVARTKESDSLYQKVLRQPNKYQ 67
Query: 87 ERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHHEILNLWDIKETPQVNIRRGDYNLSQF 146
V DL GIR++ F DD + I N + I V+
Sbjct: 68 SL--------RDVHDLTGIRIVTYFHDDVREAARIIENEFSIDRDQSVD----------- 108
Query: 147 KETIKDINCDVIVREHGYRSVHYLVGIDITKTL--------NISVEIQVRTVFEEAWSEI 198
K T+ D E GY SVH++ ++ + + + EIQ+R++ + AW+EI
Sbjct: 109 KSTLLDTT------EFGYLSVHFVAALNEQRLALSEYGRFKDHTAEIQIRSILQHAWAEI 162
Query: 199 DHIMRYPYDVDNPIITEYLGIFNRIVG 225
+H + Y N + E F+R+ G
Sbjct: 163 EHDLGYKN--PNSVPAEVRRSFSRVAG 187
>gi|89896553|ref|YP_520040.1| hypothetical protein DSY3807 [Desulfitobacterium hafniense Y51]
gi|89336001|dbj|BAE85596.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 231
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 27/150 (18%)
Query: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH 120
+H + R+K+P + EK++RKG + + E +TD+ GIRV+ + +D I
Sbjct: 69 IHHMESRLKQPQSIREKLLRKGLTPDMKLAT-----EHITDIAGIRVICYYINDIYTIAE 123
Query: 121 EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDI---TK 177
+L DI I+R DY + + +GYRS+H +V + +
Sbjct: 124 VLLKQDDI-----TLIKRSDYIENP--------------KSNGYRSLHLVVSVPVFLSEG 164
Query: 178 TLNISVEIQVRTVFEEAWSEIDHIMRYPYD 207
T N+ VE+Q+RT+ + W+ ++H ++Y D
Sbjct: 165 TRNVPVEVQIRTIAMDFWASLEHRLKYKSD 194
>gi|15614448|ref|NP_242751.1| hypothetical protein BH1885 [Bacillus halodurans C-125]
gi|10174503|dbj|BAB05604.1| BH1885 [Bacillus halodurans C-125]
Length = 251
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 31/174 (17%)
Query: 41 VPLLEKEAEYVVSKLIDVPSVHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVT 100
+ +L++E +Y+ D + V RVK P ++ KI R+G + +I +E V
Sbjct: 36 IDILKQEFQYIH----DYNPIEHVSSRVKSPESIVNKIQRRGNDFTLESI-----RENVR 86
Query: 101 DLIGIRVLHLFKDDWQNIHHEILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVR 160
D+ GIR+ F+ D + +++ DI ++ + K+ IK+ +
Sbjct: 87 DIAGIRITCSFESDIYTLSEQLMQQHDI-------------SVVETKDYIKN------PK 127
Query: 161 EHGYRSVHYLVGIDI---TKTLNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNP 211
+GYRS+H ++ I I + ++ VE+Q+RT+ + W+ ++H + Y Y+ + P
Sbjct: 128 PNGYRSLHLILSIPIFMSDRVQDVYVEVQIRTIAMDFWASLEHKIYYKYNKNVP 181
>gi|116493391|ref|YP_805126.1| Uncharacterized protein, RelA_SpoT domain [Pediococcus pentosaceus
ATCC 25745]
gi|116103541|gb|ABJ68684.1| Uncharacterized protein, RelA_SpoT domain [Pediococcus pentosaceus
ATCC 25745]
Length = 236
Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 30/173 (17%)
Query: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH 120
+H + +R+K T L K KK+ +R+I + K+ + D+ GIRV+ + D I
Sbjct: 67 IHHMEQRMKTITSLFNK---AEKKHLDRDIESI--KQNIFDIGGIRVVTNYISDVYTIQK 121
Query: 121 EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDI---TK 177
+L+ DIK L + K+ IK+ + GYRSVH +V + + T
Sbjct: 122 NLLSQSDIK-------------LIKTKDYIKN------PKPSGYRSVHLVVSVPVFLSTG 162
Query: 178 TLNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEYLGIFNRIVGSADEM 230
+N VEIQ+RTV + W+ ++H +RY +V + + + N++V A+E+
Sbjct: 163 PVNTPVEIQIRTVGMDMWASLEHKLRYKTNVADEKVEHFE---NQLVEDANEI 212
>gi|23465967|ref|NP_696570.1| narrowly conserved hypothetical protein [Bifidobacterium longum
NCC2705]
gi|23326681|gb|AAN25206.1| narrowly conserved hypothetical protein [Bifidobacterium longum
NCC2705]
Length = 280
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 82/159 (51%), Gaps = 27/159 (16%)
Query: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH 120
+H + RR+K + +I K+ RKG I V + K+ + D+ GIRV+ ++DD ++ +
Sbjct: 107 IHHMERRLKSVSSIIGKLERKGLP-----IGVNSIKDNLFDVAGIRVICNYRDDVYSVSN 161
Query: 121 EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDI---TK 177
+ + DI+ + + K+ IK+ +++GYRS+H + + + +
Sbjct: 162 YLSSQSDIQ-------------VLRVKDYIKN------PKQNGYRSLHVIYAVPVFLSSG 202
Query: 178 TLNISVEIQVRTVFEEAWSEIDHIMRYPYDVDNPIITEY 216
VE+Q RT+ + W+ ++H +RY D+ + + E+
Sbjct: 203 AHYTPVEVQFRTIAMDYWASLEHALRYKTDLPDNKLAEH 241
>gi|89894005|ref|YP_517492.1| hypothetical protein DSY1259 [Desulfitobacterium hafniense Y51]
gi|109646427|ref|ZP_01370331.1| RelA/SpoT [Desulfitobacterium hafniense DCB-2]
gi|89333453|dbj|BAE83048.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|109641673|gb|EAT51227.1| RelA/SpoT [Desulfitobacterium hafniense DCB-2]
Length = 229
Score = 53.9 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 27/147 (18%)
Query: 61 VHSVRRRVKKPTHLIEKIIRKGKKYQERNISVLNYKEIVTDLIGIRVLHLFKDDWQNIHH 120
+H + R+K P + +K+ + G ++V +E V D+ GIRV+ F DD +
Sbjct: 70 IHHLEYRIKSPLSIGKKLQKYGLP-----LTVEAARERVLDIAGIRVICNFLDDVYAVEK 124
Query: 121 EILNLWDIKETPQVNIRRGDYNLSQFKETIKDINCDVIVREHGYRSVHYLVGIDI---TK 177
+L D+ ++R DY + Q K +GYRS+H +V + I
Sbjct: 125 MLLQQADV-----TLVKRKDY-IEQAKA-------------NGYRSLHLVVKVPIFLSGS 165
Query: 178 TLNISVEIQVRTVFEEAWSEIDHIMRY 204
T I VEIQ+RTV + W+ ++H++RY
Sbjct: 166 TEEIPVEIQLRTVAMDYWASLEHMLRY 192
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.320 0.141 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 993,385,875
Number of Sequences: 5470121
Number of extensions: 42889881
Number of successful extensions: 146510
Number of sequences better than 1.0e-05: 70
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 146367
Number of HSP's gapped (non-prelim): 70
length of query: 259
length of database: 1,894,087,724
effective HSP length: 130
effective length of query: 129
effective length of database: 1,182,971,994
effective search space: 152603387226
effective search space used: 152603387226
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)