Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss373024	KWOK|OVLP-000621-172386		rev/B	C/T	gcgtggtatctaaagaaacctgacacaatc	taaaatacagaaacagatacaaaatagttt	06/30/00	10/10/03	79	Genomic			99 %
ss1231613	KWOK|OVLP-000804-349996		fwd/T	A/G	aaactattttgtatctgtttctgtatttta	gattgtgtcaggtttctttagataccacgc	09/02/00	10/10/03	86	Genomic			97 %
ss1956925	KWOK|OVLP-000925-434620		fwd/T	A/G	aaactattttgtatctgtttctgtatttta	gattgtgtcaggtttctttagataccacgc	10/06/00	04/07/04	87	Genomic			97 %
ss3661211	SC_JCM|AC019106.3_164990		fwd/T	A/G	aaactattttgtatctgtttctgtatttta	gattgtgtcaggtttctttagataccacgc	09/24/01	10/10/03	100	Genomic			unknown
ss23236732	PERLEGEN|afd0788219		fwd/T	A/G	aaactattttgtatctgtttctgtatttta	gattgtgtcaggtttctttagataccacgc	08/10/04	09/13/04	123	Genomic			unknown
ss75182139	ILLUMINA|ILMN_Human_1M_rs288071		fwd/T	A/G	aaactattttgtatctgtttctgtatttta	gattgtgtcaggtttctttagataccacgc	08/28/07	08/29/07	129	Genomic			unknown

Fasta sequence   (Legend)

 GTCCTAAATA CTCCAAAGTA TCTAATGCAC TTAAGAAATG CATTGAGGAT TTTCAAAATA
 TATTTGCTCT TGAGATCCTC AATCTACTGT ATGCATTATA cagacgtacc ctggagttac
 tgcaggttta gttctagctg ccacgataaa gcaagtcaca tgaattttgt gttttccagt
 gcatacaata gttacgttta cactatactg tggtctatta agtgtgcaat agtatgtcta
 aaaagtacat accttaatga aaaaatactt tattgctaaa aatactaatg attttttcgt
 tttttgagac ggagtcttat tctgtcaccc aggctggagt gcgatggcac gatctcggct
 cactgcaact tccgcctccc gggttcaagc aattctcctg cctcagcctc ccaagtagct
 gggattacag gcacctgcca tcatgcctga ctaatttttg tatttttgta gagatggggt
 ttcaccatgt tggacaggct ggtctcgaac ttctaacttc aagtgatcca tctgcctcgg
 cctcccgaag tgctgggatt acagtcatga gccacccgcg cctggcccta atgatcattt
 aagctttctg caagtcatag tcttgttgat gaagggtctt gcttcaatgt tgatgactgc
 tgaccgatca gggtggtggt ttctgaaggt taggttgact gtggcagttt cttaaaataa
 gataacaatg aagtttacca cattggttgt gtcttccctt catgaaagat atctctgtaa
 catgcaatgt tgtttgatag catttcaacc acagaacgtc aaatttggag tcaatccact
 caaaccttgc ctctggctca tcaacttagt ttatgtaata ttctaaatcc tttgttgtta
 tcttgacaat gttcatagca tctttaccag gagtagattt tatctcaaga gaccactctt
 ttgctcattc ataaggcgca actcttttgt taaggttttc ttatgagatc agagcaatcc
 agtcacatct tcaggcttca cttttaatgc tagttctttt tctatttcca ccacatgtac
 agaatattaa ttcttcactg aagtcttgaa cccctcaaag tcatctgtga gagttggaat
 taagttaata cttcttttaa actcctgtta gtgttagtat tttgacctcc taccatgaat
 cataaatgtt cttaatggca tctaggatag tgaaattttt ccagaaagtt ttcagtttac
 tttgcccata tccatcagag gatgcacaat ctgtggtagc tacagcctta tgaaatgcat
 ttcttaaata agacgtgaaa gtcaaaatta ctccttggtc catgggctgc aaaatgcatg
 ttgtattagc agacataaag ccaacatcaa tctccttgta catctccatt agagcttttg
 ggtgaccagg tgctttgtca atgagcagta accttttaaa agaaatcttt ttttctgagc
 agtgggtctc aacagtaggc ataaaatatt gagtaaacaa tcctgtaaac agatatgcta
 tcatccaggc tttccattta catcatccag gtggttccat ttgcagagca aagacagagt
 agatttagca tcattcttac gggccctagg atttttggaa tggtaaatga gcgctgactt
 caatatcaag tcaccactgc actagcctct aacaggagag tcagcctgtc ctttgaagct
 gtgaagctag gcattgactt tcctctctag ctatgaaagt cctagatagg atcttcttcc
 aataaaaagg ttgttttatc tacattaaca atctattgtg tagtgtagct gtcttcatca
 aagattttag ctagatcttc tagagaactt gtggcatctt ctccactagc acctgctgct
 tcacctttaa cttttatgtt atgaagatgg cttctttcct taaacctcat gaaccaacct
 ctgctagctt ccagcctttc ttctgcagct tctttacctc tctcaggctt catagaattg
 aaaagagcta gggcctttct ctggattagg ctttggctta agggaatgtt gtggatagtt
 tggtcttcta tgcagaccac tgaaactttt tccatatcaa caataaggct tttcaagttt
 cttatcattt gtatgttttc tggagtagta cttttaattt cctctgagaa cttttcattt
 gcgttcacaa tttggctgct tggtgaaaga ggcctagctg ttggcctatt tcagttttta
 acatgcctgc ctcactaaac ttagtcattc ctagtttttt atttaaagtg agagatatgt
 aactctttat ttcactttaa catttaaaag tcatggtaga gttataaatt ggcttaatta
 aaatattatt atatctcagg gaatagggaa acctaagaag agagagagag aaatagggga
 aaggccagtc agtggagcag tcagaacatg cgacatttag ccattaagtt cgttgtctga
 tgtgggtgca gtttgtggca tcccaaaaca attacaacag taacgtcaaa gatcactgat
 cataaattgc cataacagat ataaaaataa tggaaaagct tgaattactt tgagaattgg
 caaaatgtga cacagaaaca gtaagtgagc acatgctgtt ggaaaaatgg caccgatgga
 cttggtcaat gagttaccac aaatcttcaa tttgtgaaaa gtgcaggatg tatgaagtgc
 agtaaagcaa agtgcaataa aatgaggcat acTCAGATAT TGATTTTGCA ATGCTGTATA
 GTATTCATAA ATCTCCTTAG AATACAACGC TTCCTTTTAC TTCATCACTG CTGTCTTAAA
 CCAACATGTT GGGTAATAGA ACATTTGGAA AACATTCAAA ACTATTTTGT ATCTGTTTCT
 GTATTTTA
 R
 GATTGTGTCA GGTTTCTTTA GATACCACGC ATGTATTTTA AAGATTTAAG GGCAGTTTAG
 GATGATATGT TTTCCTTTCA ATGTACTTCT CTGTAAAAAC CAGCATTGAA ATTTTGCTTT
 AGTACTGTAT GAAAATGTGA GGTCAAGTTT TATTTTGTAC TTGTTTAAAC AATTGTGTCA
 TAAATCCATG ATGTCTGTCT

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_005403->NM_001039538 function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss1956925	HapMap-CEU	European	120	IG	0.750	0.250		0.273	0.875	0.125
	HapMap-HCB	Asian	90	IG	0.689	0.289	0.022	1.000	0.833	0.167
	HapMap-JPT	Asian	88	IG	0.614	0.318	0.068	0.584	0.773	0.227
	HapMap-YRI	Sub-Saharan African	120	IG	0.100	0.517	0.383	0.343	0.358	0.642
ss23236732	AFD_EUR_PANEL	European	48	IG	0.750	0.208	0.042	0.439	0.854	0.146
	AFD_AFR_PANEL	African American	46	IG	0.174	0.652	0.174	0.150	0.500	0.500
	AFD_CHN_PANEL	Asian	48	IG	0.708	0.208	0.083	0.150	0.812	0.188

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
Validated by: PERLEGEN DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN